lncRNAfunc Logo

Home

Download

Statistics

Landscape

Help

Contact

Center for Computational Systems Medicine
leaf

lncRNA summary

leaf

lncRNA structure and expression level

leaf

lncRNA-Protein interaction

leaf

lncRNA-DNA interaction

leaf

lncRNA-RNA interaction

leaf

Variants in lncRNA

leaf

lncRNAs regulate the target genes through functioning as enhancers

leaf

lncRNAs regulate the target genes through recruiting transcript factors

leaf

lncRNAs regulate the alternative splicing events through interacting with splicing factor

leaf

lncRNAs regulate mRNA through targeting the 3'-UTR region

leaf

lncRNAs regulate mRNA by competing with miRNA

leaf

lncRNA coding potential

lncRNA: ENSG00000260160

Summary for CTC-471J1.2

check button Gene summary

Gene informationEnsembl ID

ENSG00000260160

Gene symbol

CTC-471J1.2

Gene name
HGNC
Entrez ID
Gene typesense_overlapping
Synonyms
UniProtAcc

Top

Structure and expression level for CTC-471J1.2

check buttonAS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure.
UCSC result

check buttonDifferentially expressed gene analysis between cancer and normal samples.
DEG result
Ensembl IDBase meanlog2FC(AD/control)lfcSEStatP-valueAdjc.p-valueDEG direction Cancer type
ENSG000002601604.940381e+011.059090e+003.379759e-013.133627e+001.726601e-035.610200e-03UPCHOL
ENSG000002601605.985080e+011.389454e+001.166959e-011.190663e+011.090000e-321.270000e-31UPKIRC
ENSG000002601605.598597e+011.510642e+001.832142e-018.245224e+001.650000e-161.940000e-15UPKICH
ENSG000002601603.354392e+011.346993e+001.689656e-017.971994e+001.560000e-151.850000e-14UPLIHC

check buttonCorrelation between lncRNAs and cancer stages.
LncRNA Ensembl IDCorrelationP-valueCancer TypeAdjc.p-value
ENSG000002601607.095857e-014.837846e-08CHOL4.520698e-06
ENSG000002601604.431995e-011.364144e-05KICH2.870756e-05
ENSG000002601603.414680e-014.545180e-18KIRC2.727108e-17
ENSG000002601603.308205e-011.138852e-11LIHC5.402248e-11
ENSG000002601603.775278e-014.162601e-20PRAD9.290169e-19

Top

lncRNA-Protein interaction for CTC-471J1.2

lncrna_protein
check buttonlncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).
LncRNA Ensembl IDLncRNA ENST IDLncRNA NameProtein Ensembl IDProtein NameCatRAPID ScoreLncpro ScoreUniPortIDGene SubtypePublic source

check buttonlncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).
LncRNA Ensembl IDLncRNA ENST IDLncRNA NameProtein Ensembl IDProtein NameCatRAPID ScoreLncpro ScoreUniPortIDGene SubtypePublic source

check buttonlncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).
LncRNA Ensembl IDLncRNA ENST IDLncRNA NameProtein Ensembl IDProtein NameCatRAPID ScoreLncpro ScoreUniPortIDGene SubtypePublic source

Top

lncRNA-DNA interaction for CTC-471J1.2

lncrna_DNA
check buttonlncRNA targets the enhancer region and positively regulates the gene expression.

check buttonlncRNA targets the promoter region and positively regulates the gene expression.

check buttonlncRNA targets the promoter region and negatively regulates the gene expression.

Top

lncRNA-RNA interaction for CTC-471J1.2

lncrna_RNA
check buttonlncRNA targets the 3'UTR region and negatively regulates the mRNA.
Only predicted by lncTar
PSMB5,ASB8,PARP1,NEK4,TUBA1B,TRAP1,VPS26C,PSMD2,ARID1A,VPS4B,MYH9,RNF123,PFKM,BECN1,TOM1L1,NARS1,FAM104A,DAG1,SNX6,GNL3L,RRM1,GBA,TRIM37,TPM3,FASTKD5,MPPE1,STAMBP,TUBA1C,IARS1,BPNT1,CPT2,VPS26A,GPN1,SLC25A5,CAP1,CLTC,ATRN,SDHC,L2HGDH,ATP2A2,ALG12,VGLL4,CTNNB1,NBR1,THTPA,SUMF2,BCL2L13,SNX19,ATP6V0D1,HSPA8,GART,ETFA,SNX29,ASCC1,ILK,CDK4,ERLIN2,COPS4,CCT5,RPRD1B,SLC7A6OS,NOMO2,COPA,PC,RAB29,IQGAP1,PCCB,INTS5,FERMT2,STAT3,CLPB,CIPC,API5,STRAP,ETFDH,ZFPL1,PRMT5,LYPLA1,MFSD11,ATP5PB,NOLC1,MPDZ,SLC25A3,PSME3,AP2B1,IKBKG,ALAS1,CCDC25,HADHB,CNIH1,ACACA,PRKAR2A,SEC14L1,RAB5C,PRPS1,SNRNP200,BRCC3,NIPA2,ZFAND3,HSPG2,CCT2,TP53BP2,SLC35A5,KBTBD4,ZC3H15,DLAT,MFSD1,HMGCR,CHTF8,MSH6,MAIP1,SF3A1,BTBD1,TMLHE,DDB1,ABHD5,AZI2,ST13,MIF4GD,SERINC3,OAT,SLC39A14,PIGS,WASHC5,PIGN,ALDH5A1,MRPL49,NSF,FASTKD2,SEC23B,PAIP2,OGDH,EIF3L,PLS1,HBP1,EIF4G2,HAUS4,UTP18,LARS2,CUL2,CS,CAB39,CAPN1,ACADM,ACTN4,CTNNA1,KCTD9,ABCE1,ATL1,CARM1,RTN4,HCCS,TEX2,DDX1,ALDH9A1,ITFG1,USP14,AMBRA1,RUSF1,AIMP2,ECD,UBC,ATF1,ACAT1,HAUS2,PSMD1,GLYR1,CRADD,TAF1A,MCFD2,VDAC2,NDUFS1,GATM
Exist in public source
NA

check buttonlncRNA targets the skipped exon region.
-lncRNA and exonskipping events are positively correlated.
LncRNA Ensembl IDLncRNA ENST IDExon IDSkipped ExondGndGGene name with skipped exonTransID with skipped exonORF mutation

