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lncRNA: ENSG00000260802 |
Summary for LINC00890 |
 Gene summary |
| Gene information | Ensembl ID | ENSG00000260802 | Gene symbol | LINC00890 |
| Gene name | ||
| HGNC | ||
| Entrez ID | 401613 | |
| Gene type | lincRNA | |
| Synonyms | ||
| UniProtAcc |
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Structure and expression level for LINC00890 |
| AS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure. |
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| Differentially expressed gene analysis between cancer and normal samples. |
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| Ensembl ID | Base mean | log2FC(AD/control) | lfcSE | Stat | P-value | Adjc.p-value | DEG direction | Cancer type |
| ENSG00000260802 | 3.703429e+03 | 8.207033e+00 | 6.286644e-01 | 1.305471e+01 | 5.970000e-39 | 4.180000e-37 | UP | KICH |
| ENSG00000260802 | 1.307973e+02 | -3.964249e+00 | 5.472197e-01 | -7.244347e+00 | 4.350000e-13 | 3.780000e-12 | DOWN | UCEC |
| ENSG00000260802 | 1.471050e+03 | 8.449072e+00 | 1.234429e+00 | 6.844516e+00 | 7.670000e-12 | 8.480000e-10 | UP | PCPG |
| ENSG00000260802 | 7.973881e+02 | -1.273553e+00 | 2.487239e-01 | -5.120349e+00 | 3.050000e-07 | 1.420000e-06 | DOWN | PRAD |
| ENSG00000260802 | 2.939586e+02 | -1.515732e+00 | 4.909522e-01 | -3.087330e+00 | 2.019630e-03 | 4.415497e-03 | DOWN | LIHC |
| Correlation between lncRNAs and cancer stages. |
| LncRNA Ensembl ID | Correlation | P-value | Cancer Type | Adjc.p-value |
| ENSG00000260802 | 4.058699e-01 | 7.943606e-05 | KICH | 1.365148e-04 |
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lncRNA-Protein interaction for LINC00890 |
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| lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5). |
| LncRNA Ensembl ID | LncRNA ENST ID | LncRNA Name | Protein Ensembl ID | Protein Name | CatRAPID Score | Lncpro Score | UniPortID | Gene Subtype | Public source |
| lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5). |
| LncRNA Ensembl ID | LncRNA ENST ID | LncRNA Name | Protein Ensembl ID | Protein Name | CatRAPID Score | Lncpro Score | UniPortID | Gene Subtype | Public source |
| lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5). |
| LncRNA Ensembl ID | LncRNA ENST ID | LncRNA Name | Protein Ensembl ID | Protein Name | CatRAPID Score | Lncpro Score | UniPortID | Gene Subtype | Public source |
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