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lncRNA: ENSG00000260442

Summary for ATP2A1-AS1

Gene summary

Gene information	Ensembl ID	ENSG00000260442
	Gene symbol	ATP2A1-AS1
	Gene name	ATP2A1 antisense RNA 1
	HGNC	51370
	Entrez ID	100289092
	Gene type	antisense
	Synonyms	16p11.2\|ATP2A1-AS1
	UniProtAcc

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Structure and expression level for ATP2A1-AS1

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000260442	6.661575e+01	2.031136e+00	4.117784e-01	4.932594e+00	8.110000e-07	6.790000e-06	UP	GBM
ENSG00000260442	7.448476e+01	1.273643e+00	2.865628e-01	4.444551e+00	8.810000e-06	6.190000e-05	UP	BLCA
ENSG00000260442	1.213767e+02	2.566300e+00	6.483154e-01	3.958413e+00	7.540000e-05	9.660290e-04	UP	CESC
ENSG00000260442	4.439735e+01	2.023688e+00	2.207839e-01	9.165921e+00	4.910000e-20	8.010000e-19	UP	UCEC
ENSG00000260442	4.199981e+01	2.331911e+00	1.778670e-01	1.311042e+01	2.870000e-39	4.630000e-38	UP	LUSC
ENSG00000260442	4.638738e+01	2.186654e+00	1.280358e-01	1.707846e+01	2.150000e-65	7.240000e-64	UP	BRCA
ENSG00000260442	2.515720e+01	1.761794e+00	1.954747e-01	9.012901e+00	2.010000e-19	2.570000e-18	UP	COAD
ENSG00000260442	3.048848e+01	1.779489e+00	3.609386e-01	4.930172e+00	8.220000e-07	1.060000e-05	UP	READ

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000260442	3.216481e-01	4.337589e-03	ACC	1.445863e-02
ENSG00000260442	3.049264e-01	4.265406e-14	UCEC	3.274453e-13

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lncRNA-Protein interaction for ATP2A1-AS1

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000260442	ENST00000566956	ATP2A1-AS1	ENSG00000204371	EHMT2	55.38	90.3943	Q96KQ7	Epi	NA
ENSG00000260442	ENST00000566956	ATP2A1-AS1	ENSG00000167670	CHAF1A	39.64	90.0995	Q13111	Epi	NA
ENSG00000260442	ENST00000566956	ATP2A1-AS1	ENSG00000106462	EZH2	29.1	91.8834	Q15910	Epi	ChIP-seq
ENSG00000260442	ENST00000566956	ATP2A1-AS1	ENSG00000115241	PPM1G	15.75	90.2424	O15355	Epi	NA
ENSG00000260442	ENST00000561547	ATP2A1-AS1	ENSG00000149929	HIRIP3	9.76	91.2432	Q9BW71	Epi	NA

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

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lncRNA-DNA interaction for ATP2A1-AS1

lncRNA targets the enhancer region and positively regulates the gene expression.

lncRNA targets the promoter region and positively regulates the gene expression.