-lncRNA and exonskipping events are negatively correlated.
lncRNA and exonskipping events negative correlated
LncRNA Ensembl IDLncRNA ENST IDExon IDSkipped ExondGndGGene name with skipped exonTransID with skipped exonLOF
ENSG00000260160ENST00000569091exon_skip_319223chr19:43526200-43526349-14.56-0.1111ETHE1ENST00000292147Frame-shift
ENSG00000260160ENST00000569091exon_skip_66482chr11:126274926-126275021-10.31-0.1586FOXRED1ENST00000263578Frame-shift
ENSG00000260160ENST00000569091exon_skip_382458chr3:38131595-38131638-4.60-0.1643ACAA1ENST00000333167Frame-shift
ENSG00000260160ENST00000569091exon_skip_9446chr1:147270931-147271005-9.60-0.1477CHD1LENST00000369258Frame-shift
ENSG00000260160ENST00000569091exon_skip_74009chr11:64773429-64773505-8.29-0.1184SF1ENST00000377390Frame-shift
ENSG00000260160ENST00000569091exon_skip_81515chr12:42351884-42352049-8.34-0.1127PPHLN1ENST00000395568In-frame
ENSG00000260160ENST00000569091exon_skip_92074chr12:50142052-50142110-6.87-0.1493CERS5ENST00000317551Frame-shift
ENSG00000260160ENST00000569091exon_skip_108095chr14:73955450-73955509-7.13-1.0186COQ6ENST00000334571Frame-shift
ENSG00000260160ENST00000569091exon_skip_114365chr14:74290026-74290118-7.70-0.1069ABCD4ENST00000356924Frame-shift
ENSG00000260160ENST00000569091exon_skip_290158chr17:42953723-42953778-5.37-0.1492AARSD1ENST00000427569Frame-shift
ENSG00000260160ENST00000569091exon_skip_300663chr19:1425877-1425960-7.69-0.1131DAZAP1ENST00000233078Frame-shift
ENSG00000260160ENST00000569091exon_skip_302168chr19:10680345-10680443-9.81-0.1326ILF3ENST00000590261Frame-shift
ENSG00000260160ENST00000569091exon_skip_324294chr2:27774423-27774530-11.23-0.1422MRPL33ENST00000296102Frame-shift
ENSG00000260160ENST00000569091exon_skip_327433chr2:86125794-86125880-8.00-0.2222PTCD3ENST00000254630Frame-shift
ENSG00000260160ENST00000569091exon_skip_339830chr2:69423581-69423717-9.22-0.1036NFU1ENST00000410022Frame-shift
ENSG00000260160ENST00000569091exon_skip_361485chr21:29008239-29008307-6.56-0.1929RWDD2BENST00000493196Frame-shift
ENSG00000260160ENST00000569091exon_skip_370518chr22:50247691-50247776-11.37-0.1805HDAC10ENST00000216271Frame-shift
ENSG00000260160ENST00000569091exon_skip_370525chr22:50250426-50250523-16.58-0.1822HDAC10ENST00000216271Frame-shift
ENSG00000260160ENST00000569091exon_skip_378467chr3:143023974-143024018-9.38-0.3127U2SURPENST00000473835Frame-shift
ENSG00000260160ENST00000569091exon_skip_380242chr3:186784961-186785101-10.28-0.1448EIF4A2ENST00000323963Frame-shift
ENSG00000260160ENST00000569091exon_skip_387016chr3:121788283-121788432-10.71-0.1116IQCB1ENST00000310864Frame-shift
ENSG00000260160ENST00000569091exon_skip_430434chr4:82356536-82356683-11.40-0.1373HNRNPDENST00000313899In-frame
ENSG00000260160ENST00000569091exon_skip_444499chr5:138164086-138164133-5.35-0.2675BRD8ENST00000254900Frame-shift
ENSG00000260160ENST00000569091exon_skip_462160chr6:127316449-127316502-5.74-0.3189ECHDC1ENST00000531967Frame-shift
ENSG00000260160ENST00000569091exon_skip_470226chr7:103307595-103307708-8.44-0.1068PMPCBENST00000249269Frame-shift
ENSG00000260160ENST00000569091exon_skip_374581chr3:50110378-50110463-9.85-0.1263RBM5ENST00000347869Frame-shift

check buttonlncRNA targets by miRNA.
lncRNA targets by miRNA
LncRNA Ensembl IDmiRNA IDLncRNA ENST IDBinding site in lncRNAScoreEnergyAlign LenPublic source
ENSG00000260160hsa-mir-139ENST00000569091chr19:52058732-52058795150.00-64.9265NA
ENSG00000260160hsa-mir-139ENST00000569091chr19:52058552-52058624149.00-52.7769NA
ENSG00000260160hsa-mir-378aENST00000569091chr19:52058579-52058643161.00-50.6765NA
ENSG00000260160hsa-mir-378aENST00000569091chr19:52058691-52058755145.00-55.1758NA
ENSG00000260160hsa-mir-378aENST00000569091chr19:52059063-52059124144.00-60.3757NA

