lncRNA targets the enhancer region and positively regulates the gene expression. |
lncRNA targets the promoter region and positively regulates the gene expression. |
lncRNA targets the promoter region and negatively regulates the gene expression. |
lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
Only predicted by lncTar | RNH1 | Exist in public source | NA |
lncRNA targets the skipped exon region. | -lncRNA and exonskipping events are positively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | ENSG00000259865 | ENST00000566446 | exon_skip_1234 | chr1:11658532-11658628 | -17.62 | -0.2049 | FBXO44 | ENST00000251547,ENST00000376770 | In-frame | ENSG00000259865 | ENST00000566446 | exon_skip_470077 | chr7:102397619-102397698 | -8.80 | -0.1760 | PRKRIP1 | ENST00000397912,ENST00000496391 | Frame-shift | ENSG00000259865 | ENST00000566446 | exon_skip_44998 | chr10:110132304-110132400 | -8.58 | -0.1059 | ADD3 | ENST00000356080 | In-frame |
-lncRNA and exonskipping events are negatively correlated. |
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LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | ENSG00000259865 | ENST00000566446 | exon_skip_52671 | chr10:97461495-97461622 | -12.78 | -0.1006 | MMS19 | ENST00000370782,ENST00000438925 | Frame-shift | ENSG00000259865 | ENST00000566446 | exon_skip_438188 | chr5:141638954-141639021 | -7.79 | -0.1298 | RELL2 | ENST00000297164,ENST00000444782 | Frame-shift | ENSG00000259865 | ENST00000566446 | exon_skip_5818 | chr1:45568484-45568684 | -14.01 | -0.1069 | AKR1A1 | ENST00000351829,ENST00000372070 | Frame-shift | ENSG00000259865 | ENST00000566446 | exon_skip_41813 | chr10:68337857-68337996 | -12.42 | -0.1044 | HNRNPH3 | ENST00000265866 | Frame-shift | ENSG00000259865 | ENST00000566446 | exon_skip_95407 | chr12:95040475-95040597 | -11.23 | -0.1291 | NR2C1 | ENST00000333003 | Frame-shift | ENSG00000259865 | ENST00000566446 | exon_skip_110968 | chr14:20381552-20381686 | -12.11 | -0.1236 | TEP1 | ENST00000262715 | Frame-shift | ENSG00000259865 | ENST00000566446 | exon_skip_133217 | chr16:8635038-8635079 | -5.61 | -0.2805 | METTL22 | ENST00000381920 | Frame-shift | ENSG00000259865 | ENST00000566446 | exon_skip_309204 | chr19:49181348-49181461 | -13.25 | -0.1352 | TRPM4 | ENST00000252826 | Frame-shift | ENSG00000259865 | ENST00000566446 | exon_skip_353131 | chr20:58669290-58669453 | -15.82 | -0.1521 | STX16 | ENST00000371141 | Frame-shift | ENSG00000259865 | ENST00000566446 | exon_skip_370518 | chr22:50247691-50247776 | -8.16 | -0.1484 | HDAC10 | ENST00000216271 | Frame-shift | ENSG00000259865 | ENST00000566446 | exon_skip_374551 | chr3:50100531-50100605 | -8.01 | -0.1635 | RBM5 | ENST00000347869 | Frame-shift | ENSG00000259865 | ENST00000566446 | exon_skip_374552 | chr3:50104247-50104308 | -6.28 | -0.1256 | RBM5 | ENST00000347869 | Frame-shift | ENSG00000259865 | ENST00000566446 | exon_skip_380242 | chr3:186784961-186785101 | -11.60 | -0.1785 | EIF4A2 | ENST00000323963 | Frame-shift | ENSG00000259865 | ENST00000566446 | exon_skip_382458 | chr3:38131595-38131638 | -6.59 | -0.3295 | ACAA1 | ENST00000333167 | Frame-shift | ENSG00000259865 | ENST00000566446 | exon_skip_436035 | chr5:79656957-79657001 | -9.87 | -0.2531 | TENT2 | ENST00000296783,ENST00000428308,ENST00000453514 | Frame-shift | ENSG00000259865 | ENST00000566446 | exon_skip_446758 | chr5:178212972-178213103 | -11.32 | -0.1797 | PHYKPL | ENST00000308158 | Frame-shift | ENSG00000259865 | ENST00000566446 | exon_skip_2106 | chr1:17648553-17648675 | -10.94 | -0.1042 | ARHGEF10L | ENST00000361221 | Frame-shift | ENSG00000259865 | ENST00000566446 | exon_skip_9446 | chr1:147270931-147271005 | -6.85 | -0.1489 | CHD1L | ENST00000369258 | Frame-shift | ENSG00000259865 | ENST00000566446 | exon_skip_23423 | chr1:26294204-26294331 | -8.78 | -0.1688 | UBXN11 | ENST00000374221,ENST00000374222 | Frame-shift | ENSG00000259865 | ENST00000566446 | exon_skip_41841 | chr10:68756272-68756483 | -17.87 | -0.1324 | CCAR1 | ENST00000265872 | Frame-shift | ENSG00000259865 | ENST00000566446 | exon_skip_53559 | chr10:101793912-101793998 | -11.03 | -0.1902 | OGA | ENST00000361464 | Frame-shift | ENSG00000259865 | ENST00000566446 | exon_skip_66482 | chr11:126274926-126275021 | -9.83 | -0.1068 | FOXRED1 | ENST00000263578 | Frame-shift | ENSG00000259865 | ENST00000566446 | exon_skip_74009 | chr11:64773429-64773505 | -12.28 | -0.2456 | SF1 | ENST00000377390 | Frame-shift | ENSG00000259865 | ENST00000566446 | exon_skip_87733 | chr12:120571190-120571291 | -7.57 | -0.1066 | RNF10 | ENST00000325954 | Frame-shift | ENSG00000259865 | ENST00000566446 | exon_skip_92074 | chr12:50142052-50142110 | -6.22 | -0.1244 | CERS5 | ENST00000317551 | Frame-shift | ENSG00000259865 | ENST00000566446 | exon_skip_111863 | chr14:23565815-23565892 | -9.10 | -0.1857 | AP1G2 | ENST00000308724,ENST00000397120 | Frame-shift | ENSG00000259865 | ENST00000566446 | exon_skip_114365 | chr14:74290026-74290118 | -10.64 | -0.1237 | ABCD4 | ENST00000356924 | Frame-shift | ENSG00000259865 | ENST00000566446 | exon_skip_289852 | chr17:42103607-42103798 | -20.07 | -0.1287 | DHX58 | ENST00000251642 | Frame-shift | ENSG00000259865 | ENST00000566446 | exon_skip_290158 | chr17:42953723-42953778 | -7.86 | -0.1709 | AARSD1 | ENST00000427569 | Frame-shift | ENSG00000259865 | ENST00000566446 | exon_skip_292904 | chr17:69251746-69251866 | -10.41 | -0.1335 | ABCA5 | ENST00000392676,ENST00000588877 | In-frame | ENSG00000259865 | ENST00000566446 | exon_skip_325393 | chr2:47021861-47021979 | -11.86 | -0.1119 | TTC7A | ENST00000319190 | Frame-shift | ENSG00000259865 | ENST00000566446 | exon_skip_327748 | chr2:95410863-95411026 | -13.49 | -0.1336 | FAHD2A | ENST00000233379,ENST00000447036 | Frame-shift | ENSG00000259865 | ENST00000566446 | exon_skip_364260 | chr22:29291561-29291599 | -9.20 | -0.8364 | EWSR1 | ENST00000397938 | Frame-shift | ENSG00000259865 | ENST00000566446 | exon_skip_365497 | chr22:38067703-38067770 | -8.85 | -0.1883 | PICK1 | ENST00000356976,ENST00000404072 | Frame-shift | ENSG00000259865 | ENST00000566446 | exon_skip_371367 | chr3:9697710-9697866 | -12.92 | -0.2153 | MTMR14 | ENST00000296003 | In-frame | ENSG00000259865 | ENST00000566446 | exon_skip_374497 | chr3:49999439-49999513 | -7.27 | -0.1398 | RBM6 | ENST00000266022 | Frame-shift | ENSG00000259865 | ENST00000566446 | exon_skip_377198 | chr3:123130479-123130616 | -9.30 | -0.1388 | PDIA5 | ENST00000316218 | Frame-shift | ENSG00000259865 | ENST00000566446 | exon_skip_440477 | chr5:181233412-181233435 | -5.86 | -0.4508 | TRIM41 | ENST00000315073 | Frame-shift | ENSG00000259865 | ENST00000566446 | exon_skip_442657 | chr5:74730259-74730398 | -12.29 | -0.1078 | GFM2 | ENST00000296805,ENST00000509430 | Frame-shift | ENSG00000259865 | ENST00000566446 | exon_skip_444499 | chr5:138164086-138164133 | -4.77 | -0.2271 | BRD8 | ENST00000254900 | Frame-shift | ENSG00000259865 | ENST00000566446 | exon_skip_470226 | chr7:103307595-103307708 | -11.31 | -0.1285 | PMPCB | ENST00000249269 | Frame-shift | ENSG00000259865 | ENST00000566446 | exon_skip_11029 | chr1:154989559-154989707 | -15.29 | -0.1470 | FLAD1 | ENST00000292180 | Frame-shift | ENSG00000259865 | ENST00000566446 | exon_skip_59071 | chr11:47234756-47234934 | -13.43 | -0.1041 | DDB2 | ENST00000256996 | Frame-shift | ENSG00000259865 | ENST00000566446 | exon_skip_43507 | chr10:84499874-84499959 | -8.12 | -0.1624 | CCSER2 | ENST00000224756 | Frame-shift | ENSG00000259865 | ENST00000566446 | exon_skip_52891 | chr10:98429790-98429889 | -13.87 | -0.2522 | HPS1 | ENST00000325103,ENST00000361490 | In-frame | ENSG00000259865 | ENST00000566446 | exon_skip_48296 | chr10:26755654-26755741 | -9.29 | -0.1548 | ABI1 | ENST00000376142 | In-frame |
lncRNA targets by miRNA. |
LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
RNA A-to-I editing events in lncRNA. |
LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
Edited-associated DElncRNAs in cancer. |
LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
lncRNA regulates differentially expressed genes by function as enhancer. |
LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type | ENSG00000259865 | ENSG00000004534 | RBM6 | exon_skip_470077 | ENSG00000128563:chr7:102397619-102397698 | PRKRIP1 | ENST00000397912,ENST00000496391 | Frame-shift | SKCM,READ,THYM,PCPG,THCA |
LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
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LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type | ENSG00000259865 | ENSG00000004534 | RBM6 | exon_skip_41813 | ENSG00000096746:chr10:68337857-68337996 | HNRNPH3 | ENST00000265866 | Frame-shift | STAD,UVM,SKCM,THYM,PCPG,PAAD,THCA | ENSG00000259865 | ENSG00000004534 | RBM6 | exon_skip_95407 | ENSG00000120798:chr12:95040475-95040597 | NR2C1 | ENST00000333003 | Frame-shift | UVM,SKCM,THYM,PCPG,PAAD | ENSG00000259865 | ENSG00000004534 | RBM6 | exon_skip_370518 | ENSG00000100429:chr22:50247691-50247776 | HDAC10 | ENST00000216271 | Frame-shift | STAD,UVM,SKCM,READ,THYM,PAAD,THCA | ENSG00000259865 | ENSG00000004534 | RBM6 | exon_skip_382458 | ENSG00000060971:chr3:38131595-38131638 | ACAA1 | ENST00000333167 | Frame-shift | STAD,UVM,SKCM,READ,MESO,THYM,PCPG,PAAD,THCA | ENSG00000259865 | ENSG00000004534 | RBM6 | exon_skip_53559 | ENSG00000198408:chr10:101793912-101793998 | OGA | ENST00000361464 | Frame-shift | UVM,SKCM,THYM,PCPG,PAAD,THCA | ENSG00000259865 | ENSG00000004534 | RBM6 | exon_skip_290158 | ENSG00000266967:chr17:42953723-42953778 | AARSD1 | ENST00000427569 | Frame-shift | SKCM,READ,PRAD,PAAD,TGCT | ENSG00000259865 | ENSG00000004534 | RBM6 | exon_skip_377198 | ENSG00000065485:chr3:123130479-123130616 | PDIA5 | ENST00000316218 | Frame-shift | UVM,SKCM,READ,PCPG,PAAD,TGCT | ENSG00000259865 | ENSG00000004534 | RBM6 | exon_skip_442657 | ENSG00000164347:chr5:74730259-74730398 | GFM2 | ENST00000296805,ENST00000509430 | Frame-shift | UVM,SKCM,THYM,PCPG,PAAD,THCA | ENSG00000259865 | ENSG00000004534 | RBM6 | exon_skip_470226 | ENSG00000105819:chr7:103307595-103307708 | PMPCB | ENST00000249269 | Frame-shift | UVM,SKCM,LIHC,THYM,PCPG,PAAD,TGCT,THCA |
lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | ENSG00000259865.1 | ENST00000566446.1 | 420 | 1342 | 80 |
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