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for ATP2A1-AS1

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

CNOT1,CAB39,TMEM87B,FAM168B,NF1,APPL2,AEBP2,LRRFIP1,VPS4B,UHRF1BP1L,RNF4,FCF1,KDM3B,NT5C2,ZMYND11,BECN1,YPEL2,SIPA1L1,SMCR8,SNX6,UBR1,SEPTIN10,PCDHGC3,PPP1R12A,PSEN1,TAOK3,NPEPPS,ZMYM5,KIAA1109,PTPN11,RIOK3,KIAA0100,XPC,PLEKHB2,PRDM2,FCHO2,SMG1,UBE4A,SLAIN2,MAP3K2,ANKFY1,ERBIN,NDEL1,PUM1,FNDC3A,CAP1,SEC24B,CLTC,PRDM4,SON,MACF1,PIK3C3,NBR1,ATP11B,CCDC47,NUMB,PRRC2C,PKD2,KTN1,NACC2,ARFIP1,MON2,APAF1,MR1,LONP2,TMEM127,CPEB4,RNF111,PCNX1,USP32,MANBA,LRP10,KIDINS220,CYLD,IQGAP1,DYNC1I2,ITGAV,ZDHHC17,USP34,GTF2H3,TANK,SMARCA2,CLIP1,CLCN3,JMJD1C,CLMN,STAT3,CIPC,FAM219B,SART3,FBXO11,PPIL4,DDX6,MINK1,STK24,NCOA2,PINK1,UBE3B,AP3B1,SNAP23,DDX3X,CLCC1,MFSD9,BCL2L2,ITSN2,ASXL2,THAP6,MFSD14A,MAPK1,RNF169,KLF13,MTMR10,POLR2B,FRYL,WIPF2,TBC1D2B,MYCBP2,AGFG1,BAZ2A,TRIM56,LPCAT3,SF3B1,PIKFYVE,USP9X,MAST4,MYOF,ROCK2,ZBTB1,ACVR1,NDST1,DYNC1LI2,KBTBD4,MIDEAS,RASA1,GNPTAB,RREB1,MED13,CERT1,RAP1B,WNK1,WDR7,KDSR,ARF3,MARCHF7,XRN1,NCOA4,MBNL2,MED13L,SMG6,ADNP2,SNX1,MTRR,EPS15,IRF2,SERINC3,ACTR2,DOCK9,PPARA,SYNJ1,PLSCR4,GPATCH8,AKAP10,TRIP12,PRKAA1,TNPO1,LAMP2,NFAT5,MED1,KIF2A,GTF2I,SMAD5,REST,SLC12A6,HBP1,EIF4G2,MORC3,SOS2,CD46,CSNK1A1,CSNK1G3,GOSR1,ATP1A1,HEATR5B,CPNE8,PRKAR1A,BIRC6,IDS,CCDC91,POLK,SETD7,SEC31A,TMBIM1,CFLAR,CTNNA1,IL6ST,CYFIP1,GOLM2,AFF1,VRK2,GCC2,CAST,TEX2,DENND5A,TLK1,BDP1,FAM13B,ITFG1,FEM1B,CALCOCO2,CANX,SMARCAD1,HDHD2,SPG11,FAM172A,INPP4A,NEMF,AFAP1,AHNAK,CTDSP2,FYCO1,MCFD2,IBTK,NCOR1,SPOPL,NDUFS1,SDAD1,SCAF11

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

ORF mutation

-lncRNA and exonskipping events are negatively correlated.

lncRNA and exonskipping events negative correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	LOF
ENSG00000260442	ENST00000566956	exon_skip_91507	chr12:47795905-47796016	-23.47	-0.2471	HDAC7	ENST00000427332	In-frame
ENSG00000260442	ENST00000566956	exon_skip_303345	chr19:17227839-17228005	-21.73	-0.1499	OCEL1	ENST00000215061	Frame-shift
ENSG00000260442	ENST00000566956	exon_skip_423688	chr4:53414614-53414722	-18.08	-0.1722	FIP1L1	ENST00000337488	In-frame
ENSG00000260442	ENST00000566956	exon_skip_13833	chr1:167776063-167776166	-11.55	-0.1481	MPZL1	ENST00000359523	Frame-shift
ENSG00000260442	ENST00000566956	exon_skip_137312	chr16:66563121-66563217	-8.68	-0.1099	CKLF	ENST00000264001	In-frame
ENSG00000260442	ENST00000566956	exon_skip_430434	chr4:82356536-82356683	-10.02	-0.1670	HNRNPD	ENST00000313899	In-frame
ENSG00000260442	ENST00000566956	exon_skip_445390	chr5:150403120-150403312	-20.34	-0.1204	CD74	ENST00000009530	In-frame
ENSG00000260442	ENST00000566956	exon_skip_29583	chr1:114780109-114780215	-11.41	-0.1119	SIKE1	ENST00000060969	Frame-shift