Top

Variants for CTC-471J1.2

check buttonRNA A-to-I editing events in lncRNA.
LncRNAediting IDLncRNA Ensembl IDChromosomeEditing PositionStrandGene TypeGene NameTranscript IDTranscript TypeTranscript Name
LncEditing_360783ENSG00000260160.1chr1952059097-sense_overlappingCTC-471J1.2ENST00000569091.1sense_overlappingCTC-471J1.2-001
LncEditing_360784ENSG00000260160.1chr1952059109-sense_overlappingCTC-471J1.2ENST00000569091.1sense_overlappingCTC-471J1.2-001
LncEditing_360788ENSG00000260160.1chr1952059159-sense_overlappingCTC-471J1.2ENST00000569091.1sense_overlappingCTC-471J1.2-001
LncEditing_360807ENSG00000260160.1chr1952059298-sense_overlappingCTC-471J1.2ENST00000569091.1sense_overlappingCTC-471J1.2-001
LncEditing_360816ENSG00000260160.1chr1952059692-sense_overlappingCTC-471J1.2ENST00000569091.1sense_overlappingCTC-471J1.2-001
LncEditing_360868ENSG00000260160.1chr1952063014-sense_overlappingCTC-471J1.2ENST00000569091.1sense_overlappingCTC-471J1.2-001
LncEditing_360898ENSG00000260160.1chr1952063423-sense_overlappingCTC-471J1.2ENST00000569091.1sense_overlappingCTC-471J1.2-001
LncEditing_360906ENSG00000260160.1chr1952063486-sense_overlappingCTC-471J1.2ENST00000569091.1sense_overlappingCTC-471J1.2-001
LncEditing_360907ENSG00000260160.1chr1952063487-sense_overlappingCTC-471J1.2ENST00000569091.1sense_overlappingCTC-471J1.2-001
LncEditing_360908ENSG00000260160.1chr1952063493-sense_overlappingCTC-471J1.2ENST00000569091.1sense_overlappingCTC-471J1.2-001
LncEditing_360922ENSG00000260160.1chr1952063552-sense_overlappingCTC-471J1.2ENST00000569091.1sense_overlappingCTC-471J1.2-001
LncEditing_360933ENSG00000260160.1chr1952063627-sense_overlappingCTC-471J1.2ENST00000569091.1sense_overlappingCTC-471J1.2-001

