lncRNA targets the enhancer region and positively regulates the gene expression. |
lncRNA targets the promoter region and positively regulates the gene expression. |
lncRNA targets the promoter region and negatively regulates the gene expression. |
lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
Only predicted by lncTar | PSMB5,ASB8,PARP1,NEK4,TUBA1B,TRAP1,VPS26C,PSMD2,ARID1A,VPS4B,MYH9,RNF123,PFKM,BECN1,TOM1L1,NARS1,FAM104A,DAG1,SNX6,GNL3L,RRM1,GBA,TRIM37,TPM3,FASTKD5,MPPE1,STAMBP,TUBA1C,IARS1,BPNT1,CPT2,VPS26A,GPN1,SLC25A5,CAP1,CLTC,ATRN,SDHC,L2HGDH,ATP2A2,ALG12,VGLL4,CTNNB1,NBR1,THTPA,SUMF2,BCL2L13,SNX19,ATP6V0D1,HSPA8,GART,ETFA,SNX29,ASCC1,ILK,CDK4,ERLIN2,COPS4,CCT5,RPRD1B,SLC7A6OS,NOMO2,COPA,PC,RAB29,IQGAP1,PCCB,INTS5,FERMT2,STAT3,CLPB,CIPC,API5,STRAP,ETFDH,ZFPL1,PRMT5,LYPLA1,MFSD11,ATP5PB,NOLC1,MPDZ,SLC25A3,PSME3,AP2B1,IKBKG,ALAS1,CCDC25,HADHB,CNIH1,ACACA,PRKAR2A,SEC14L1,RAB5C,PRPS1,SNRNP200,BRCC3,NIPA2,ZFAND3,HSPG2,CCT2,TP53BP2,SLC35A5,KBTBD4,ZC3H15,DLAT,MFSD1,HMGCR,CHTF8,MSH6,MAIP1,SF3A1,BTBD1,TMLHE,DDB1,ABHD5,AZI2,ST13,MIF4GD,SERINC3,OAT,SLC39A14,PIGS,WASHC5,PIGN,ALDH5A1,MRPL49,NSF,FASTKD2,SEC23B,PAIP2,OGDH,EIF3L,PLS1,HBP1,EIF4G2,HAUS4,UTP18,LARS2,CUL2,CS,CAB39,CAPN1,ACADM,ACTN4,CTNNA1,KCTD9,ABCE1,ATL1,CARM1,RTN4,HCCS,TEX2,DDX1,ALDH9A1,ITFG1,USP14,AMBRA1,RUSF1,AIMP2,ECD,UBC,ATF1,ACAT1,HAUS2,PSMD1,GLYR1,CRADD,TAF1A,MCFD2,VDAC2,NDUFS1,GATM | Exist in public source | NA |
lncRNA targets the skipped exon region. | -lncRNA and exonskipping events are positively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
-lncRNA and exonskipping events are negatively correlated. |
 |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | ENSG00000260160 | ENST00000569091 | exon_skip_319223 | chr19:43526200-43526349 | -14.56 | -0.1111 | ETHE1 | ENST00000292147 | Frame-shift | ENSG00000260160 | ENST00000569091 | exon_skip_66482 | chr11:126274926-126275021 | -10.31 | -0.1586 | FOXRED1 | ENST00000263578 | Frame-shift | ENSG00000260160 | ENST00000569091 | exon_skip_382458 | chr3:38131595-38131638 | -4.60 | -0.1643 | ACAA1 | ENST00000333167 | Frame-shift | ENSG00000260160 | ENST00000569091 | exon_skip_9446 | chr1:147270931-147271005 | -9.60 | -0.1477 | CHD1L | ENST00000369258 | Frame-shift | ENSG00000260160 | ENST00000569091 | exon_skip_74009 | chr11:64773429-64773505 | -8.29 | -0.1184 | SF1 | ENST00000377390 | Frame-shift | ENSG00000260160 | ENST00000569091 | exon_skip_81515 | chr12:42351884-42352049 | -8.34 | -0.1127 | PPHLN1 | ENST00000395568 | In-frame | ENSG00000260160 | ENST00000569091 | exon_skip_92074 | chr12:50142052-50142110 | -6.87 | -0.1493 | CERS5 | ENST00000317551 | Frame-shift | ENSG00000260160 | ENST00000569091 | exon_skip_108095 | chr14:73955450-73955509 | -7.13 | -1.0186 | COQ6 | ENST00000334571 | Frame-shift | ENSG00000260160 | ENST00000569091 | exon_skip_114365 | chr14:74290026-74290118 | -7.70 | -0.1069 | ABCD4 | ENST00000356924 | Frame-shift | ENSG00000260160 | ENST00000569091 | exon_skip_290158 | chr17:42953723-42953778 | -5.37 | -0.1492 | AARSD1 | ENST00000427569 | Frame-shift | ENSG00000260160 | ENST00000569091 | exon_skip_300663 | chr19:1425877-1425960 | -7.69 | -0.1131 | DAZAP1 | ENST00000233078 | Frame-shift | ENSG00000260160 | ENST00000569091 | exon_skip_302168 | chr19:10680345-10680443 | -9.81 | -0.1326 | ILF3 | ENST00000590261 | Frame-shift | ENSG00000260160 | ENST00000569091 | exon_skip_324294 | chr2:27774423-27774530 | -11.23 | -0.1422 | MRPL33 | ENST00000296102 | Frame-shift | ENSG00000260160 | ENST00000569091 | exon_skip_327433 | chr2:86125794-86125880 | -8.00 | -0.2222 | PTCD3 | ENST00000254630 | Frame-shift | ENSG00000260160 | ENST00000569091 | exon_skip_339830 | chr2:69423581-69423717 | -9.22 | -0.1036 | NFU1 | ENST00000410022 | Frame-shift | ENSG00000260160 | ENST00000569091 | exon_skip_361485 | chr21:29008239-29008307 | -6.56 | -0.1929 | RWDD2B | ENST00000493196 | Frame-shift | ENSG00000260160 | ENST00000569091 | exon_skip_370518 | chr22:50247691-50247776 | -11.37 | -0.1805 | HDAC10 | ENST00000216271 | Frame-shift | ENSG00000260160 | ENST00000569091 | exon_skip_370525 | chr22:50250426-50250523 | -16.58 | -0.1822 | HDAC10 | ENST00000216271 | Frame-shift | ENSG00000260160 | ENST00000569091 | exon_skip_378467 | chr3:143023974-143024018 | -9.38 | -0.3127 | U2SURP | ENST00000473835 | Frame-shift | ENSG00000260160 | ENST00000569091 | exon_skip_380242 | chr3:186784961-186785101 | -10.28 | -0.1448 | EIF4A2 | ENST00000323963 | Frame-shift | ENSG00000260160 | ENST00000569091 | exon_skip_387016 | chr3:121788283-121788432 | -10.71 | -0.1116 | IQCB1 | ENST00000310864 | Frame-shift | ENSG00000260160 | ENST00000569091 | exon_skip_430434 | chr4:82356536-82356683 | -11.40 | -0.1373 | HNRNPD | ENST00000313899 | In-frame | ENSG00000260160 | ENST00000569091 | exon_skip_444499 | chr5:138164086-138164133 | -5.35 | -0.2675 | BRD8 | ENST00000254900 | Frame-shift | ENSG00000260160 | ENST00000569091 | exon_skip_462160 | chr6:127316449-127316502 | -5.74 | -0.3189 | ECHDC1 | ENST00000531967 | Frame-shift | ENSG00000260160 | ENST00000569091 | exon_skip_470226 | chr7:103307595-103307708 | -8.44 | -0.1068 | PMPCB | ENST00000249269 | Frame-shift | ENSG00000260160 | ENST00000569091 | exon_skip_374581 | chr3:50110378-50110463 | -9.85 | -0.1263 | RBM5 | ENST00000347869 | Frame-shift |
lncRNA targets by miRNA. |
LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source | ENSG00000260160 | hsa-mir-139 | ENST00000569091 | chr19:52058732-52058795 | 150.00 | -64.92 | 65 | NA | ENSG00000260160 | hsa-mir-139 | ENST00000569091 | chr19:52058552-52058624 | 149.00 | -52.77 | 69 | NA | ENSG00000260160 | hsa-mir-378a | ENST00000569091 | chr19:52058579-52058643 | 161.00 | -50.67 | 65 | NA | ENSG00000260160 | hsa-mir-378a | ENST00000569091 | chr19:52058691-52058755 | 145.00 | -55.17 | 58 | NA | ENSG00000260160 | hsa-mir-378a | ENST00000569091 | chr19:52059063-52059124 | 144.00 | -60.37 | 57 | NA |
RNA A-to-I editing events in lncRNA. |
LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name | LncEditing_360783 | ENSG00000260160.1 | chr19 | 52059097 | - | sense_overlapping | CTC-471J1.2 | ENST00000569091.1 | sense_overlapping | CTC-471J1.2-001 | LncEditing_360784 | ENSG00000260160.1 | chr19 | 52059109 | - | sense_overlapping | CTC-471J1.2 | ENST00000569091.1 | sense_overlapping | CTC-471J1.2-001 | LncEditing_360788 | ENSG00000260160.1 | chr19 | 52059159 | - | sense_overlapping | CTC-471J1.2 | ENST00000569091.1 | sense_overlapping | CTC-471J1.2-001 | LncEditing_360807 | ENSG00000260160.1 | chr19 | 52059298 | - | sense_overlapping | CTC-471J1.2 | ENST00000569091.1 | sense_overlapping | CTC-471J1.2-001 | LncEditing_360816 | ENSG00000260160.1 | chr19 | 52059692 | - | sense_overlapping | CTC-471J1.2 | ENST00000569091.1 | sense_overlapping | CTC-471J1.2-001 | LncEditing_360868 | ENSG00000260160.1 | chr19 | 52063014 | - | sense_overlapping | CTC-471J1.2 | ENST00000569091.1 | sense_overlapping | CTC-471J1.2-001 | LncEditing_360898 | ENSG00000260160.1 | chr19 | 52063423 | - | sense_overlapping | CTC-471J1.2 | ENST00000569091.1 | sense_overlapping | CTC-471J1.2-001 | LncEditing_360906 | ENSG00000260160.1 | chr19 | 52063486 | - | sense_overlapping | CTC-471J1.2 | ENST00000569091.1 | sense_overlapping | CTC-471J1.2-001 | LncEditing_360907 | ENSG00000260160.1 | chr19 | 52063487 | - | sense_overlapping | CTC-471J1.2 | ENST00000569091.1 | sense_overlapping | CTC-471J1.2-001 | LncEditing_360908 | ENSG00000260160.1 | chr19 | 52063493 | - | sense_overlapping | CTC-471J1.2 | ENST00000569091.1 | sense_overlapping | CTC-471J1.2-001 | LncEditing_360922 | ENSG00000260160.1 | chr19 | 52063552 | - | sense_overlapping | CTC-471J1.2 | ENST00000569091.1 | sense_overlapping | CTC-471J1.2-001 | LncEditing_360933 | ENSG00000260160.1 | chr19 | 52063627 | - | sense_overlapping | CTC-471J1.2 | ENST00000569091.1 | sense_overlapping | CTC-471J1.2-001 |
Edited-associated DElncRNAs in cancer. |
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LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change | ENSG00000260160 | LncEditing_360898 | UCEC | chr19_52063423_- | 3.175953e+00 | 1.573460e+00 | 9.869239e-01 | 1.252074e+01 | 5.749321e-36 | 6.817052e-35 | UP | ENSG00000260160 | LncEditing_360906 | UCEC | chr19_52063486_- | 3.352034e+00 | 1.759133e+00 | 1.075070e+00 | 1.132697e+01 | 9.648749e-30 | 7.507933e-29 | UP | ENSG00000260160 | LncEditing_360907 | UCEC | chr19_52063487_- | 3.454534e+00 | 2.047515e+00 | 1.325176e+00 | 6.779308e+00 | 1.207526e-11 | 2.464542e-11 | UP | ENSG00000260160 | LncEditing_360922 | UCEC | chr19_52063552_- | 3.985791e+00 | 1.835127e+00 | 8.936659e-01 | 1.008242e+01 | 6.608119e-24 | 3.427962e-23 | UP | ENSG00000260160 | LncEditing_360898 | SARC | chr19_52063423_- | 2.863846e+00 | 1.792735e+00 | 1.479746e+00 | 6.960197e+00 | 3.397966e-12 | 7.623208e-12 | UP | ENSG00000260160 | LncEditing_360906 | SARC | chr19_52063486_- | 3.391936e+00 | 2.052162e+00 | 1.379379e+00 | 7.219720e+00 | 