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

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Variants for ATP2A1-AS1

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID

PC Gene ID

PC Gene Name

Positive correlated cancers

Cancer with PC gene up-regulation

Cancer with PC gene down-regulation

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID	LncRNA ENST ID	PC Gene Name	PC Gene ID	PC ENST ID	dG	nDG	Cancer with PC gene up-regulation	Cancer with PC gene Down-regulation
ENSG00000260442	ENST00000561547	EPS15	ENSG00000085832	ENST00000465467	-0.1462	351	-	GBM
ENSG00000260442	ENST00000561547	FYCO1	ENSG00000163820	ENST00000438446	-0.1086	124	-	BLCA,CESC,UCEC,LUSC,READ
ENSG00000260442	ENST00000561547	MAST4	ENSG00000069020	ENST00000406374	-0.2768	41	-	GBM,UCEC
ENSG00000260442	ENST00000561547	MAST4	ENSG00000069020	ENST00000452953	-0.1092	245	-	GBM,UCEC
ENSG00000260442	ENST00000561547	MAST4	ENSG00000069020	ENST00000432817	-0.1337	323	-	GBM,UCEC
ENSG00000260442	ENST00000561547	MAST4	ENSG00000069020	ENST00000434115	-0.2768	41	-	GBM,UCEC
ENSG00000260442	ENST00000561547	MAST4	ENSG00000069020	ENST00000411628	-0.1337	323	-	GBM,UCEC
ENSG00000260442	ENST00000561547	MAST4	ENSG00000069020	ENST00000403666	-0.1060	259	-	GBM,UCEC
ENSG00000260442	ENST00000561547	MAST4	ENSG00000069020	ENST00000450827	-0.1534	323	-	GBM,UCEC
ENSG00000260442	ENST00000561547	MAST4	ENSG00000069020	ENST00000407621	-0.2768	41	-	GBM,UCEC
ENSG00000260442	ENST00000561547	MAST4	ENSG00000069020	ENST00000443808	-0.1088	102	-	GBM,UCEC
ENSG00000260442	ENST00000561547	CERT1	ENSG00000113163	ENST00000261415	-0.4047	228	-	GBM,LUSC
ENSG00000260442	ENST00000566956	EPS15	ENSG00000085832	ENST00000465467	-0.1409	347	-	GBM
ENSG00000260442	ENST00000566956	FYCO1	ENSG00000163820	ENST00000438446	-0.1064	246	-	BLCA,CESC,UCEC,LUSC,READ
ENSG00000260442	ENST00000566956	NCOA4	ENSG00000266412	ENST00000578454	-0.1548	192	-	COAD,READ
ENSG00000260442	ENST00000566956	NCOA4	ENSG00000266412	ENST00000579039	-0.1548	221	-	COAD,READ
ENSG00000260442	ENST00000566956	MAST4	ENSG00000069020	ENST00000406374	-0.2768	66	-	GBM,UCEC
ENSG00000260442	ENST00000566956	MAST4	ENSG00000069020	ENST00000432817	-0.1274	36	-	GBM,UCEC
ENSG00000260442	ENST00000566956	MAST4	ENSG00000069020	ENST00000434115	-0.2768	66	-	GBM,UCEC
ENSG00000260442	ENST00000566956	MAST4	ENSG00000069020	ENST00000411628	-0.1274	36	-	GBM,UCEC
ENSG00000260442	ENST00000566956	MAST4	ENSG00000069020	ENST00000490016	-0.1069	1	-	GBM,UCEC
ENSG00000260442	ENST00000566956	MAST4	ENSG00000069020	ENST00000403666	-0.1186	1	-	GBM,UCEC
ENSG00000260442	ENST00000566956	MAST4	ENSG00000069020	ENST00000450827	-0.1552	1	-	GBM,UCEC