check buttonEdited-associated DElncRNAs in cancer.
Differentially expressed gene
LncRNA Ensembl IDLncRNA IndexCancer TypeChr_Postion_StrandAVE1AVE2log2FCW-valueP-valueAdjc.p-valueChange
ENSG00000260160LncEditing_360898UCECchr19_52063423_-3.175953e+001.573460e+009.869239e-011.252074e+015.749321e-366.817052e-35UP
ENSG00000260160LncEditing_360906UCECchr19_52063486_-3.352034e+001.759133e+001.075070e+001.132697e+019.648749e-307.507933e-29UP
ENSG00000260160LncEditing_360907UCECchr19_52063487_-3.454534e+002.047515e+001.325176e+006.779308e+001.207526e-112.464542e-11UP
ENSG00000260160LncEditing_360922UCECchr19_52063552_-3.985791e+001.835127e+008.936659e-011.008242e+016.608119e-243.427962e-23UP
ENSG00000260160LncEditing_360898SARCchr19_52063423_-2.863846e+001.792735e+001.479746e+006.960197e+003.397966e-127.623208e-12UP
ENSG00000260160LncEditing_360906SARCchr19_52063486_-3.391936e+002.052162e+001.379379e+007.219720e+005.209455e-131.330524e-12UP
ENSG00000260160LncEditing_360922SARCchr19_52063552_-3.469981e+002.035695e+001.299704e+006.772935e+001.261954e-112.587006e-11UP
ENSG00000260160LncEditing_360788UCSchr19_52059159_-4.513832e+002.468127e+001.148190e+002.198085e+002.794303e-023.072914e-02UP
ENSG00000260160LncEditing_360898UCSchr19_52063423_-3.319189e+001.536762e+009.001411e-014.781102e+001.743372e-062.334873e-05UP
ENSG00000260160LncEditing_360906UCSchr19_52063486_-4.140968e+001.885547e+008.810690e-014.681045e+002.854165e-063.304376e-05UP
ENSG00000260160LncEditing_360922UCSchr19_52063552_-3.861429e+001.924389e+009.952883e-014.391844e+001.123934e-059.366119e-05UP
ENSG00000260160LncEditing_360933UCSchr19_52063627_-4.725723e+002.253449e+009.359791e-013.826019e+001.302322e-045.251298e-04UP
ENSG00000260160LncEditing_360898KIRCchr19_52063423_-2.153344e+001.293449e+001.359885e+009.802329e+001.100196e-223.073104e-22UP
ENSG00000260160LncEditing_360906KIRCchr19_52063486_-2.485815e+001.414254e+001.228988e+009.153043e+005.535197e-201.301472e-19UP
ENSG00000260160LncEditing_360922KIRCchr19_52063552_-2.667819e+001.453825e+001.141803e+007.583838e+003.354799e-146.124362e-14UP
ENSG00000260160LncEditing_360898DLBCchr19_52063423_-2.147577e+009.162506e-018.137388e-014.149713e+003.328931e-053.022670e-04UP
ENSG00000260160LncEditing_360906DLBCchr19_52063486_-2.400576e+001.173379e+009.683250e-012.585205e+009.732125e-031.463041e-02UP
ENSG00000260160LncEditing_360922DLBCchr19_52063552_-2.594110e+001.239458e+009.384995e-012.611165e+009.023439e-031.384000e-02UP
ENSG00000260160LncEditing_360783GBMchr19_52059097_-2.703048e+001.399139e+001.052578e+005.289794e+001.224540e-072.797474e-07UP
ENSG00000260160LncEditing_360784GBMchr19_52059109_-2.513742e+001.360612e+001.129203e+006.078350e+001.214258e-094.180147e-09UP
ENSG00000260160LncEditing_360898GBMchr19_52063423_-2.067248e+001.328074e+001.566475e+006.079941e+001.202270e-094.156568e-09UP
ENSG00000260160LncEditing_360906GBMchr19_52063486_-1.950306e+001.305150e+001.725672e+005.728322e+001.014290e-082.781560e-08UP
ENSG00000260160LncEditing_360907GBMchr19_52063487_-2.212086e+001.452635e+001.648166e+003.394127e+006.884772e-048.716402e-04UP
ENSG00000260160LncEditing_360908GBMchr19_52063493_-2.288391e+001.437296e+001.490364e+004.355932e+001.325021e-052.161173e-05UP
ENSG00000260160LncEditing_360922GBMchr19_52063552_-2.199599e+001.406639e+001.550416e+004.448292e+008.655564e-061.449762e-05UP
ENSG00000260160LncEditing_360898MESOchr19_52063423_-2.824887e+001.660245e+001.304126e+004.902107e+009.481425e-077.020769e-06UP
ENSG00000260160LncEditing_360906MESOchr19_52063486_-3.169427e+001.956586e+001.437022e+004.145442e+003.391592e-059.502569e-05UP
ENSG00000260160LncEditing_360907MESOchr19_52063487_-3.635276e+002.126889e+001.293126e+003.701527e+002.143055e-044.384804e-04UP
ENSG00000260160LncEditing_360922MESOchr19_52063552_-3.043709e+001.977992e+001.608251e+004.297879e+001.724401e-055.603646e-05UP
ENSG00000260160LncEditing_360898BLCAchr19_52063423_-3.145079e+001.390758e+008.494553e-011.105236e+012.135272e-282.903969e-27UP
ENSG00000260160LncEditing_360906BLCAchr19_52063486_-3.796020e+001.778459e+009.141939e-011.024104e+011.298303e-241.217718e-23UP
ENSG00000260160LncEditing_360907BLCAchr19_52063487_-3.869124e+002.193423e+001.221266e+007.029791e+002.068431e-124.106665e-12UP
ENSG00000260160LncEditing_360908BLCAchr19_52063493_-3.674443e+002.238579e+001.398715e+006.051494e+001.435089e-092.230538e-09UP
ENSG00000260160LncEditing_360922BLCAchr19_52063552_-3.774652e+001.855806e+009.762783e-019.848075e+006.986941e-234.751120e-22UP
ENSG00000260160LncEditing_360933BLCAchr19_52063627_-4.072390e+002.219548e+001.142061e+006.874937e+006.201722e-121.187936e-11UP
ENSG00000260160LncEditing_360898LGGchr19_52063423_-1.991962e+001.160273e+001.282502e+001.060091e+012.951071e-261.278194e-25UP
ENSG00000260160LncEditing_360906LGGchr19_52063486_-2.461485e+001.318542e+001.110390e+008.351731e+006.726959e-171.609910e-16UP
ENSG00000260160LncEditing_360922LGGchr19_52063552_-2.475955e+001.314334e+001.094507e+008.365588e+005.981570e-171.451199e-16UP
ENSG00000260160LncEditing_360784ACCchr19_52059109_-5.819832e+002.592874e+008.573202e-013.835160e+001.254827e-043.454147e-04UP
ENSG00000260160LncEditing_360898ACCchr19_52063423_-3.691039e+002.087372e+001.216043e+004.101457e+004.105564e-051.501464e-04UP
ENSG00000260160LncEditing_360906ACCchr19_52063486_-4.658237e+002.442947e+001.073927e+003.662382e+002.498804e-045.978447e-04UP
ENSG00000260160LncEditing_360908ACCchr19_52063493_-4.494632e+002.691397e+001.351630e+003.007816e+002.631325e-033.889765e-03UP
ENSG00000260160LncEditing_360922ACCchr19_52063552_-4.487865e+002.521379e+001.202188e+003.464445e+005.313263e-041.054415e-03UP
ENSG00000260160LncEditing_360898COADchr19_52063423_-2.475831e+001.126086e+008.798204e-018.526747e+001.505202e-173.958124e-17UP
ENSG00000260160LncEditing_360898LUSCchr19_52063423_-1.750935e+008.976192e-011.037398e+001.130760e+011.203371e-298.097681e-29UP
ENSG00000260160LncEditing_360906LUSCchr19_52063486_-1.896770e+001.045788e+001.164206e+007.077507e+001.467710e-122.174634e-12UP
ENSG00000260160LncEditing_360922LUSCchr19_52063552_-2.014441e+001.031740e+001.035948e+007.626582e+002.410600e-143.932443e-14UP
ENSG00000260160LncEditing_360898KICHchr19_52063423_-1.749143e+009.446707e-011.125157e+004.213886e+002.510138e-051.028101e-04UP
ENSG00000260160LncEditing_360906KICHchr19_52063486_-2.335467e+001.163663e+009.949884e-014.888388e+001.016651e-068.672654e-06UP
ENSG00000260160LncEditing_360922KICHchr19_52063552_-2.097233e+001.275014e+001.392808e+002.792593e+005.228748e-037.918902e-03UP
ENSG00000260160LncEditing_360898SKCMchr19_52063423_-2.044861e+009.872516e-019.519159e-011.137692e+015.449303e-303.343891e-29UP
ENSG00000260160LncEditing_360922SKCMchr19_52063552_-2.480197e+001.152969e+009.048946e-018.758818e+001.973085e-183.474345e-18UP
ENSG00000260160LncEditing_360783PCPGchr19_52059097_-3.706389e+002.649213e+002.064193e+003.734752e+001.879000e-042.585141e-04UP
ENSG00000260160LncEditing_360788PCPGchr19_52059159_-4.473411e+002.565538e+001.246706e+004.409538e+001.035913e-051.830740e-05UP
ENSG00000260160LncEditing_360816PCPGchr19_52059692_-3.361640e+002.678542e+003.051408e+002.571821e+001.011652e-021.117415e-02UP
ENSG00000260160LncEditing_360898PCPGchr19_52063423_-3.212568e+001.856683e+001.264224e+007.453672e+009.077783e-141.102951e-12UP
ENSG00000260160LncEditing_360906PCPGchr19_52063486_-3.541205e+002.448739e+001.878988e+004.628291e+003.686963e-067.082466e-06UP
ENSG00000260160LncEditing_360908PCPGchr19_52063493_-3.888009e+002.590068e+001.706363e+003.557251e+003.747560e-044.989902e-04UP
ENSG00000260160LncEditing_360922PCPGchr19_52063552_-3.457083e+002.327161e+001.751361e+006.015105e+001.797706e-097.871039e-09UP
ENSG00000260160LncEditing_360898KIRPchr19_52063423_-2.331482e+001.084866e+009.060185e-018.131289e+004.247507e-162.050678e-15UP
