 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | ZNF30,GPX2,MAPK1IP1L,RFK,TMEM168,VSIG2,MST1R,CAPN9,SLC9A1,MED7,PLEKHA7,ATP2A3,FAM214A,MCEE,DNMBP,IP6K2,FGD4,SCP2,KLF4,LYSMD4,STAM2,PSCA,TTC39B,GNAQ,RSBN1,EIF2AK3,CYP2S1,AFTPH,CHP1,CAAP1,SMIM22,SERINC5,FUCA1,C14orf28,TP53INP1,KLHL28,SNAPC1,LARP7,TMEM38A,IFNGR1,KIAA2026,FBXO22,SNX16,IFT74,NBEAL2,PDCD6IP,RC3H1,HIF1A,ZNF44,SPATA18,FBXO34,DNM2,PPP1R2,NUDT12,MFSD9,CCNH,GCNT4,KIFBP,FEM1C,PSIP1,ANAPC10,MBD2,ESRP1,FA2H,GSKIP,ITSN2,SPTLC2,FOXA3,RASEF,RBM47,THAP6,FBXL5,TMEM41B,BCL10,C4orf33,RSBN1L,ZNF57,LCOR,ACOX1,TRAPPC6B,PNPLA8,LPCAT4,IRF2,OSTF1,CCDC125,ANKRA2,C9orf72,LPAR2,GALNT6,SH2D3A,TFF2,MINDY3,OSBPL3,ATG14,PWWP2A,PPP6C,SYTL2,TAX1BP1,METTL14,PPP4R3A,LIPH,MARVELD2,ABHD3,CMTM6,UBA3,EPN3,CREM,BTBD10,VSIG10,TMEM68,S100P,ELOVL6,MANSC1,GOLPH3L,ARHGAP12,NT5C2,ALAD,PIK3C2B,PTBP3,SCAMP1,CDK7,RHBDL2,VPS13A,ZNF69,EAPP,MPZL3,SDCBP2,PCMTD1,SHOC2,JKAMP,CDC37L1,CARD8,BCAS1,ZDHHC21,PDCL | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | | ENSG00000260912 | ENST00000563205 | exon_skip_76409 | chr11:85711112-85711232 | -13.36 | -0.1172 | SYTL2 | ENST00000528231 | In-frame |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000260912 | ENST00000563205 | exon_skip_382356 | chr3:37091466-37091538 | -8.32 | -0.1300 | LRRFIP2 | ENST00000336686 | In-frame |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation | | ENSG00000260912 | ENSG00000072954 | TMEM38A | ACC,CHOL,ESCA,PAAD,STAD | | STAD | | ENSG00000260912 | ENSG00000163071 | SPATA18 | ACC,THCA,THYM,UCEC,UCS | THCA | | | ENSG00000260912 | ENSG00000019102 | VSIG2 | BLCA,CHOL,DLBC,ESCA,KIRP,LIHC,PAAD,SARC,STAD | | ESCA,STAD | | ENSG00000260912 | ENSG00000049283 | EPN3 | BLCA,ESCA,KIRP,PAAD,STAD | | ESCA,STAD | | ENSG00000260912 | ENSG00000064787 | BCAS1 | BLCA,COAD,ESCA,PAAD,STAD | | STAD | | ENSG00000260912 | ENSG00000167653 | PSCA | BLCA,CHOL,DLBC,ESCA,KIRP,SARC,STAD | | ESCA,STAD | | ENSG00000260912 | ENSG00000176928 | GCNT4 | BLCA,ESCA,KIRP,STAD,THYM | | ESCA,STAD | | ENSG00000260912 | ENSG00000135773 | CAPN9 | CHOL,COAD,ESCA,PAAD,STAD | | ESCA,STAD | | ENSG00000260912 | ENSG00000137501 | SYTL2 | CHOL,COAD,ESCA,KICH,PAAD,READ,STAD | | ESCA | | ENSG00000260912 | ENSG00000160181 | TFF2 | CHOL,DLBC,ESCA,SARC,STAD | | ESCA,STAD | | ENSG00000260912 | ENSG00000163898 | LIPH | CHOL,COAD,ESCA,KICH,PAAD,THCA | THCA | | | ENSG00000260912 | ENSG00000164078 | MST1R | CHOL,ESCA,KIRP,PAAD,THCA | THCA | | | ENSG00000260912 | ENSG00000167600 | CYP2S1 | CHOL,KICH,PAAD,STAD,TGCT,THCA | THCA | | | ENSG00000260912 | ENSG00000163993 | S100P | DLBC,ESCA,KIRP,SARC,STAD,UCS | | STAD | | ENSG00000260912 | ENSG00000125775 | SDCBP2 | ESCA,PAAD,SARC,STAD,UCS | | STAD | | ENSG00000260912 | ENSG00000139132 | FGD4 | ESCA,PAAD,READ,SARC,TGCT | | ESCA | | ENSG00000260912 | ENSG00000148218 | ALAD | ESCA,PAAD,TGCT,THYM,UCS | | ESCA | | ENSG00000260912 | ENSG00000155158 | TTC39B | HNSC,OV,READ,THCA,UCS | THCA | | | ENSG00000260912 | ENSG00000170522 | ELOVL6 | LAML,PAAD,STAD,TGCT,THCA | THCA | |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000260912.1 | ENST00000563205.1 | 51 | 25 | 180 |
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