ENSG00000260442	ENST00000566956	MAST4	ENSG00000069020	ENST00000407621	-0.2768	66	-	GBM,UCEC
ENSG00000260442	ENST00000566956	MAST4	ENSG00000069020	ENST00000447738	-0.1002	1	-	GBM,UCEC
ENSG00000260442	ENST00000566956	MAST4	ENSG00000069020	ENST00000443808	-0.1186	1	-	GBM,UCEC
ENSG00000260442	ENST00000566956	CERT1	ENSG00000113163	ENST00000261415	-0.4047	253	-	GBM,LUSC
ENSG00000260442	ENST00000566956	LRRFIP1	ENSG00000124831	ENST00000289175	-0.1048	1	-	BLCA,LUSC
ENSG00000260442	ENST00000561547	INPP4A	ENSG00000040933	ENST00000409851	-0.1902	130	-	GBM
ENSG00000260442	ENST00000561547	INPP4A	ENSG00000040933	ENST00000409540	-0.3233	1	-	GBM
ENSG00000260442	ENST00000566956	IDS	ENSG00000010404	ENST00000428056	-0.1017	1	-	GBM,UCEC
ENSG00000260442	ENST00000566956	INPP4A	ENSG00000040933	ENST00000409851	-0.1902	155	-	GBM
ENSG00000260442	ENST00000566956	INPP4A	ENSG00000040933	ENST00000409540	-0.3233	1	-	GBM
ENSG00000260442	ENST00000561547	CYLD	ENSG00000083799	ENST00000564326	-0.1156	177	-	GBM
ENSG00000260442	ENST00000561547	CYLD	ENSG00000083799	ENST00000566206	-0.1301	379	-	GBM
ENSG00000260442	ENST00000561547	WDR7	ENSG00000091157	ENST00000589935	-0.2603	400	-	GBM
ENSG00000260442	ENST00000561547	SOS2	ENSG00000100485	ENST00000543680	-0.3091	221	-	COAD,READ
ENSG00000260442	ENST00000561547	SOS2	ENSG00000100485	ENST00000556452	-0.2192	325	-	COAD,READ
ENSG00000260442	ENST00000561547	PRKAR1A	ENSG00000108946	ENST00000585608	-0.1065	1	-	GBM
ENSG00000260442	ENST00000561547	PRKAR1A	ENSG00000108946	ENST00000588188	-0.1310	132	-	GBM
ENSG00000260442	ENST00000561547	UHRF1BP1L	ENSG00000111647	ENST00000548712	-0.1080	205	-	GBM
ENSG00000260442	ENST00000566956	CYLD	ENSG00000083799	ENST00000566206	-0.1367	9	-	GBM
ENSG00000260442	ENST00000566956	WDR7	ENSG00000091157	ENST00000589935	-0.2731	372	-	GBM
ENSG00000260442	ENST00000566956	WDR7	ENSG00000091157	ENST00000357574	-0.1004	1	-	GBM
ENSG00000260442	ENST00000566956	WDR7	ENSG00000091157	ENST00000615645	-0.1004	1	-	GBM
ENSG00000260442	ENST00000566956	SOS2	ENSG00000100485	ENST00000543680	-0.3091	246	-	COAD,READ
ENSG00000260442	ENST00000566956	SOS2	ENSG00000100485	ENST00000556452	-0.1296	197	-	COAD,READ
ENSG00000260442	ENST00000566956	PRKAR1A	ENSG00000108946	ENST00000588188	-0.1310	157	-	GBM
ENSG00000260442	ENST00000566956	UHRF1BP1L	ENSG00000111647	ENST00000548712	-0.1080	230	-	GBM
ENSG00000260442	ENST00000566956	UHRF1BP1L	ENSG00000111647	ENST00000547428	-0.1022	371	-	GBM
ENSG00000260442	ENST00000561547	MACF1	ENSG00000127603	ENST00000484793	-0.5167	1	-	GBM,CESC,UCEC,LUSC
ENSG00000260442	ENST00000561547	ITFG1	ENSG00000129636	ENST00000565262	-0.1400	370	-	GBM
ENSG00000260442	ENST00000566956	MACF1	ENSG00000127603	ENST00000484793	-0.2412	1	-	GBM,CESC,UCEC,LUSC