5.209455e-13 | 1.330524e-12 | UP | ENSG00000260160 | LncEditing_360922 | SARC | chr19_52063552_- | 3.469981e+00 | 2.035695e+00 | 1.299704e+00 | 6.772935e+00 | 1.261954e-11 | 2.587006e-11 | UP | ENSG00000260160 | LncEditing_360788 | UCS | chr19_52059159_- | 4.513832e+00 | 2.468127e+00 | 1.148190e+00 | 2.198085e+00 | 2.794303e-02 | 3.072914e-02 | UP | ENSG00000260160 | LncEditing_360898 | UCS | chr19_52063423_- | 3.319189e+00 | 1.536762e+00 | 9.001411e-01 | 4.781102e+00 | 1.743372e-06 | 2.334873e-05 | UP | ENSG00000260160 | LncEditing_360906 | UCS | chr19_52063486_- | 4.140968e+00 | 1.885547e+00 | 8.810690e-01 | 4.681045e+00 | 2.854165e-06 | 3.304376e-05 | UP | ENSG00000260160 | LncEditing_360922 | UCS | chr19_52063552_- | 3.861429e+00 | 1.924389e+00 | 9.952883e-01 | 4.391844e+00 | 1.123934e-05 | 9.366119e-05 | UP | ENSG00000260160 | LncEditing_360933 | UCS | chr19_52063627_- | 4.725723e+00 | 2.253449e+00 | 9.359791e-01 | 3.826019e+00 | 1.302322e-04 | 5.251298e-04 | UP | ENSG00000260160 | LncEditing_360898 | KIRC | chr19_52063423_- | 2.153344e+00 | 1.293449e+00 | 1.359885e+00 | 9.802329e+00 | 1.100196e-22 | 3.073104e-22 | UP | ENSG00000260160 | LncEditing_360906 | KIRC | chr19_52063486_- | 2.485815e+00 | 1.414254e+00 | 1.228988e+00 | 9.153043e+00 | 5.535197e-20 | 1.301472e-19 | UP | ENSG00000260160 | LncEditing_360922 | KIRC | chr19_52063552_- | 2.667819e+00 | 1.453825e+00 | 1.141803e+00 | 7.583838e+00 | 3.354799e-14 | 6.124362e-14 | UP | ENSG00000260160 | LncEditing_360898 | DLBC | chr19_52063423_- | 2.147577e+00 | 9.162506e-01 | 8.137388e-01 | 4.149713e+00 | 3.328931e-05 | 3.022670e-04 | UP | ENSG00000260160 | LncEditing_360906 | DLBC | chr19_52063486_- | 2.400576e+00 | 1.173379e+00 | 9.683250e-01 | 2.585205e+00 | 9.732125e-03 | 1.463041e-02 | UP | ENSG00000260160 | LncEditing_360922 | DLBC | chr19_52063552_- | 2.594110e+00 | 1.239458e+00 | 9.384995e-01 | 2.611165e+00 | 9.023439e-03 | 1.384000e-02 | UP | ENSG00000260160 | LncEditing_360783 | GBM | chr19_52059097_- | 2.703048e+00 | 1.399139e+00 | 1.052578e+00 | 5.289794e+00 | 1.224540e-07 | 2.797474e-07 | UP | ENSG00000260160 | LncEditing_360784 | GBM | chr19_52059109_- | 2.513742e+00 | 1.360612e+00 | 1.129203e+00 | 6.078350e+00 | 1.214258e-09 | 4.180147e-09 | UP | ENSG00000260160 | LncEditing_360898 | GBM | chr19_52063423_- | 2.067248e+00 | 1.328074e+00 | 1.566475e+00 | 6.079941e+00 | 1.202270e-09 | 4.156568e-09 | UP | ENSG00000260160 | LncEditing_360906 | GBM | chr19_52063486_- | 1.950306e+00 | 1.305150e+00 | 1.725672e+00 | 5.728322e+00 | 1.014290e-08 | 2.781560e-08 | UP | ENSG00000260160 | LncEditing_360907 | GBM | chr19_52063487_- | 2.212086e+00 | 1.452635e+00 | 1.648166e+00 | 3.394127e+00 | 6.884772e-04 | 8.716402e-04 | UP | ENSG00000260160 | LncEditing_360908 | GBM | chr19_52063493_- | 2.288391e+00 | 1.437296e+00 | 1.490364e+00 | 4.355932e+00 | 1.325021e-05 | 2.161173e-05 | UP | ENSG00000260160 | LncEditing_360922 | GBM | chr19_52063552_- | 2.199599e+00 | 1.406639e+00 | 1.550416e+00 | 4.448292e+00 | 8.655564e-06 | 1.449762e-05 | UP | ENSG00000260160 | LncEditing_360898 | MESO | chr19_52063423_- | 2.824887e+00 | 1.660245e+00 | 1.304126e+00 | 4.902107e+00 | 9.481425e-07 | 7.020769e-06 | UP | ENSG00000260160 | LncEditing_360906 | MESO | chr19_52063486_- | 3.169427e+00 | 1.956586e+00 | 1.437022e+00 | 4.145442e+00 | 3.391592e-05 | 9.502569e-05 | UP | ENSG00000260160 | LncEditing_360907 | MESO | chr19_52063487_- | 3.635276e+00 | 2.126889e+00 | 1.293126e+00 | 3.701527e+00 | 2.143055e-04 | 4.384804e-04 | UP | ENSG00000260160 | LncEditing_360922 | MESO | chr19_52063552_- | 3.043709e+00 | 1.977992e+00 | 1.608251e+00 | 4.297879e+00 | 1.724401e-05 | 5.603646e-05 | UP | ENSG00000260160 | LncEditing_360898 | BLCA | chr19_52063423_- | 3.145079e+00 | 1.390758e+00 | 8.494553e-01 | 1.105236e+01 | 2.135272e-28 | 2.903969e-27 | UP | ENSG00000260160 | LncEditing_360906 | BLCA | chr19_52063486_- | 3.796020e+00 | 1.778459e+00 | 9.141939e-01 | 1.024104e+01 | 1.298303e-24 | 1.217718e-23 | UP | ENSG00000260160 | LncEditing_360907 | BLCA | chr19_52063487_- | 3.869124e+00 | 2.193423e+00 | 1.221266e+00 | 7.029791e+00 | 2.068431e-12 | 4.106665e-12 | UP | ENSG00000260160 | LncEditing_360908 | BLCA | chr19_52063493_- | 3.674443e+00 | 2.238579e+00 | 1.398715e+00 | 6.051494e+00 | 1.435089e-09 | 2.230538e-09 | UP | ENSG00000260160 | LncEditing_360922 | BLCA | chr19_52063552_- | 3.774652e+00 | 1.855806e+00 | 9.762783e-01 | 9.848075e+00 | 6.986941e-23 | 4.751120e-22 | UP | ENSG00000260160 | LncEditing_360933 | BLCA | chr19_52063627_- | 4.072390e+00 | 2.219548e+00 | 1.142061e+00 | 6.874937e+00 | 6.201722e-12 | 1.187936e-11 | UP | ENSG00000260160 | LncEditing_360898 | LGG | chr19_52063423_- | 1.991962e+00 | 1.160273e+00 | 1.282502e+00 | 1.060091e+01 | 2.951071e-26 | 1.278194e-25 | UP | ENSG00000260160 | LncEditing_360906 | LGG | chr19_52063486_- | 2.461485e+00 | 1.318542e+00 | 1.110390e+00 | 8.351731e+00 | 6.726959e-17 | 1.609910e-16 | UP | ENSG00000260160 | LncEditing_360922 | LGG | chr19_52063552_- | 2.475955e+00 | 1.314334e+00 | 1.094507e+00 | 8.365588e+00 | 5.981570e-17 | 1.451199e-16 | UP | ENSG00000260160 | LncEditing_360784 | ACC | chr19_52059109_- | 5.819832e+00 | 2.592874e+00 | 8.573202e-01 | 3.835160e+00 | 1.254827e-04 | 3.454147e-04 | UP | ENSG00000260160 | LncEditing_360898 | ACC | chr19_52063423_- | 3.691039e+00 | 2.087372e+00 | 1.216043e+00 | 4.101457e+00 | 4.105564e-05 | 1.501464e-04 | UP | ENSG00000260160 | LncEditing_360906 | ACC | chr19_52063486_- | 4.658237e+00 | 2.442947e+00 | 1.073927e+00 | 3.662382e+00 | 2.498804e-04 | 5.978447e-04 | UP | ENSG00000260160 | LncEditing_360908 | ACC | chr19_52063493_- | 4.494632e+00 | 2.691397e+00 | 1.351630e+00 | 3.007816e+00 | 2.631325e-03 | 3.889765e-03 | UP | ENSG00000260160 | LncEditing_360922 | ACC | chr19_52063552_- | 4.487865e+00 | 2.521379e+00 | 1.202188e+00 | 3.464445e+00 | 5.313263e-04 | 1.054415e-03 | UP | ENSG00000260160 | LncEditing_360898 | COAD | chr19_52063423_- | 2.475831e+00 | 1.126086e+00 | 8.798204e-01 | 8.526747e+00 | 1.505202e-17 | 3.958124e-17 | UP | ENSG00000260160 | LncEditing_360898 | LUSC | chr19_52063423_- | 1.750935e+00 | 8.976192e-01 | 1.037398e+00 | 1.130760e+01 | 1.203371e-29 | 8.097681e-29 | UP | ENSG00000260160 | LncEditing_360906 | LUSC | chr19_52063486_- | 1.896770e+00 | 1.045788e+00 | 1.164206e+00 | 7.077507e+00 | 1.467710e-12 | 2.174634e-12 | UP | ENSG00000260160 | LncEditing_360922 | LUSC | chr19_52063552_- | 2.014441e+00 | 1.031740e+00 | 1.035948e+00 | 7.626582e+00 | 2.410600e-14 | 3.932443e-14 | UP | ENSG00000260160 | LncEditing_360898 | KICH | chr19_52063423_- | 1.749143e+00 | 9.446707e-01 | 1.125157e+00 | 4.213886e+00 | 2.510138e-05 | 1.028101e-04 | UP | ENSG00000260160 | LncEditing_360906 | KICH | chr19_52063486_- | 2.335467e+00 | 1.163663e+00 | 9.949884e-01 | 4.888388e+00 | 1.016651e-06 | 8.672654e-06 | UP | ENSG00000260160 | LncEditing_360922 | KICH | chr19_52063552_- | 2.097233e+00 | 1.275014e+00 | 1.392808e+00 | 2.792593e+00 | 5.228748e-03 | 7.918902e-03 | UP | ENSG00000260160 | LncEditing_360898 | SKCM | chr19_52063423_- | 2.044861e+00 | 9.872516e-01 | 9.519159e-01 | 1.137692e+01 | 5.449303e-30 | 3.343891e-29 | UP | ENSG00000260160 | LncEditing_360922 | SKCM | chr19_52063552_- | 2.480197e+00 | 1.152969e+00 | 9.048946e-01 | 8.758818e+00 | 1.973085e-18 | 3.474345e-18 | UP | ENSG00000260160 | LncEditing_360783 | PCPG | chr19_52059097_- | 3.706389e+00 | 2.649213e+00 | 2.064193e+00 | 3.734752e+00 | 1.879000e-04 | 2.585141e-04 | UP | ENSG00000260160 | LncEditing_360788 | PCPG | chr19_52059159_- | 4.473411e+00 | 2.565538e+00 | 1.246706e+00 | 4.409538e+00 | 1.035913e-05 | 1.830740e-05 | UP | ENSG00000260160 | LncEditing_360816 | PCPG | chr19_52059692_- | 3.361640e+00 | 2.678542e+00 | 3.051408e+00 | 2.571821e+00 | 1.011652e-02 | 1.117415e-02 | UP | ENSG00000260160 | LncEditing_360898 | PCPG | chr19_52063423_- | 3.212568e+00 | 1.856683e+00 | 1.264224e+00 | 7.453672e+00 | 9.077783e-14 | 1.102951e-12 | UP | ENSG00000260160 | LncEditing_360906 | PCPG | chr19_52063486_- | 3.541205e+00 | 2.448739e+00 | 1.878988e+00 | 4.628291e+00 | 3.686963e-06 | 7.082466e-06 | UP | ENSG00000260160 | LncEditing_360908 | PCPG | chr19_52063493_- | 3.888009e+00 | 2.590068e+00 | 1.706363e+00 | 3.557251e+00 | 3.747560e-04 | 4.989902e-04 | UP | ENSG00000260160 | LncEditing_360922 | PCPG | chr19_52063552_- | 3.457083e+00 | 2.327161e+00 | 1.751361e+00 | 6.015105e+00 | 1.797706e-09 | 7.871039e-09 | UP | ENSG00000260160 | LncEditing_360898 | KIRP | chr19_52063423_- | 2.331482e+00 | 1.084866e+00 | 9.060185e-01 | 8.131289e+00 | 4.247507e-16 | 2.050678e-15 | UP | ENSG00000260160 | LncEditing_360906 | KIRP | chr19_52063486_- | 2.711879e+00 | 1.223859e+00 | 8.711899e-01 | 6.319171e+00 | 2.629700e-10 | 5.816430e-10 | UP | ENSG00000260160 | LncEditing_360898 | THCA | chr19_52063423_- | 1.978039e+00 | 1.456145e+00 | 2.262870e+00 | 7.283752e+00 | 3.246623e-13 | 7.266252e-13 | UP | ENSG00000260160 | LncEditing_360906 | THCA | chr19_52063486_- | 2.384446e+00 | 1.541017e+00 | 1.587877e+00 | 7.999957e+00 | 1.244622e-15 | 3.335368e-15 | UP | ENSG00000260160 | LncEditing_360922 | THCA | chr19_52063552_- | 2.456665e+00 | 1.556243e+00 | 1.518295e+00 | 7.742427e+00 | 9.753707e-15 | 2.391855e-14 | UP | ENSG00000260160 | LncEditing_360898 | CHOL | chr19_52063423_- | 3.029265e+00 | 1.637414e+00 | 1.126699e+00 | 3.215408e+00 | 1.302590e-03 | 4.590948e-03 | UP | ENSG00000260160 | LncEditing_360906 | CHOL | chr19_52063486_- | 3.599073e+00 | 1.665069e+00 | 8.992454e-01 | 3.794772e+00 | 1.477792e-04 | 1.567159e-03 | UP | ENSG00000260160 | LncEditing_360922 | CHOL | chr19_52063552_- | 3.155493e+00 | 1.910061e+00 | 1.380745e+00 | 2.436981e+00 | 1.481045e-02 | 2.056327e-02 | UP | ENSG00000260160 | LncEditing_360933 | CHOL | chr19_52063627_- | 4.022239e+00 | 1.971140e+00 | 9.718466e-01 | 3.041904e+00 | 2.350866e-03 | 6.336023e-03 | UP | ENSG00000260160 | LncEditing_360784 | THYM | chr19_52059109_- | 4.331013e+00 | 2.710303e+00 | 1.478743e+00 | 4.024956e+00 | 5.698593e-05 | 1.050557e-04 | UP | ENSG00000260160 | LncEditing_360898 | THYM | chr19_52063423_- | 3.413115e+00 | 2.088230e+00 | 1.410818e+00 | 5.920923e+00 | 3.201403e-09 | 1.994437e-08 | UP | ENSG00000260160 | LncEditing_360906 | THYM | chr19_52063486_- | 3.645663e+00 | 2.414859e+00 | 1.682815e+00 | 5.968802e+00 | 2.390021e-09 | 1.523990e-08 | UP | ENSG00000260160 | LncEditing_360907 | THYM | chr19_52063487_- | 3.937003e+00 | 2.740038e+00 | 1.912405e+00 | 3.879277e+00 | 1.047676e-04 | 1.820001e-04 | UP | ENSG00000260160 | LncEditing_360908 | THYM | chr19_52063493_- | 3.891442e+00 | 2.747116e+00 | 1.990497e+00 | 3.848118e+00 | 1.190289e-04 | 2.037484e-04 | UP | ENSG00000260160 | LncEditing_360922 | THYM | chr19_52063552_- | 3.716372e+00 | 2.561226e+00 | 1.861989e+00 | 4.403249e+00 | 1.066414e-05 | 2.275577e-05 | UP | ENSG00000260160 | LncEditing_360933 | THYM | chr19_52063627_- | 4.554545e+00 | 2.680499e+00 | 1.307522e+00 | 4.462093e+00 | 8.116306e-06 | 1.788227e-05 | UP | ENSG00000260160 | LncEditing_360788 | OV | chr19_52059159_- | 1.886591e+00 | 1.070450e+00 | 1.223145e+00 | 6.708929e+00 | 1.960576e-11 | 3.819384e-11 | UP | ENSG00000260160 | LncEditing_360898 | OV | chr19_52063423_- | 1.723463e+00 | 9.949142e-01 | 1.261565e+00 | 8.068699e+00 | 7.105105e-16 | 2.124600e-15 | UP | ENSG00000260160 | LncEditing_360906 | OV | chr19_52063486_- | 1.763242e+00 | 1.006708e+00 | 1.236729e+00 | 7.824099e+00 | 5.113059e-15 | 1.424684e-14 | UP | ENSG00000260160 | LncEditing_360907 | OV | chr19_52063487_- | 1.798120e+00 | 1.078792e+00 | 1.356718e+00 | 5.409510e+00 | 6.319743e-08 | 8.953781e-08 | UP | ENSG00000260160 | LncEditing_360908 | OV | chr19_52063493_- | 1.932801e+00 | 1.067541e+00 | 1.167677e+00 | 6.320883e+00 | 2.600725e-10 | 4.554985e-10 | UP | ENSG00000260160 | LncEditing_360922 | OV | chr19_52063552_- | 1.805899e+00 | 1.011873e+00 | 1.196617e+00 | 7.559691e+00 | 4.040293e-14 | 1.029100e-13 | UP | ENSG00000260160 | LncEditing_360933 | OV | chr19_52063627_- | 1.864051e+00 | 1.031230e+00 | 1.170857e+00 | 7.346244e+00 | 2.038536e-13 | 4.868659e-13 | UP | ENSG00000260160 | LncEditing_360788 | TGCT | chr19_52059159_- | 5.982807e+00 | 2.806328e+00 | 9.156344e-01 | 4.409934e+00 | 1.034019e-05 | 1.583947e-05 | UP | ENSG00000260160 | LncEditing_360816 | TGCT | chr19_52059692_- | 3.436167e+00 | 3.131884e+00 | 7.475542e+00 | 2.733774e+00 | 6.261297e-03 | 6.865604e-03 | UP | ENSG00000260160 | LncEditing_360898 | TGCT | chr19_52063423_- | 3.642399e+00 | 1.977616e+00 | 1.134911e+00 | 5.580528e+00 | 2.397894e-08 | 5.359228e-08 | UP | ENSG00000260160 | LncEditing_360906 | TGCT | chr19_52063486_- | 4.085618e+00 | 2.051438e+00 | 1.006118e+00 | 6.741611e+00 | 1.566401e-11 | 6.743769e-11 | UP | ENSG00000260160 | LncEditing_360907 | TGCT | chr19_52063487_- | 4.818608e+00 | 2.301559e+00 | 9.380818e-01 | 7.331096e+00 | 2.282775e-13 | 1.530582e-12 | UP | ENSG00000260160 | LncEditing_360908 | TGCT | chr19_52063493_- | 5.193185e+00 | 2.404043e+00 | 8.999627e-01 | 6.256576e+00 | 3.935217e-10 | 1.297987e-09 | UP | ENSG00000260160 | LncEditing_360922 | TGCT | chr19_52063552_- | 4.344725e+00 | 2.193980e+00 | 1.014493e+00 | 6.813300e+00 | 9.538475e-12 | 4.287073e-11 | UP | ENSG00000260160 | LncEditing_360933 | TGCT | chr19_52063627_- | 4.941980e+00 | 2.386563e+00 | 9.522403e-01 | 5.982404e+00 | 2.198678e-09 | 5.916180e-09 | UP | ENSG00000260160 | LncEditing_360898 | READ | chr19_52063423_- | 