ENSG00000260160LncEditing_360906KIRPchr19_52063486_-2.711879e+001.223859e+008.711899e-016.319171e+002.629700e-105.816430e-10UP
ENSG00000260160LncEditing_360898THCAchr19_52063423_-1.978039e+001.456145e+002.262870e+007.283752e+003.246623e-137.266252e-13UP
ENSG00000260160LncEditing_360906THCAchr19_52063486_-2.384446e+001.541017e+001.587877e+007.999957e+001.244622e-153.335368e-15UP
ENSG00000260160LncEditing_360922THCAchr19_52063552_-2.456665e+001.556243e+001.518295e+007.742427e+009.753707e-152.391855e-14UP
ENSG00000260160LncEditing_360898CHOLchr19_52063423_-3.029265e+001.637414e+001.126699e+003.215408e+001.302590e-034.590948e-03UP
ENSG00000260160LncEditing_360906CHOLchr19_52063486_-3.599073e+001.665069e+008.992454e-013.794772e+001.477792e-041.567159e-03UP
ENSG00000260160LncEditing_360922CHOLchr19_52063552_-3.155493e+001.910061e+001.380745e+002.436981e+001.481045e-022.056327e-02UP
ENSG00000260160LncEditing_360933CHOLchr19_52063627_-4.022239e+001.971140e+009.718466e-013.041904e+002.350866e-036.336023e-03UP
ENSG00000260160LncEditing_360784THYMchr19_52059109_-4.331013e+002.710303e+001.478743e+004.024956e+005.698593e-051.050557e-04UP
ENSG00000260160LncEditing_360898THYMchr19_52063423_-3.413115e+002.088230e+001.410818e+005.920923e+003.201403e-091.994437e-08UP
ENSG00000260160LncEditing_360906THYMchr19_52063486_-3.645663e+002.414859e+001.682815e+005.968802e+002.390021e-091.523990e-08UP
ENSG00000260160LncEditing_360907THYMchr19_52063487_-3.937003e+002.740038e+001.912405e+003.879277e+001.047676e-041.820001e-04UP
ENSG00000260160LncEditing_360908THYMchr19_52063493_-3.891442e+002.747116e+001.990497e+003.848118e+001.190289e-042.037484e-04UP
ENSG00000260160LncEditing_360922THYMchr19_52063552_-3.716372e+002.561226e+001.861989e+004.403249e+001.066414e-052.275577e-05UP
ENSG00000260160LncEditing_360933THYMchr19_52063627_-4.554545e+002.680499e+001.307522e+004.462093e+008.116306e-061.788227e-05UP
ENSG00000260160LncEditing_360788OVchr19_52059159_-1.886591e+001.070450e+001.223145e+006.708929e+001.960576e-113.819384e-11UP
ENSG00000260160LncEditing_360898OVchr19_52063423_-1.723463e+009.949142e-011.261565e+008.068699e+007.105105e-162.124600e-15UP
ENSG00000260160LncEditing_360906OVchr19_52063486_-1.763242e+001.006708e+001.236729e+007.824099e+005.113059e-151.424684e-14UP
ENSG00000260160LncEditing_360907OVchr19_52063487_-1.798120e+001.078792e+001.356718e+005.409510e+006.319743e-088.953781e-08UP
ENSG00000260160LncEditing_360908OVchr19_52063493_-1.932801e+001.067541e+001.167677e+006.320883e+002.600725e-104.554985e-10UP
ENSG00000260160LncEditing_360922OVchr19_52063552_-1.805899e+001.011873e+001.196617e+007.559691e+004.040293e-141.029100e-13UP
ENSG00000260160LncEditing_360933OVchr19_52063627_-1.864051e+001.031230e+001.170857e+007.346244e+002.038536e-134.868659e-13UP
ENSG00000260160LncEditing_360788TGCTchr19_52059159_-5.982807e+002.806328e+009.156344e-014.409934e+001.034019e-051.583947e-05UP
ENSG00000260160LncEditing_360816TGCTchr19_52059692_-3.436167e+003.131884e+007.475542e+002.733774e+006.261297e-036.865604e-03UP
ENSG00000260160LncEditing_360898TGCTchr19_52063423_-3.642399e+001.977616e+001.134911e+005.580528e+002.397894e-085.359228e-08UP
ENSG00000260160LncEditing_360906TGCTchr19_52063486_-4.085618e+002.051438e+001.006118e+006.741611e+001.566401e-116.743769e-11UP
ENSG00000260160LncEditing_360907TGCTchr19_52063487_-4.818608e+002.301559e+009.380818e-017.331096e+002.282775e-131.530582e-12UP
ENSG00000260160LncEditing_360908TGCTchr19_52063493_-5.193185e+002.404043e+008.999627e-016.256576e+003.935217e-101.297987e-09UP
ENSG00000260160LncEditing_360922TGCTchr19_52063552_-4.344725e+002.193980e+001.014493e+006.813300e+009.538475e-124.287073e-11UP
ENSG00000260160LncEditing_360933TGCTchr19_52063627_-4.941980e+002.386563e+009.522403e-015.982404e+002.198678e-095.916180e-09UP
ENSG00000260160LncEditing_360898READchr19_52063423_-1.908253e+008.224103e-018.235046e-016.644253e+003.047587e-112.184104e-10UP
ENSG00000260160LncEditing_360898LUADchr19_52063423_-2.490232e+001.614789e+001.600168e+009.190565e+003.907845e-201.175067e-19UP
ENSG00000260160LncEditing_360906LUADchr19_52063486_-2.548198e+001.835664e+002.113382e+006.567961e+005.100888e-117.695764e-11UP
ENSG00000260160LncEditing_360922LUADchr19_52063552_-2.895519e+001.774557e+001.415703e+008.685718e+003.763566e-189.104044e-18UP
ENSG00000260160LncEditing_360898STADchr19_52063423_-1.968263e+009.630689e-019.697326e-018.877572e+006.833584e-192.637653e-18UP
ENSG00000260160LncEditing_360906STADchr19_52063486_-1.961461e+001.017162e+001.055543e+007.529162e+005.106711e-141.133769e-13UP
ENSG00000260160LncEditing_360908STADchr19_52063493_-2.206662e+001.073014e+009.613561e-016.581098e+004.669866e-117.989543e-11UP
ENSG00000260160LncEditing_360922STADchr19_52063552_-2.180558e+001.035135e+009.303384e-018.123134e+004.542969e-161.227459e-15UP
ENSG00000260160LncEditing_360898CESCchr19_52063423_-2.439538e+001.070162e+008.411995e-011.088424e+011.370431e-273.225783e-26UP
ENSG00000260160LncEditing_360906CESCchr19_52063486_-2.854510e+001.340366e+009.169126e-019.648940e+004.966646e-225.628866e-21UP
ENSG00000260160LncEditing_360907CESCchr19_52063487_-3.024920e+001.620881e+001.110964e+005.886728e+003.939155e-097.430657e-09UP
ENSG00000260160LncEditing_360908CESCchr19_52063493_-3.058006e+001.637454e+001.109709e+005.895848e+003.727613e-097.084780e-09UP
ENSG00000260160LncEditing_360922CESCchr19_52063552_-2.964460e+001.360952e+008.903509e-019.158236e+005.275275e-204.483983e-19UP
ENSG00000260160LncEditing_360933CESCchr19_52063627_-3.303099e+001.614014e+009.678976e-016.199080e+005.679429e-101.206879e-09UP
ENSG00000260160LncEditing_360783PRADchr19_52059097_-4.628539e+003.534273e+002.569749e+005.099937e+003.397661e-074.885687e-07UP
ENSG00000260160LncEditing_360784PRADchr19_52059109_-4.973535e+003.334097e+001.733176e+008.830928e+001.038104e-183.630291e-18UP
ENSG00000260160LncEditing_360788PRADchr19_52059159_-5.197648e+003.364214e+001.593398e+008.983389e+002.625512e-199.519493e-19UP
ENSG00000260160LncEditing_360898PRADchr19_52063423_-3.900256e+002.698238e+001.881286e+005.991456e+002.079705e-093.636408e-09UP
ENSG00000260160LncEditing_360906PRADchr19_52063486_-4.253385e+003.059105e+002.103041e+008.264750e+001.399876e-164.136634e-16UP
ENSG00000260160LncEditing_360907PRADchr19_52063487_-4.631352e+003.546911e+002.598279e+003.917786e+008.936613e-051.123732e-04UP
ENSG00000260160LncEditing_360908PRADchr19_52063493_-4.783221e+003.409554e+002.047504e+006.335724e+002.362296e-104.362865e-10UP
ENSG00000260160LncEditing_360922PRADchr19_52063552_-4.283866e+003.135687e+002.221572e+008.070351e+007.009663e-161.982158e-15UP
ENSG00000260160LncEditing_360933PRADchr19_52063627_-4.599539e+003.524890e+002.604770e+004.769047e+001.850992e-062.580039e-06UP
ENSG00000260160LncEditing_360898BRCAchr19_52063423_-2.198206e+001.423038e+001.594001e+001.475573e+012.826018e-491.160743e-48UP
ENSG00000260160LncEditing_360906BRCAchr19_52063486_-2.577597e+001.558209e+001.377150e+001.462219e+012.027656e-487.882920e-48UP
ENSG00000260160LncEditing_360907BRCAchr19_52063487_-2.891869e+001.695125e+001.297673e+001.098352e+014.587199e-287.959174e-28UP
ENSG00000260160LncEditing_360922BRCAchr19_52063552_-2.585720e+001.609936e+001.462923e+001.252822e+015.232214e-361.199943e-35UP
ENSG00000260160LncEditing_360898PAADchr19_52063423_-2.327630e+001.545335e+001.692213e+004.680659e+002.859541e-065.397785e-06UP
ENSG00000260160LncEditing_360906PAADchr19_52063486_-2.629683e+001.711897e+001.614746e+004.358120e+001.311847e-052.226164e-05UP
ENSG00000260160LncEditing_360922PAADchr19_52063552_-2.669584e+001.699956e+001.535820e+003.947009e+007.913362e-051.171317e-04UP
ENSG00000260160LncEditing_360868ESCAchr19_52063014_-2.207907e+001.083844e+009.741638e-014.598778e+004.249756e-066.303955e-06UP
ENSG00000260160LncEditing_360907ESCAchr19_52063487_-2.212552e+001.034555e+009.118257e-014.580379e+004.641336e-066.826835e-06UP