ENSG00000260442	ENST00000566956	ITFG1	ENSG00000129636	ENST00000565262	-0.1714	337	-	GBM
ENSG00000260442	ENST00000561547	SERINC3	ENSG00000132824	ENST00000255175	-0.1028	131	-	GBM
ENSG00000260442	ENST00000561547	TEX2	ENSG00000136478	ENST00000583501	-0.2523	381	-	GBM
ENSG00000260442	ENST00000561547	MINK1	ENSG00000141503	ENST00000574453	-0.1005	1	-	GBM
ENSG00000260442	ENST00000561547	MINK1	ENSG00000141503	ENST00000571207	-0.1005	1	-	GBM
ENSG00000260442	ENST00000561547	MINK1	ENSG00000141503	ENST00000576037	-0.1281	46	-	GBM
ENSG00000260442	ENST00000566956	SERINC3	ENSG00000132824	ENST00000255175	-0.1028	156	-	GBM
ENSG00000260442	ENST00000566956	TEX2	ENSG00000136478	ENST00000583501	-0.3854	1	-	GBM
ENSG00000260442	ENST00000566956	MINK1	ENSG00000141503	ENST00000574453	-0.1211	1	-	GBM
ENSG00000260442	ENST00000566956	MINK1	ENSG00000141503	ENST00000571207	-0.1211	1	-	GBM
ENSG00000260442	ENST00000566956	MINK1	ENSG00000141503	ENST00000576037	-0.1281	71	-	GBM
ENSG00000260442	ENST00000561547	NEMF	ENSG00000165525	ENST00000556672	-0.1357	211	-	GBM
ENSG00000260442	ENST00000561547	NDEL1	ENSG00000166579	ENST00000585098	-0.5540	63	-	GBM
ENSG00000260442	ENST00000561547	USP32	ENSG00000170832	ENST00000300896	-0.1375	137	-	GBM
ENSG00000260442	ENST00000561547	USP32	ENSG00000170832	ENST00000592339	-0.1375	148	-	GBM
ENSG00000260442	ENST00000561547	USP32	ENSG00000170832	ENST00000593071	-0.1710	88	-	GBM
ENSG00000260442	ENST00000566956	NEMF	ENSG00000165525	ENST00000556672	-0.1037	236	-	GBM
ENSG00000260442	ENST00000566956	NDEL1	ENSG00000166579	ENST00000585098	-3.0900	1	-	GBM
ENSG00000260442	ENST00000566956	USP32	ENSG00000170832	ENST00000300896	-0.1375	162	-	GBM
ENSG00000260442	ENST00000566956	USP32	ENSG00000170832	ENST00000592339	-0.1375	173	-	GBM
ENSG00000260442	ENST00000566956	USP32	ENSG00000170832	ENST00000593071	-0.1710	113	-	GBM
ENSG00000260442	ENST00000561547	ZDHHC17	ENSG00000186908	ENST00000552453	-0.1051	1	-	GBM,CESC,UCEC
ENSG00000260442	ENST00000561547	CIPC	ENSG00000198894	ENST00000555437	-0.1217	79	-	GBM,BLCA,COAD,READ
ENSG00000260442	ENST00000561547	CIPC	ENSG00000198894	ENST00000555611	-0.1358	10	-	GBM,BLCA,COAD,READ
ENSG00000260442	ENST00000561547	BCL2L2	ENSG00000129473	ENST00000556599	-0.2153	100	-	GBM,BLCA,UCEC,READ
ENSG00000260442	ENST00000561547	ROCK2	ENSG00000134318	ENST00000401753	-0.1032	310	-	GBM,BLCA,CESC,UCEC
ENSG00000260442	ENST00000566956	YPEL2	ENSG00000175155	ENST00000585166	-0.1856	1	-	GBM,UCEC
ENSG00000260442	ENST00000566956	CIPC	ENSG00000198894	ENST00000555437	-0.1211	23	-	GBM,BLCA,COAD,READ
ENSG00000260442	ENST00000566956	CIPC	ENSG00000198894	ENST00000555611	-0.1358	35	-	GBM,BLCA,COAD,READ
ENSG00000260442	ENST00000566956	BCL2L2	ENSG00000129473	ENST00000556599	-0.2153	125	-	GBM,BLCA,UCEC,READ
