 lncRNA targets the enhancer region and positively regulates the gene expression. |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
 |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000260563 | ENST00000566986 | exon_skip_7523 | chr1:78660553-78660654 | -13.18 | -0.1345 | IFI44 | ENST00000370747 | Frame-shift | | ENSG00000260563 | ENST00000566986 | exon_skip_111863 | chr14:23565815-23565892 | -16.09 | -0.2774 | AP1G2 | ENST00000308724,ENST00000397120 | Frame-shift | | ENSG00000260563 | ENST00000566986 | exon_skip_290158 | chr17:42953723-42953778 | -9.77 | -0.2272 | AARSD1 | ENST00000427569 | Frame-shift | | ENSG00000260563 | ENST00000566986 | exon_skip_370518 | chr22:50247691-50247776 | -16.45 | -0.3046 | HDAC10 | ENST00000216271 | Frame-shift | | ENSG00000260563 | ENST00000566986 | exon_skip_466137 | chr7:48103296-48103411 | -16.19 | -0.1741 | UPP1 | ENST00000331803,ENST00000395564 | Frame-shift | | ENSG00000260563 | ENST00000566986 | exon_skip_470226 | chr7:103307595-103307708 | -14.58 | -0.1585 | PMPCB | ENST00000249269 | Frame-shift | | ENSG00000260563 | ENST00000566986 | exon_skip_11029 | chr1:154989559-154989707 | -16.49 | -0.1221 | FLAD1 | ENST00000292180 | Frame-shift | | ENSG00000260563 | ENST00000566986 | exon_skip_41813 | chr10:68337857-68337996 | -21.20 | -0.1656 | HNRNPH3 | ENST00000265866 | Frame-shift | | ENSG00000260563 | ENST00000566986 | exon_skip_66482 | chr11:126274926-126275021 | -14.70 | -0.1670 | FOXRED1 | ENST00000263578 | Frame-shift | | ENSG00000260563 | ENST00000566986 | exon_skip_74009 | chr11:64773429-64773505 | -11.59 | -0.2107 | SF1 | ENST00000377390 | Frame-shift | | ENSG00000260563 | ENST00000566986 | exon_skip_95407 | chr12:95040475-95040597 | -14.31 | -0.1234 | NR2C1 | ENST00000333003 | Frame-shift | | ENSG00000260563 | ENST00000566986 | exon_skip_114365 | chr14:74290026-74290118 | -13.88 | -0.1672 | ABCD4 | ENST00000356924 | Frame-shift | | ENSG00000260563 | ENST00000566986 | exon_skip_309204 | chr19:49181348-49181461 | -15.03 | -0.2059 | TRPM4 | ENST00000252826 | Frame-shift | | ENSG00000260563 | ENST00000566986 | exon_skip_319223 | chr19:43526200-43526349 | -20.16 | -0.1516 | ETHE1 | ENST00000292147 | Frame-shift | | ENSG00000260563 | ENST00000566986 | exon_skip_374551 | chr3:50100531-50100605 | -9.64 | -0.1634 | RBM5 | ENST00000347869 | Frame-shift | | ENSG00000260563 | ENST00000566986 | exon_skip_382458 | chr3:38131595-38131638 | -8.06 | -0.2015 | ACAA1 | ENST00000333167 | Frame-shift | | ENSG00000260563 | ENST00000566986 | exon_skip_9446 | chr1:147270931-147271005 | -8.67 | -0.3770 | CHD1L | ENST00000369258 | Frame-shift | | ENSG00000260563 | ENST00000566986 | exon_skip_16568 | chr1:201989382-201989531 | -16.63 | -0.1188 | RNPEP | ENST00000295640 | Frame-shift | | ENSG00000260563 | ENST00000566986 | exon_skip_53559 | chr10:101793912-101793998 | -11.36 | -0.1748 | OGA | ENST00000361464 | Frame-shift | | ENSG00000260563 | ENST00000566986 | exon_skip_87733 | chr12:120571190-120571291 | -13.32 | -0.1567 | RNF10 | ENST00000325954 | Frame-shift | | ENSG00000260563 | ENST00000566986 | exon_skip_111870 | chr14:23566561-23566686 | -14.21 | -0.1421 | AP1G2 | ENST00000397120 | Frame-shift | | ENSG00000260563 | ENST00000566986 | exon_skip_139422 | chr16:89114338-89114487 | -24.89 | -0.1717 | ACSF3 | ENST00000317447,ENST00000406948 | Frame-shift | | ENSG00000260563 | ENST00000566986 | exon_skip_287763 | chr17:28884224-28884315 | -12.91 | -0.1555 | FLOT2 | ENST00000394908 | Frame-shift | | ENSG00000260563 | ENST00000566986 | exon_skip_292904 | chr17:69251746-69251866 | -12.65 | -0.1129 | ABCA5 | ENST00000392676,ENST00000588877 | In-frame | | ENSG00000260563 | ENST00000566986 | exon_skip_324294 | chr2:27774423-27774530 | -14.43 | -0.2091 | MRPL33 | ENST00000296102 | Frame-shift | | ENSG00000260563 | ENST00000566986 | exon_skip_326885 | chr2:74490024-74490127 | -15.98 | -0.1998 | TTC31 | ENST00000233623 | Frame-shift | | ENSG00000260563 | ENST00000566986 | exon_skip_327748 | chr2:95410863-95411026 | -19.68 | -0.1526 | FAHD2A | ENST00000233379,ENST00000447036 | Frame-shift | | ENSG00000260563 | ENST00000566986 | exon_skip_335558 | chr2:240596680-240596942 | -30.82 | -0.1218 | CAPN10 | ENST00000391984 | Frame-shift | | ENSG00000260563 | ENST00000566986 | exon_skip_339830 | chr2:69423581-69423717 | -19.04 | -0.1943 | NFU1 | ENST00000410022 | Frame-shift | | ENSG00000260563 | ENST00000566986 | exon_skip_374375 | chr3:49675182-49675309 | -19.11 | -0.1541 | APEH | ENST00000296456 | Frame-shift | | ENSG00000260563 | ENST00000566986 | exon_skip_374497 | chr3:49999439-49999513 | -10.77 | -0.2505 | RBM6 | ENST00000266022 | Frame-shift | | ENSG00000260563 | ENST00000566986 | exon_skip_377198 | chr3:123130479-123130616 | -21.15 | -0.1762 | PDIA5 | ENST00000316218 | Frame-shift | | ENSG00000260563 | ENST00000566986 | exon_skip_378467 | chr3:143023974-143024018 | -7.99 | -0.3073 | U2SURP | ENST00000473835 | Frame-shift | | ENSG00000260563 | ENST00000566986 | exon_skip_380242 | chr3:186784961-186785101 | -14.42 | -0.1873 | EIF4A2 | ENST00000323963 | Frame-shift | | ENSG00000260563 | ENST00000566986 | exon_skip_384420 | chr3:49812647-49812738 | -13.76 | -0.1564 | UBA7 | ENST00000333486 | Frame-shift | | ENSG00000260563 | ENST00000566986 | exon_skip_431827 | chr4:109696409-109696486 | -7.99 | -0.1378 | CASP6 | ENST00000265164 | Frame-shift | | ENSG00000260563 | ENST00000566986 | exon_skip_433210 | chr4:177436275-177436351 | -16.08 | -0.2436 | AGA | ENST00000264595 | Frame-shift | | ENSG00000260563 | ENST00000566986 | exon_skip_436035 | chr5:79656957-79657001 | -8.27 | -0.2432 | TENT2 | ENST00000296783,ENST00000428308,ENST00000453514 | Frame-shift | | ENSG00000260563 | ENST00000566986 | exon_skip_442657 | chr5:74730259-74730398 | -12.77 | -0.1006 | GFM2 | ENST00000296805,ENST00000509430 | Frame-shift | | ENSG00000260563 | ENST00000566986 | exon_skip_511212 | chrX:71555189-71555385 | -19.01 | -0.1138 | OGT | ENST00000373719 | Frame-shift | | ENSG00000260563 | ENST00000566986 | exon_skip_333962 | chr2:219247112-219247246 | -16.39 | -0.1532 | STK16 | ENST00000396738,ENST00000409638 | Frame-shift | | ENSG00000260563 | ENST00000566986 | exon_skip_374581 | chr3:50110378-50110463 | -13.11 | -0.2222 | RBM5 | ENST00000347869 | Frame-shift |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name | | LncEditing_337873 | ENSG00000260563.3 | chr17 | 82293929 | + | lincRNA | RP13-516M14.1 | ENST00000566986.1 | lincRNA | RP13-516M14.1-001 | | LncEditing_337879 | ENSG00000260563.3 | chr17 | 82293972 | + | lincRNA | RP13-516M14.1 | ENST00000566986.1 | lincRNA | RP13-516M14.1-001 | | LncEditing_337884 | ENSG00000260563.3 | chr17 | 82294378 | + | lincRNA | RP13-516M14.1 | ENST00000566986.1 | lincRNA | RP13-516M14.1-001 | | LncEditing_337891 | ENSG00000260563.3 | chr17 | 82294441 | + | lincRNA | RP13-516M14.1 | ENST00000566986.1 | lincRNA | RP13-516M14.1-001 |
| Edited-associated DElncRNAs in cancer. |
 |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change | | ENSG00000260563 | LncEditing_337884 | SARC | chr17_82294378_+ | 8.161819e+00 | 4.195147e+00 | 1.041483e+00 | 7.975495e+00 | 1.517711e-15 | 5.788239e-15 | UP | | ENSG00000260563 | LncEditing_337879 | UCS | chr17_82293972_+ | 8.684751e+00 | 4.394383e+00 | 1.017477e+00 | 1.969578e+00 | 4.888671e-02 | 4.928096e-02 | UP | | ENSG00000260563 | LncEditing_337884 | UCS | chr17_82294378_+ | 7.478210e+00 | 3.723954e+00 | 9.941764e-01 | 3.929825e+00 | 8.500786e-05 | 3.750347e-04 | UP | | ENSG00000260563 | LncEditing_337879 | KIRC | chr17_82293972_+ | 4.566962e+00 | 2.449345e+00 | 1.112547e+00 | 1.236800e+01 | 3.894023e-35 | 2.952305e-34 | UP | | ENSG00000260563 | LncEditing_337884 | KIRC | chr17_82294378_+ | 4.430192e+00 | 2.730651e+00 | 1.432410e+00 | 9.616996e+00 | 6.778203e-22 | 1.754775e-21 | UP | | ENSG00000260563 | LncEditing_337891 | KIRC | chr17_82294441_+ | 3.838233e+00 | 3.138951e+00 | 3.446377e+00 | 3.339933e+00 | 8.379869e-04 | 9.196813e-04 | UP | | ENSG00000260563 | LncEditing_337879 | GBM | chr17_82293972_+ | 6.217418e+00 | 3.328299e+00 | 1.109225e+00 | 6.285627e+00 | 3.265337e-10 | 1.301309e-09 | UP | | ENSG00000260563 | LncEditing_337884 | GBM | chr17_82294378_+ | 5.669828e+00 | 3.527823e+00 | 1.460863e+00 | 4.954656e+00 | 7.245824e-07 | 1.419339e-06 | UP | | ENSG00000260563 | LncEditing_337891 | GBM | chr17_82294441_+ | 5.349602e+00 | 3.969177e+00 | 2.322386e+00 | 