check buttonCorrelation between RNA A-to-I editing events's frequecy and lncRNA expression.
LncRNA Ensembl IDLncRNA IndexCorrelationP-valueAdjc.p-value
ENSG00000260160LncEditing_3608079.080010e-013.303107e-024.405737e-02
ENSG00000260160LncEditing_360908-3.894727e-011.425545e-021.619598e-02
ENSG00000260160LncEditing_360906-3.806532e-011.179720e-021.368475e-02
ENSG00000260160LncEditing_360898-3.223757e-013.981961e-024.096997e-02
ENSG00000260160LncEditing_3607885.085768e-013.114393e-023.614636e-02
ENSG00000260160LncEditing_360907-3.927136e-013.310605e-038.828279e-03
ENSG00000260160LncEditing_360908-4.169428e-015.412078e-031.237046e-02
ENSG00000260160LncEditing_360907-5.905977e-017.758006e-034.077456e-02
ENSG00000260160LncEditing_360906-3.420779e-011.859715e-022.987740e-02
ENSG00000260160LncEditing_360922-4.218397e-011.160128e-022.229266e-02
ENSG00000260160LncEditing_360906-8.727552e-011.034639e-023.827093e-02
ENSG00000260160LncEditing_360907-4.219294e-014.491824e-024.645063e-02
ENSG00000260160LncEditing_360898-3.601285e-011.020170e-022.129051e-02
ENSG00000260160LncEditing_360922-3.694748e-014.854201e-024.872907e-02
ENSG00000260160LncEditing_3609223.960928e-011.035913e-021.640612e-02
ENSG00000260160LncEditing_360907-3.980973e-011.612003e-043.201616e-04
ENSG00000260160LncEditing_360908-3.628156e-015.815211e-051.433750e-04
ENSG00000260160LncEditing_360933-4.057297e-014.112129e-051.078856e-04
ENSG00000260160LncEditing_360907-4.675034e-013.528740e-037.306625e-03
ENSG00000260160LncEditing_360908-4.557376e-017.691443e-031.156744e-02

check buttonCis-expression quantitative trait loci(cis-eQTL) of lncRNA.
LncRNA Ensembl IDLncRNA NameSNP infoNumber of Positive corelated CancerPositive corelated CancerNumber of Negative corelated CancerNegative corelated Cancer

Top

lncRNAs regulate the target genes through functioning as enhancers

lncrna_enhancer
check buttonlncRNA regulates differentially expressed genes by function as enhancer.
LncRNA Ensembl IDPC Gene IDPC Gene NamePositive correlated cancersCancer with PC gene up-regulationCancer with PC gene down-regulation

Top

lncRNAs regulate the target genes through recruiting transcript factors

lncrna_TF
check buttonLncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).
lncRNA IDTF IDTF NamePCgene IDPCgene NameNumber of CancerCanaer Types

check buttonLncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).
lncRNA IDTF IDTF NamePCgene IDPCgene NameNumber of CancerCanaer Types

Top

lncRNAs regulate the alternative splicing event through interacting with splicing factor

lncrna_AS
check buttonLncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.
LncRNA Ensembl IDRBP IDRBP Gene NameExon Skipping IDSkipped ExonEX Gene NameEX Affected TransIDORF_annoCancer Type

check buttonLncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.
LncRNA Ensembl IDRBP IDRBP Gene NameExon Skipping IDSkipped ExonEX Gene NameEX Affected TransIDORF_annoCancer Type

Top

lncRNAs regulate mRNA through targeting the 3'-UTR region

lncrna_mRNA
check buttonlncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.
LncRNA Ensembl IDLncRNA ENST IDPC Gene NamePC Gene IDPC ENST IDdGnDGCancer with PC gene up-regulationCancer with PC gene Down-regulation
ENSG00000260160ENST00000569091ETFAENSG00000140374ENST00000560726-0.122589-CHOL
ENSG00000260160ENST00000569091ETFAENSG00000140374ENST00000559602-0.1308104-CHOL
ENSG00000260160ENST00000569091ETFAENSG00000140374ENST00000559973-0.2726245-CHOL
ENSG00000260160ENST00000569091ALDH9A1ENSG00000143149ENST00000354775-0.12821-CHOL,KICH
ENSG00000260160ENST00000569091CLPBENSG00000162129ENST00000535990-1.5400365-CHOL
ENSG00000260160ENST00000569091CLPBENSG00000162129ENST00000340729-1.5400365-CHOL
ENSG00000260160ENST00000569091CLPBENSG00000162129ENST00000543042-0.1196536-CHOL
ENSG00000260160ENST00000569091ETFDHENSG00000171503ENST00000307738-0.1448523-CHOL,LIHC
ENSG00000260160ENST00000569091GATMENSG00000171766ENST00000558336-0.1175564-CHOL,KIRC,KICH,LIHC
ENSG00000260160ENST00000569091PCENSG00000173599ENST00000524491-0.8862252-CHOL,KIRC,KICH
ENSG00000260160ENST00000569091BPNT1ENSG00000162813ENST00000544404-0.53951-KICH
ENSG00000260160ENST00000569091BPNT1ENSG00000162813ENST00000414869-0.53951-KICH
ENSG00000260160ENST00000569091BPNT1ENSG00000162813ENST00000322067-0.53951-KICH
ENSG00000260160ENST00000569091BPNT1ENSG00000162813ENST00000469520-0.53951-KICH
ENSG00000260160ENST00000569091PLS1ENSG00000120756ENST00000497002-0.1257239-KICH
ENSG00000260160ENST00000569091RAB29ENSG00000117280ENST00000414729-0.204179-KIRC,KICH
ENSG00000260160ENST00000569091SUMF2ENSG00000129103ENST00000413756-0.1791542-KICH
ENSG00000260160ENST00000569091TOM1L1ENSG00000141198ENST00000348161-0.10951-KICH
ENSG00000260160ENST00000569091TOM1L1ENSG00000141198ENST00000576932-0.15391-KICH
ENSG00000260160ENST00000569091TOM1L1ENSG00000141198ENST00000574318-0.2341232-KICH
ENSG00000260160ENST00000569091DAG1ENSG00000173402ENST00000435508-0.328375-KIRC
ENSG00000260160ENST00000569091PCCBENSG00000114054ENST00000484181-0.14981-CHOL,KIRC
ENSG00000260160ENST00000569091ACADMENSG00000117054ENST00000541113-0.10731-CHOL,KIRC,KICH,LIHC
ENSG00000260160ENST00000569091ACADMENSG00000117054ENST00000370841-0.10731-CHOL,KIRC,KICH,LIHC
ENSG00000260160ENST00000569091ACADMENSG00000117054ENST00000420607-0.1538415-CHOL,KIRC,KICH,LIHC
ENSG00000260160ENST00000569091CPT2ENSG00000157184ENST00000371486-0.47031-CHOL,LIHC
ENSG00000260160ENST00000569091MAIP1ENSG00000162972ENST00000435773-0.139088-CHOL
ENSG00000260160ENST00000569091ALAS1ENSG00000023330ENST00000394965-0.12541-CHOL,KIRC,LIHC
ENSG00000260160ENST00000569091ALAS1ENSG00000023330ENST00000310271-0.12541-CHOL,KIRC,LIHC
ENSG00000260160ENST00000569091ALAS1ENSG00000023330ENST00000484952-0.12541-CHOL,KIRC,LIHC
ENSG00000260160ENST00000569091ALAS1ENSG00000023330ENST00000493402-0.247657-CHOL,KIRC,LIHC
ENSG00000260160ENST00000569091FERMT2ENSG00000073712ENST00000399304-0.1268576-CHOL,LIHC
ENSG00000260160ENST00000569091ACAT1ENSG00000075239ENST00000265838-0.66901-CHOL,KIRC,LIHC
ENSG00000260160ENST00000569091ACAT1ENSG00000075239ENST00000528370-0.13331-CHOL,KIRC,LIHC
ENSG00000260160ENST00000569091L2HGDHENSG00000087299ENST00000261699-0.2019584-CHOL,KIRC
ENSG00000260160ENST00000569091L2HGDHENSG00000087299ENST00000555423-0.2250492-CHOL,KIRC
ENSG00000260160ENST00000569091SLC39A14ENSG00000104635ENST00000240095-0.22001-CHOL,LIHC
ENSG00000260160ENST00000569091MPDZENSG00000107186ENST00000546205-0.227462-CHOL,LIHC
ENSG00000260160ENST00000569091MPDZENSG00000107186ENST00000494251-0.16141-CHOL,LIHC
ENSG00000260160ENST00000569091ALDH5A1ENSG00000112294ENST00000491546-0.326491-CHOL,KIRC
ENSG00000260160ENST00000569091HMGCRENSG00000113161ENST00000509085-0.107243-CHOL,KIRC
ENSG00000260160ENST00000569091HMGCRENSG00000113161ENST00000511986-0.107244-CHOL,KIRC

Top

lncRNAs regulate mRNA by competing with miRNA

lncrna_miRNA
check buttonlncRNA regulates mRNA by competing the miRNA binding site with mRNA.
LncRNA Ensembl IDlncRNA-miRNA-mRNACancer Types
ENSG00000260160CTC-471J1.2,hsa-mir-139,AP5Z1KICH,CHOL,LGG,GBM,LIHC
ENSG00000260160CTC-471J1.2,hsa-mir-139,KEAP1KICH,CHOL,LGG,GBM,LIHC
ENSG00000260160CTC-471J1.2,hsa-mir-139,RALYKICH,CHOL,LGG,GBM,LIHC
ENSG00000260160CTC-471J1.2,hsa-mir-139,EMC8KICH,CHOL,LGG,GBM,LIHC
ENSG00000260160CTC-471J1.2,hsa-mir-139,POFUT2KICH,CHOL,LGG,GBM,LIHC
ENSG00000260160CTC-471J1.2,hsa-mir-139,NELFAKICH,CHOL,LGG,GBM,LIHC
ENSG00000260160CTC-471J1.2,hsa-mir-139,YIPF2KICH,CHOL,LGG,GBM,LIHC
ENSG00000260160CTC-471J1.2,hsa-mir-139,METTL17KICH,CHOL,LGG,GBM,LIHC
ENSG00000260160CTC-471J1.2,hsa-mir-139,RCC1LKICH,CHOL,LGG,GBM,LIHC
ENSG00000260160CTC-471J1.2,hsa-mir-139,POLD1KICH,CHOL,LGG,GBM,LIHC
ENSG00000260160CTC-471J1.2,hsa-mir-139,PAK4KICH,CHOL,LGG,GBM,LIHC
ENSG00000260160CTC-471J1.2,hsa-mir-139,RBM42KICH,CHOL,LGG,GBM,LIHC
ENSG00000260160CTC-471J1.2,hsa-mir-139,TRIM56KICH,CHOL,LGG,GBM,LIHC
ENSG00000260160CTC-471J1.2,hsa-mir-139,KCTD5KICH,CHOL,LGG,GBM,LIHC
ENSG00000260160CTC-471J1.2,hsa-mir-139,FBRSKICH,CHOL,LGG,GBM,LIHC
ENSG00000260160CTC-471J1.2,hsa-mir-139,MYO19KICH,CHOL,LGG,GBM,LIHC
ENSG00000260160CTC-471J1.2,hsa-mir-139,KMT5CKICH,CHOL,LGG,GBM,LIHC
ENSG00000260160CTC-471J1.2,hsa-mir-139,OFD1KICH,CHOL,LGG,GBM,LIHC
ENSG00000260160CTC-471J1.2,hsa-mir-139,ABCD1KICH,CHOL,LGG,GBM,LIHC
ENSG00000260160CTC-471J1.2,hsa-mir-139,RALAKICH,CHOL,LGG,GBM,LIHC
ENSG00000260160CTC-471J1.2,hsa-mir-378a,PLXNB1CHOL,GBM,UCS,PAAD,LIHC

Top

lncRNA coding potential

check buttonORFfinder result for the gencode.v22.lncRNA.transcript.fa.
lncRNA Ensembl IDlncRNA ENST IDlength(AA)start at transcriptend at transcript
ENSG00000260160.1ENST00000569091.186288548