ENSG00000260442	ENST00000561547	MYCBP2	ENSG00000005810	ENST00000466564	-0.1124	303	-	GBM,BRCA
ENSG00000260442	ENST00000561547	FAM13B	ENSG00000031003	ENST00000425075	-0.1348	134	-	GBM,BLCA,CESC,LUSC,READ
ENSG00000260442	ENST00000561547	FAM13B	ENSG00000031003	ENST00000420893	-0.1348	134	-	GBM,BLCA,CESC,LUSC,READ
ENSG00000260442	ENST00000561547	PCNX1	ENSG00000100731	ENST00000439984	-0.1469	114	-	GBM,BRCA
ENSG00000260442	ENST00000561547	PCNX1	ENSG00000100731	ENST00000554691	-0.1166	79	-	GBM,BRCA
ENSG00000260442	ENST00000561547	PCNX1	ENSG00000100731	ENST00000555780	-0.1699	71	-	GBM,BRCA
ENSG00000260442	ENST00000561547	PLSCR4	ENSG00000114698	ENST00000446574	-0.1452	187	-	BLCA,UCEC,LUSC,BRCA,COAD,READ
ENSG00000260442	ENST00000561547	PLSCR4	ENSG00000114698	ENST00000493382	-0.1635	128	-	BLCA,UCEC,LUSC,BRCA,COAD,READ
ENSG00000260442	ENST00000561547	PKD2	ENSG00000118762	ENST00000508588	-0.1061	1	-	BLCA,CESC,UCEC,BRCA,READ
ENSG00000260442	ENST00000561547	PKD2	ENSG00000118762	ENST00000502363	-0.5900	270	-	BLCA,CESC,UCEC,BRCA,READ
ENSG00000260442	ENST00000566956	FAM13B	ENSG00000031003	ENST00000425075	-0.1348	159	-	GBM,BLCA,CESC,LUSC,READ
ENSG00000260442	ENST00000566956	FAM13B	ENSG00000031003	ENST00000420893	-0.1348	159	-	GBM,BLCA,CESC,LUSC,READ
ENSG00000260442	ENST00000566956	PCNX1	ENSG00000100731	ENST00000439984	-0.1249	217	-	GBM,BRCA
ENSG00000260442	ENST00000566956	PCNX1	ENSG00000100731	ENST00000554691	-0.1166	104	-	GBM,BRCA
ENSG00000260442	ENST00000566956	PCNX1	ENSG00000100731	ENST00000555780	-0.1699	96	-	GBM,BRCA
ENSG00000260442	ENST00000566956	PLSCR4	ENSG00000114698	ENST00000446574	-0.1452	212	-	BLCA,UCEC,LUSC,BRCA,COAD,READ
ENSG00000260442	ENST00000566956	PLSCR4	ENSG00000114698	ENST00000493382	-0.1635	153	-	BLCA,UCEC,LUSC,BRCA,COAD,READ
ENSG00000260442	ENST00000566956	PKD2	ENSG00000118762	ENST00000508588	-0.1079	1	-	BLCA,CESC,UCEC,BRCA,READ
ENSG00000260442	ENST00000566956	PKD2	ENSG00000118762	ENST00000502363	-0.5900	295	-	BLCA,CESC,UCEC,BRCA,READ
ENSG00000260442	ENST00000561547	CLMN	ENSG00000165959	ENST00000556441	-0.1963	174	-	GBM,COAD,READ
ENSG00000260442	ENST00000566956	CLMN	ENSG00000165959	ENST00000556441	-0.1963	199	-	GBM,COAD,READ
ENSG00000260442	ENST00000561547	AHNAK	ENSG00000124942	ENST00000530124	-0.1225	78	-	BLCA,UCEC,LUSC,BRCA,COAD,READ
ENSG00000260442	ENST00000561547	AHNAK	ENSG00000124942	ENST00000257247	-0.1204	1	-	BLCA,UCEC,LUSC,BRCA,COAD,READ
ENSG00000260442	ENST00000561547	GCC2	ENSG00000135968	ENST00000614209	-0.6133	432	-	GBM
ENSG00000260442	ENST00000561547	KIAA1109	ENSG00000138688	ENST00000419325	-0.1689	428	-	GBM,LUSC
ENSG00000260442	ENST00000561547	KIAA1109	ENSG00000138688	ENST00000442707	-0.3117	444	-	GBM,LUSC