2.742422e+00 | 6.098797e-03 | 6.843171e-03 | UP | | ENSG00000260563 | LncEditing_337879 | MESO | chr17_82293972_+ | 4.366224e+00 | 2.287221e+00 | 1.072052e+00 | 4.516650e+00 | 6.282575e-06 | 2.751945e-05 | UP | | ENSG00000260563 | LncEditing_337879 | UVM | chr17_82293972_+ | 6.273543e+00 | 3.932469e+00 | 1.484021e+00 | 2.977799e+00 | 2.903268e-03 | 3.876255e-03 | UP | | ENSG00000260563 | LncEditing_337884 | UVM | chr17_82294378_+ | 6.298121e+00 | 3.698778e+00 | 1.302299e+00 | 3.179985e+00 | 1.472826e-03 | 2.102197e-03 | UP | | ENSG00000260563 | LncEditing_337879 | BLCA | chr17_82293972_+ | 5.664267e+00 | 3.889920e+00 | 1.844511e+00 | 5.939506e+00 | 2.858828e-09 | 4.393228e-09 | UP | | ENSG00000260563 | LncEditing_337884 | BLCA | chr17_82294378_+ | 5.756416e+00 | 3.743915e+00 | 1.611284e+00 | 7.218194e+00 | 5.268267e-13 | 1.085918e-12 | UP | | ENSG00000260563 | LncEditing_337879 | LGG | chr17_82293972_+ | 7.023527e+00 | 5.643335e+00 | 3.168088e+00 | 5.122889e+00 | 3.008891e-07 | 3.841369e-07 | UP | | ENSG00000260563 | LncEditing_337884 | LGG | chr17_82294378_+ | 6.851321e+00 | 5.116676e+00 | 2.374309e+00 | 6.854683e+00 | 7.147074e-12 | 1.176185e-11 | UP | | ENSG00000260563 | LncEditing_337879 | ACC | chr17_82293972_+ | 7.567856e+00 | 3.448721e+00 | 8.819718e-01 | 4.019533e+00 | 5.831368e-05 | 2.017338e-04 | UP | | ENSG00000260563 | LncEditing_337884 | ACC | chr17_82294378_+ | 7.226975e+00 | 3.515865e+00 | 9.619897e-01 | 3.331981e+00 | 8.623012e-04 | 1.599631e-03 | UP | | ENSG00000260563 | LncEditing_337879 | LUSC | chr17_82293972_+ | 6.156038e+00 | 3.632583e+00 | 1.314050e+00 | 5.158633e+00 | 2.487598e-07 | 3.043539e-07 | UP | | ENSG00000260563 | LncEditing_337884 | LUSC | chr17_82294378_+ | 7.082997e+00 | 3.080777e+00 | 8.325939e-01 | 1.041563e+01 | 2.104000e-25 | 9.061226e-25 | UP | | ENSG00000260563 | LncEditing_337879 | SKCM | chr17_82293972_+ | 6.882544e+00 | 3.258371e+00 | 9.269635e-01 | 9.723931e+00 | 2.383972e-22 | 5.304993e-22 | UP | | ENSG00000260563 | LncEditing_337884 | SKCM | chr17_82294378_+ | 6.701945e+00 | 3.371198e+00 | 1.008758e+00 | 9.688770e+00 | 3.365561e-22 | 7.407892e-22 | UP | | ENSG00000260563 | LncEditing_337879 | PCPG | chr17_82293972_+ | 9.014427e+00 | 5.784067e+00 | 1.562130e+00 | 5.104493e+00 | 3.316826e-07 | 8.029477e-07 | UP | | ENSG00000260563 | LncEditing_337884 | PCPG | chr17_82294378_+ | 9.094210e+00 | 5.055351e+00 | 1.180446e+00 | 6.902842e+00 | 5.097231e-12 | 4.346060e-11 | UP | | ENSG00000260563 | LncEditing_337891 | PCPG | chr17_82294441_+ | 7.824235e+00 | 7.358358e+00 | 1.129104e+01 | 2.025991e+00 | 4.276575e-02 | 4.366419e-02 | UP | | ENSG00000260563 | LncEditing_337879 | KIRP | chr17_82293972_+ | 8.350942e+00 | 4.213138e+00 | 1.013126e+00 | 7.843786e+00 | 4.371603e-15 | 1.851745e-14 | UP | | ENSG00000260563 | LncEditing_337884 | KIRP | chr17_82294378_+ | 7.614851e+00 | 4.828224e+00 | 1.521322e+00 | 4.798312e+00 | 1.600086e-06 | 2.363285e-06 | UP | | ENSG00000260563 | LncEditing_337879 | THCA | chr17_82293972_+ | 4.227699e+00 | 3.105007e+00 | 2.245796e+00 | 6.926485e+00 | 4.314243e-12 | 8.996595e-12 | UP | | ENSG00000260563 | LncEditing_337884 | THCA | chr17_82294378_+ | 4.417308e+00 | 2.887961e+00 | 1.631012e+00 | 1.038503e+01 | 2.900730e-25 | 1.687949e-24 | UP | | ENSG00000260563 | LncEditing_337891 | THCA | chr17_82294441_+ | 4.123509e+00 | 3.283329e+00 | 3.042165e+00 | 3.847494e+00 | 1.193324e-04 | 1.522173e-04 | UP | | ENSG00000260563 | LncEditing_337873 | CHOL | chr17_82293929_+ | 6.354941e+00 | 4.725437e+00 | 2.339560e+00 | 2.013468e+00 | 4.406540e-02 | 4.471907e-02 | UP | | ENSG00000260563 | LncEditing_337879 | CHOL | chr17_82293972_+ | 7.449087e+00 | 4.496397e+00 | 1.373072e+00 | 2.035560e+00 | 4.179455e-02 | 4.343186e-02 | UP | | ENSG00000260563 | LncEditing_337884 | CHOL | chr17_82294378_+ | 6.516463e+00 | 4.446502e+00 | 1.813505e+00 | 2.245007e+00 | 2.476766e-02 | 2.979213e-02 | UP | | ENSG00000260563 | LncEditing_337879 | THYM | chr17_82293972_+ | 8.457618e+00 | 1.079175e+01 | -2.844092e+00 | -2.900000e+00 | 3.731627e-03 | 4.681809e-03 | DOWN | | ENSG00000260563 | LncEditing_337884 | THYM | chr17_82294378_+ | 8.734364e+00 | 1.088331e+01 | -3.151167e+00 | -2.713625e+00 | 6.655148e-03 | 8.051540e-03 | DOWN | | ENSG00000260563 | LncEditing_337891 | OV | chr17_82294441_+ | 2.868676e+00 | 1.692568e+00 | 1.313765e+00 | 5.677563e+00 | 1.366271e-08 | 2.052755e-08 | UP | | ENSG00000260563 | LncEditing_337879 | LUAD | chr17_82293972_+ | 4.940125e+00 | 2.888513e+00 | 1.291621e+00 | 6.201252e+00 | 5.601575e-10 | 7.952400e-10 | UP | | ENSG00000260563 | LncEditing_337884 | LUAD | chr17_82294378_+ | 5.682863e+00 | 2.684731e+00 | 9.243509e-01 | 9.095061e+00 | 9.453317e-20 | 2.747172e-19 | UP | | ENSG00000260563 | LncEditing_337879 | STAD | chr17_82293972_+ | 3.238684e+00 | 1.503878e+00 | 9.035706e-01 | 5.276909e+00 | 1.313810e-07 | 1.727618e-07 | UP | | ENSG00000260563 | LncEditing_337884 | STAD | chr17_82294378_+ | 3.190236e+00 | 1.415126e+00 | 8.527091e-01 | 7.486625e+00 | 7.066721e-14 | 1.544969e-13 | UP | | ENSG00000260563 | LncEditing_337884 | CESC | chr17_82294378_+ | 5.700764e+00 | 3.412822e+00 | 1.351004e+00 | 5.200151e+00 | 1.991265e-07 | 3.016471e-07 | UP | | ENSG00000260563 | LncEditing_337879 | PRAD | chr17_82293972_+ | 6.834801e+00 | 4.999157e+00 | 2.216240e+00 | 8.017647e+00 | 1.077901e-15 | 2.990795e-15 | UP | | ENSG00000260563 | LncEditing_337884 | PRAD | chr17_82294378_+ | 7.072924e+00 | 5.146186e+00 | 2.179583e+00 | 7.709340e+00 | 1.264698e-14 | 3.235656e-14 | UP | | ENSG00000260563 | LncEditing_337879 | BRCA | chr17_82293972_+ | 4.517893e+00 | 2.643457e+00 | 1.293286e+00 | 1.099477e+01 | 4.049254e-28 | 7.042602e-28 | UP | | ENSG00000260563 | LncEditing_337884 | BRCA | chr17_82294378_+ | 4.380351e+00 | 2.533776e+00 | 1.266211e+00 | 1.163433e+01 | 2.757464e-31 | 5.374468e-31 | UP | | ENSG00000260563 | LncEditing_337891 | BRCA | chr17_82294441_+ | 4.285204e+00 | 2.727035e+00 | 1.533670e+00 | 8.325539e+00 | 8.394564e-17 | 1.105588e-16 | UP | | ENSG00000260563 | LncEditing_337879 | PAAD | chr17_82293972_+ | 6.218467e+00 | 3.930703e+00 | 1.511095e+00 | 3.209647e+00 | 1.328981e-03 | 1.612049e-03 | UP | | ENSG00000260563 | LncEditing_337884 | PAAD | chr17_82294378_+ | 6.511893e+00 | 3.807980e+00 | 1.291904e+00 | 4.660658e+00 | 3.152001e-06 | 5.883736e-06 | UP | | ENSG00000260563 | LncEditing_337879 | ESCA | chr17_82293972_+ | 2.481833e+00 | 1.575857e+00 | 1.526088e+00 | 3.117339e+00 | 1.824919e-03 | 2.042194e-03 | UP | | ENSG00000260563 | LncEditing_337884 | ESCA | chr17_82294378_+ | 2.465709e+00 | 1.484006e+00 | 1.365178e+00 | 4.532733e+00 | 5.822548e-06 | 8.439876e-06 | UP |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value | | ENSG00000260563 | LncEditing_337884 | -3.310857e-01 | 1.048229e-03 | 2.144590e-03 | | ENSG00000260563 | LncEditing_337891 | -4.032787e-01 | 3.342829e-03 | 5.237501e-03 | | ENSG00000260563 | LncEditing_337891 | -3.913091e-01 | 2.179587e-03 | 2.620544e-03 | | ENSG00000260563 | LncEditing_337884 | -5.994458e-01 | 8.556361e-03 | 2.305563e-02 | | ENSG00000260563 | LncEditing_337884 | -3.349433e-01 | 5.795144e-04 | 1.956663e-03 | | ENSG00000260563 | LncEditing_337884 | -6.103399e-01 | 1.772921e-05 | 2.037963e-04 | | ENSG00000260563 | LncEditing_337884 | -3.378664e-01 | 3.720875e-04 | 7.927081e-04 | | ENSG00000260563 | LncEditing_337884 | -5.167954e-01 | 4.098993e-03 | 1.192513e-02 | | ENSG00000260563 | LncEditing_337879 | -4.500315e-01 | 8.593187e-03 | 1.480578e-02 | | ENSG00000260563 | LncEditing_337884 | -3.587241e-01 | 6.605545e-07 | 4.395564e-06 | | ENSG00000260563 | LncEditing_337884 | -4.623721e-01 | 1.385056e-03 | 4.916948e-03 |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type | | ENSG00000260563 | ENSG00000079134 | THOC1 | exon_skip_370518 | ENSG00000100429:chr22:50247691-50247776 | HDAC10 | ENST00000216271 | Frame-shift | UVM,PRAD,THYM,PCPG,PAAD | | ENSG00000260563 | ENSG00000130254 | SAFB2 | exon_skip_382458 | ENSG00000060971:chr3:38131595-38131638 | ACAA1 | ENST00000333167 | Frame-shift | READ,OV,PCPG,PAAD,THCA | | ENSG00000260563 | ENSG00000079134 | THOC1 | exon_skip_382458 | ENSG00000060971:chr3:38131595-38131638 | ACAA1 | ENST00000333167 | Frame-shift | STAD,UVM,PRAD,UCS,THYM,PCPG,PAAD,THCA |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000260563.3 | ENST00000566986.1 | 99 | 318 | 19 |
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