1.908253e+00 | 8.224103e-01 | 8.235046e-01 | 6.644253e+00 | 3.047587e-11 | 2.184104e-10 | UP | ENSG00000260160 | LncEditing_360898 | LUAD | chr19_52063423_- | 2.490232e+00 | 1.614789e+00 | 1.600168e+00 | 9.190565e+00 | 3.907845e-20 | 1.175067e-19 | UP | ENSG00000260160 | LncEditing_360906 | LUAD | chr19_52063486_- | 2.548198e+00 | 1.835664e+00 | 2.113382e+00 | 6.567961e+00 | 5.100888e-11 | 7.695764e-11 | UP | ENSG00000260160 | LncEditing_360922 | LUAD | chr19_52063552_- | 2.895519e+00 | 1.774557e+00 | 1.415703e+00 | 8.685718e+00 | 3.763566e-18 | 9.104044e-18 | UP | ENSG00000260160 | LncEditing_360898 | STAD | chr19_52063423_- | 1.968263e+00 | 9.630689e-01 | 9.697326e-01 | 8.877572e+00 | 6.833584e-19 | 2.637653e-18 | UP | ENSG00000260160 | LncEditing_360906 | STAD | chr19_52063486_- | 1.961461e+00 | 1.017162e+00 | 1.055543e+00 | 7.529162e+00 | 5.106711e-14 | 1.133769e-13 | UP | ENSG00000260160 | LncEditing_360908 | STAD | chr19_52063493_- | 2.206662e+00 | 1.073014e+00 | 9.613561e-01 | 6.581098e+00 | 4.669866e-11 | 7.989543e-11 | UP | ENSG00000260160 | LncEditing_360922 | STAD | chr19_52063552_- | 2.180558e+00 | 1.035135e+00 | 9.303384e-01 | 8.123134e+00 | 4.542969e-16 | 1.227459e-15 | UP | ENSG00000260160 | LncEditing_360898 | CESC | chr19_52063423_- | 2.439538e+00 | 1.070162e+00 | 8.411995e-01 | 1.088424e+01 | 1.370431e-27 | 3.225783e-26 | UP | ENSG00000260160 | LncEditing_360906 | CESC | chr19_52063486_- | 2.854510e+00 | 1.340366e+00 | 9.169126e-01 | 9.648940e+00 | 4.966646e-22 | 5.628866e-21 | UP | ENSG00000260160 | LncEditing_360907 | CESC | chr19_52063487_- | 3.024920e+00 | 1.620881e+00 | 1.110964e+00 | 5.886728e+00 | 3.939155e-09 | 7.430657e-09 | UP | ENSG00000260160 | LncEditing_360908 | CESC | chr19_52063493_- | 3.058006e+00 | 1.637454e+00 | 1.109709e+00 | 5.895848e+00 | 3.727613e-09 | 7.084780e-09 | UP | ENSG00000260160 | LncEditing_360922 | CESC | chr19_52063552_- | 2.964460e+00 | 1.360952e+00 | 8.903509e-01 | 9.158236e+00 | 5.275275e-20 | 4.483983e-19 | UP | ENSG00000260160 | LncEditing_360933 | CESC | chr19_52063627_- | 3.303099e+00 | 1.614014e+00 | 9.678976e-01 | 6.199080e+00 | 5.679429e-10 | 1.206879e-09 | UP | ENSG00000260160 | LncEditing_360783 | PRAD | chr19_52059097_- | 4.628539e+00 | 3.534273e+00 | 2.569749e+00 | 5.099937e+00 | 3.397661e-07 | 4.885687e-07 | UP | ENSG00000260160 | LncEditing_360784 | PRAD | chr19_52059109_- | 4.973535e+00 | 3.334097e+00 | 1.733176e+00 | 8.830928e+00 | 1.038104e-18 | 3.630291e-18 | UP | ENSG00000260160 | LncEditing_360788 | PRAD | chr19_52059159_- | 5.197648e+00 | 3.364214e+00 | 1.593398e+00 | 8.983389e+00 | 2.625512e-19 | 9.519493e-19 | UP | ENSG00000260160 | LncEditing_360898 | PRAD | chr19_52063423_- | 3.900256e+00 | 2.698238e+00 | 1.881286e+00 | 5.991456e+00 | 2.079705e-09 | 3.636408e-09 | UP | ENSG00000260160 | LncEditing_360906 | PRAD | chr19_52063486_- | 4.253385e+00 | 3.059105e+00 | 2.103041e+00 | 8.264750e+00 | 1.399876e-16 | 4.136634e-16 | UP | ENSG00000260160 | LncEditing_360907 | PRAD | chr19_52063487_- | 4.631352e+00 | 3.546911e+00 | 2.598279e+00 | 3.917786e+00 | 8.936613e-05 | 1.123732e-04 | UP | ENSG00000260160 | LncEditing_360908 | PRAD | chr19_52063493_- | 4.783221e+00 | 3.409554e+00 | 2.047504e+00 | 6.335724e+00 | 2.362296e-10 | 4.362865e-10 | UP | ENSG00000260160 | LncEditing_360922 | PRAD | chr19_52063552_- | 4.283866e+00 | 3.135687e+00 | 2.221572e+00 | 8.070351e+00 | 7.009663e-16 | 1.982158e-15 | UP | ENSG00000260160 | LncEditing_360933 | PRAD | chr19_52063627_- | 4.599539e+00 | 3.524890e+00 | 2.604770e+00 | 4.769047e+00 | 1.850992e-06 | 2.580039e-06 | UP | ENSG00000260160 | LncEditing_360898 | BRCA | chr19_52063423_- | 2.198206e+00 | 1.423038e+00 | 1.594001e+00 | 1.475573e+01 | 2.826018e-49 | 1.160743e-48 | UP | ENSG00000260160 | LncEditing_360906 | BRCA | chr19_52063486_- | 2.577597e+00 | 1.558209e+00 | 1.377150e+00 | 1.462219e+01 | 2.027656e-48 | 7.882920e-48 | UP | ENSG00000260160 | LncEditing_360907 | BRCA | chr19_52063487_- | 2.891869e+00 | 1.695125e+00 | 1.297673e+00 | 1.098352e+01 | 4.587199e-28 | 7.959174e-28 | UP | ENSG00000260160 | LncEditing_360922 | BRCA | chr19_52063552_- | 2.585720e+00 | 1.609936e+00 | 1.462923e+00 | 1.252822e+01 | 5.232214e-36 | 1.199943e-35 | UP | ENSG00000260160 | LncEditing_360898 | PAAD | chr19_52063423_- | 2.327630e+00 | 1.545335e+00 | 1.692213e+00 | 4.680659e+00 | 2.859541e-06 | 5.397785e-06 | UP | ENSG00000260160 | LncEditing_360906 | PAAD | chr19_52063486_- | 2.629683e+00 | 1.711897e+00 | 1.614746e+00 | 4.358120e+00 | 1.311847e-05 | 2.226164e-05 | UP | ENSG00000260160 | LncEditing_360922 | PAAD | chr19_52063552_- | 2.669584e+00 | 1.699956e+00 | 1.535820e+00 | 3.947009e+00 | 7.913362e-05 | 1.171317e-04 | UP | ENSG00000260160 | LncEditing_360868 | ESCA | chr19_52063014_- | 2.207907e+00 | 1.083844e+00 | 9.741638e-01 | 4.598778e+00 | 4.249756e-06 | 6.303955e-06 | UP | ENSG00000260160 | LncEditing_360907 | ESCA | chr19_52063487_- | 2.212552e+00 | 1.034555e+00 | 9.118257e-01 | 4.580379e+00 | 4.641336e-06 | 6.826835e-06 | UP |
Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value | ENSG00000260160 | LncEditing_360807 | 9.080010e-01 | 3.303107e-02 | 4.405737e-02 | ENSG00000260160 | LncEditing_360908 | -3.894727e-01 | 1.425545e-02 | 1.619598e-02 | ENSG00000260160 | LncEditing_360906 | -3.806532e-01 | 1.179720e-02 | 1.368475e-02 | ENSG00000260160 | LncEditing_360898 | -3.223757e-01 | 3.981961e-02 | 4.096997e-02 | ENSG00000260160 | LncEditing_360788 | 5.085768e-01 | 3.114393e-02 | 3.614636e-02 | ENSG00000260160 | LncEditing_360907 | -3.927136e-01 | 3.310605e-03 | 8.828279e-03 | ENSG00000260160 | LncEditing_360908 | -4.169428e-01 | 5.412078e-03 | 1.237046e-02 | ENSG00000260160 | LncEditing_360907 | -5.905977e-01 | 7.758006e-03 | 4.077456e-02 | ENSG00000260160 | LncEditing_360906 | -3.420779e-01 | 1.859715e-02 | 2.987740e-02 | ENSG00000260160 | LncEditing_360922 | -4.218397e-01 | 1.160128e-02 | 2.229266e-02 | ENSG00000260160 | LncEditing_360906 | -8.727552e-01 | 1.034639e-02 | 3.827093e-02 | ENSG00000260160 | LncEditing_360907 | -4.219294e-01 | 4.491824e-02 | 4.645063e-02 | ENSG00000260160 | LncEditing_360898 | -3.601285e-01 | 1.020170e-02 | 2.129051e-02 | ENSG00000260160 | LncEditing_360922 | -3.694748e-01 | 4.854201e-02 | 4.872907e-02 | ENSG00000260160 | LncEditing_360922 | 3.960928e-01 | 1.035913e-02 | 1.640612e-02 | ENSG00000260160 | LncEditing_360907 | -3.980973e-01 | 1.612003e-04 | 3.201616e-04 | ENSG00000260160 | LncEditing_360908 | -3.628156e-01 | 5.815211e-05 | 1.433750e-04 | ENSG00000260160 | LncEditing_360933 | -4.057297e-01 | 4.112129e-05 | 1.078856e-04 | ENSG00000260160 | LncEditing_360907 | -4.675034e-01 | 3.528740e-03 | 7.306625e-03 | ENSG00000260160 | LncEditing_360908 | -4.557376e-01 | 7.691443e-03 | 1.156744e-02 |
Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
lncRNA regulates differentially expressed genes by function as enhancer. |
LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation | ENSG00000260160 | ENST00000569091 | ETFA | ENSG00000140374 | ENST00000560726 | -0.1225 | 89 | - | CHOL | ENSG00000260160 | ENST00000569091 | ETFA | ENSG00000140374 | ENST00000559602 | -0.1308 | 104 | - | CHOL | ENSG00000260160 | ENST00000569091 | ETFA | ENSG00000140374 | ENST00000559973 | -0.2726 | 245 | - | CHOL | ENSG00000260160 | ENST00000569091 | ALDH9A1 | ENSG00000143149 | ENST00000354775 | -0.1282 | 1 | - | CHOL,KICH | ENSG00000260160 | ENST00000569091 | CLPB | ENSG00000162129 | ENST00000535990 | -1.5400 | 365 | - | CHOL | ENSG00000260160 | ENST00000569091 | CLPB | ENSG00000162129 | ENST00000340729 | -1.5400 | 365 | - | CHOL | ENSG00000260160 | ENST00000569091 | CLPB | ENSG00000162129 | ENST00000543042 | -0.1196 | 536 | - | CHOL | ENSG00000260160 | ENST00000569091 | ETFDH | ENSG00000171503 | ENST00000307738 | -0.1448 | 523 | - | CHOL,LIHC | ENSG00000260160 | ENST00000569091 | GATM | ENSG00000171766 | ENST00000558336 | -0.1175 | 564 | - | CHOL,KIRC,KICH,LIHC | ENSG00000260160 | ENST00000569091 | PC | ENSG00000173599 | ENST00000524491 | -0.8862 | 252 | - | CHOL,KIRC,KICH | ENSG00000260160 | ENST00000569091 | BPNT1 | ENSG00000162813 | ENST00000544404 | -0.5395 | 1 | - | KICH | ENSG00000260160 | ENST00000569091 | BPNT1 | ENSG00000162813 | ENST00000414869 | -0.5395 | 1 | - | KICH | ENSG00000260160 | ENST00000569091 | BPNT1 | ENSG00000162813 | ENST00000322067 | -0.5395 | 1 | - | KICH | ENSG00000260160 | ENST00000569091 | BPNT1 | ENSG00000162813 | ENST00000469520 | -0.5395 | 1 | - | KICH | ENSG00000260160 | ENST00000569091 | PLS1 | ENSG00000120756 | ENST00000497002 | -0.1257 | 239 | - | KICH | ENSG00000260160 | ENST00000569091 | RAB29 | ENSG00000117280 | ENST00000414729 | -0.2041 | 79 | - | KIRC,KICH | ENSG00000260160 | ENST00000569091 | SUMF2 | ENSG00000129103 | ENST00000413756 | -0.1791 | 542 | - | KICH | ENSG00000260160 | ENST00000569091 | TOM1L1 | ENSG00000141198 | ENST00000348161 | -0.1095 | 1 | - | KICH | ENSG00000260160 | ENST00000569091 | TOM1L1 | ENSG00000141198 | ENST00000576932 | -0.1539 | 1 | - | KICH | ENSG00000260160 | ENST00000569091 | TOM1L1 | ENSG00000141198 | ENST00000574318 | -0.2341 | 232 | - | KICH | ENSG00000260160 | ENST00000569091 | DAG1 | ENSG00000173402 | ENST00000435508 | -0.3283 | 75 | - | KIRC | ENSG00000260160 | ENST00000569091 | PCCB | ENSG00000114054 | ENST00000484181 | -0.1498 | 1 | - | CHOL,KIRC | ENSG00000260160 | ENST00000569091 | ACADM | ENSG00000117054 | ENST00000541113 | -0.1073 | 1 | - | CHOL,KIRC,KICH,LIHC | ENSG00000260160 | ENST00000569091 | ACADM | ENSG00000117054 | ENST00000370841 | -0.1073 | 1 | - | CHOL,KIRC,KICH,LIHC | ENSG00000260160 | ENST00000569091 | ACADM | ENSG00000117054 | ENST00000420607 | -0.1538 | 415 | - | CHOL,KIRC,KICH,LIHC | ENSG00000260160 | ENST00000569091 | CPT2 | ENSG00000157184 | ENST00000371486 | -0.4703 | 1 | - | CHOL,LIHC | ENSG00000260160 | ENST00000569091 | MAIP1 | ENSG00000162972 | ENST00000435773 | -0.1390 | 88 | - | CHOL | ENSG00000260160 | ENST00000569091 | ALAS1 | ENSG00000023330 | ENST00000394965 | -0.1254 | 1 | - | CHOL,KIRC,LIHC | ENSG00000260160 | ENST00000569091 | ALAS1 | ENSG00000023330 | ENST00000310271 | -0.1254 | 1 | - | CHOL,KIRC,LIHC | ENSG00000260160 | ENST00000569091 | ALAS1 | ENSG00000023330 | ENST00000484952 | -0.1254 | 1 | - | CHOL,KIRC,LIHC | ENSG00000260160 | ENST00000569091 | ALAS1 | ENSG00000023330 | ENST00000493402 | -0.2476 | 57 | - | CHOL,KIRC,LIHC | ENSG00000260160 | ENST00000569091 | FERMT2 | ENSG00000073712 | ENST00000399304 | -0.1268 | 576 | - | CHOL,LIHC | ENSG00000260160 | ENST00000569091 | ACAT1 | ENSG00000075239 | ENST00000265838 | -0.6690 | 1 | - | CHOL,KIRC,LIHC | ENSG00000260160 | ENST00000569091 | ACAT1 | ENSG00000075239 | ENST00000528370 | -0.1333 | 1 | - | CHOL,KIRC,LIHC | ENSG00000260160 | ENST00000569091 | L2HGDH | ENSG00000087299 | ENST00000261699 | -0.2019 | 584 | - | CHOL,KIRC | ENSG00000260160 | ENST00000569091 | L2HGDH | ENSG00000087299 | ENST00000555423 | -0.2250 | 492 | - | CHOL,KIRC | ENSG00000260160 | ENST00000569091 | SLC39A14 | ENSG00000104635 | ENST00000240095 | -0.2200 | 1 | - | CHOL,LIHC | ENSG00000260160 | ENST00000569091 | MPDZ | ENSG00000107186 | ENST00000546205 | -0.2274 | 62 | - | CHOL,LIHC | ENSG00000260160 | ENST00000569091 | MPDZ | ENSG00000107186 | ENST00000494251 | -0.1614 | 1 | - | CHOL,LIHC | ENSG00000260160 | ENST00000569091 | ALDH5A1 | ENSG00000112294 | ENST00000491546 | -0.3264 | 91 | - | CHOL,KIRC | ENSG00000260160 | ENST00000569091 | HMGCR | ENSG00000113161 | ENST00000509085 | -0.1072 | 43 | - | CHOL,KIRC | ENSG00000260160 | ENST00000569091 | HMGCR | ENSG00000113161 | ENST00000511986 | -0.1072 | 44 | - | CHOL,KIRC |
lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types | ENSG00000260160 | CTC-471J1.2,hsa-mir-139,AP5Z1 | KICH,CHOL,LGG,GBM,LIHC | ENSG00000260160 | CTC-471J1.2,hsa-mir-139,KEAP1 | KICH,CHOL,LGG,GBM,LIHC | ENSG00000260160 | CTC-471J1.2,hsa-mir-139,RALY | KICH,CHOL,LGG,GBM,LIHC | ENSG00000260160 | CTC-471J1.2,hsa-mir-139,EMC8 | KICH,CHOL,LGG,GBM,LIHC | ENSG00000260160 | CTC-471J1.2,hsa-mir-139,POFUT2 | KICH,CHOL,LGG,GBM,LIHC | ENSG00000260160 | CTC-471J1.2,hsa-mir-139,NELFA | KICH,CHOL,LGG,GBM,LIHC | ENSG00000260160 | CTC-471J1.2,hsa-mir-139,YIPF2 | KICH,CHOL,LGG,GBM,LIHC | ENSG00000260160 | CTC-471J1.2,hsa-mir-139,METTL17 | KICH,CHOL,LGG,GBM,LIHC | ENSG00000260160 | CTC-471J1.2,hsa-mir-139,RCC1L | KICH,CHOL,LGG,GBM,LIHC | ENSG00000260160 | CTC-471J1.2,hsa-mir-139,POLD1 | KICH,CHOL,LGG,GBM,LIHC | ENSG00000260160 | CTC-471J1.2,hsa-mir-139,PAK4 | KICH,CHOL,LGG,GBM,LIHC | ENSG00000260160 | CTC-471J1.2,hsa-mir-139,RBM42 | KICH,CHOL,LGG,GBM,LIHC | ENSG00000260160 | CTC-471J1.2,hsa-mir-139,TRIM56 | KICH,CHOL,LGG,GBM,LIHC | ENSG00000260160 | CTC-471J1.2,hsa-mir-139,KCTD5 | KICH,CHOL,LGG,GBM,LIHC | ENSG00000260160 | CTC-471J1.2,hsa-mir-139,FBRS | KICH,CHOL,LGG,GBM,LIHC | ENSG00000260160 | CTC-471J1.2,hsa-mir-139,MYO19 | KICH,CHOL,LGG,GBM,LIHC | ENSG00000260160 | CTC-471J1.2,hsa-mir-139,KMT5C | KICH,CHOL,LGG,GBM,LIHC | ENSG00000260160 | CTC-471J1.2,hsa-mir-139,OFD1 | KICH,CHOL,LGG,GBM,LIHC | ENSG00000260160 | CTC-471J1.2,hsa-mir-139,ABCD1 | KICH,CHOL,LGG,GBM,LIHC | ENSG00000260160 | CTC-471J1.2,hsa-mir-139,RALA | KICH,CHOL,LGG,GBM,LIHC | ENSG00000260160 | CTC-471J1.2,hsa-mir-378a,PLXNB1 | CHOL,GBM,UCS,PAAD,LIHC |
ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | ENSG00000260160.1 | ENST00000569091.1 | 86 | 288 | 548 |
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