ENSG00000260442	ENST00000561547	FCHO2	ENSG00000157107	ENST00000287761	-0.3066	1	-	LUSC,READ
ENSG00000260442	ENST00000566956	AHNAK	ENSG00000124942	ENST00000530124	-0.1225	103	-	BLCA,UCEC,LUSC,BRCA,COAD,READ
ENSG00000260442	ENST00000566956	AHNAK	ENSG00000124942	ENST00000257247	-0.1194	1	-	BLCA,UCEC,LUSC,BRCA,COAD,READ
ENSG00000260442	ENST00000566956	GCC2	ENSG00000135968	ENST00000614209	-0.6133	404	-	GBM
ENSG00000260442	ENST00000566956	KIAA1109	ENSG00000138688	ENST00000419325	-0.1689	400	-	GBM,LUSC
ENSG00000260442	ENST00000566956	KIAA1109	ENSG00000138688	ENST00000442707	-0.3117	416	-	GBM,LUSC
ENSG00000260442	ENST00000566956	FCHO2	ENSG00000157107	ENST00000287761	-0.3066	1	-	LUSC,READ
ENSG00000260442	ENST00000566956	MTMR10	ENSG00000166912	ENST00000566981	-0.1017	1	-	GBM,LUSC,BRCA,READ
ENSG00000260442	ENST00000561547	ITSN2	ENSG00000198399	ENST00000449392	-0.1419	25	-	GBM
ENSG00000260442	ENST00000561547	PPP1R12A	ENSG00000058272	ENST00000550299	-0.2340	182	-	BLCA,CESC,UCEC,READ
ENSG00000260442	ENST00000561547	PPP1R12A	ENSG00000058272	ENST00000546369	-0.1500	86	-	BLCA,CESC,UCEC,READ
ENSG00000260442	ENST00000566956	ITSN2	ENSG00000198399	ENST00000449392	-0.1419	50	-	GBM
ENSG00000260442	ENST00000566956	PPP1R12A	ENSG00000058272	ENST00000550299	-0.2340	207	-	BLCA,CESC,UCEC,READ
ENSG00000260442	ENST00000566956	PPP1R12A	ENSG00000058272	ENST00000546369	-0.1500	111	-	BLCA,CESC,UCEC,READ
ENSG00000260442	ENST00000561547	IL6ST	ENSG00000134352	ENST00000502326	-0.1788	68	-	BLCA,CESC,UCEC,LUSC,COAD,READ
ENSG00000260442	ENST00000561547	GNPTAB	ENSG00000111670	ENST00000550718	-0.1182	1	-	GBM,READ
ENSG00000260442	ENST00000561547	GNPTAB	ENSG00000111670	ENST00000549940	-0.1091	189	-	GBM,READ
ENSG00000260442	ENST00000561547	VPS4B	ENSG00000119541	ENST00000591519	-0.1712	493	-	COAD,READ
ENSG00000260442	ENST00000566956	IL6ST	ENSG00000134352	ENST00000502326	-0.1788	93	-	BLCA,CESC,UCEC,LUSC,COAD,READ
ENSG00000260442	ENST00000566956	RIOK3	ENSG00000101782	ENST00000581585	-0.1269	180	-	COAD,READ
ENSG00000260442	ENST00000566956	RIOK3	ENSG00000101782	ENST00000577501	-0.1269	260	-	COAD,READ
ENSG00000260442	ENST00000566956	GNPTAB	ENSG00000111670	ENST00000549738	-0.1857	1	-	GBM,READ
ENSG00000260442	ENST00000566956	GNPTAB	ENSG00000111670	ENST00000550718	-0.1182	1	-	GBM,READ
ENSG00000260442	ENST00000566956	GNPTAB	ENSG00000111670	ENST00000549940	-0.1091	214	-	GBM,READ
ENSG00000260442	ENST00000566956	VPS4B	ENSG00000119541	ENST00000591519	-0.1712	465	-	COAD,READ

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000260442.4	ENST00000561547.4	93	461	180
ENSG00000260442.4	ENST00000566956.1	140	92	514

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential