 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | THOC7,CSTF3,LSM5,SLIRP,CWC15,THYN1,LSM3,MYPOP | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | QKI,NFIC,ELK3,ZEB1 | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
 |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | | ENSG00000259153 | ENST00000557691 | exon_skip_48713 | chr10:34336198-34336243 | -5.54 | -0.1539 | PARD3 | ENST00000374789 | In-frame | | ENSG00000259153 | ENST00000557691 | exon_skip_114200 | chr14:73279280-73279424 | -18.66 | -0.1333 | NUMB | ENST00000355058,ENST00000555238 | In-frame | | ENSG00000259153 | ENST00000557691 | exon_skip_434332 | chr5:34813573-34813660 | -9.08 | -0.1211 | RAI14 | ENST00000265109,ENST00000428746,ENST00000503673 | In-frame | | ENSG00000259153 | ENST00000554032 | exon_skip_435063 | chr5:66075023-66075230 | -10.80 | -0.1009 | ERBIN | ENST00000284037 | In-frame | | ENSG00000259153 | ENST00000557691 | exon_skip_456460 | chr6:17771113-17771218 | -11.36 | -0.1092 | KIF13A | ENST00000259711 | In-frame | | ENSG00000259153 | ENST00000557691 | exon_skip_482403 | chr8:27445793-27445919 | -11.80 | -0.1124 | PTK2B | ENST00000346049,ENST00000397501 | In-frame | | ENSG00000259153 | ENST00000557691 | exon_skip_325891 | chr2:62987930-62988038 | -7.71 | -0.1307 | EHBP1 | ENST00000263991 | In-frame | | ENSG00000259153 | ENST00000557691 | exon_skip_423795 | chr4:55888887-55888932 | -9.38 | -0.2288 | EXOC1 | ENST00000346134,ENST00000381295 | In-frame |
| -lncRNA and exonskipping events are negatively correlated. |
 |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000259153 | ENST00000557691 | exon_skip_21628 | chr1:9756480-9756510 | -5.19 | -0.2359 | CLSTN1 | ENST00000377298 | In-frame | | ENSG00000259153 | ENST00000557691 | exon_skip_33516 | chr1:156938417-156938513 | -13.09 | -0.1393 | ARHGEF11 | ENST00000361409 | In-frame | | ENSG00000259153 | ENST00000557691 | exon_skip_43507 | chr10:84499874-84499959 | -9.56 | -0.1471 | CCSER2 | ENST00000224756 | Frame-shift | | ENSG00000259153 | ENST00000557691 | exon_skip_368285 | chr22:29329711-29329720 | -3.16 | -1.5800 | AP1B1 | ENST00000357586,ENST00000405198 | In-frame | | ENSG00000259153 | ENST00000557691 | exon_skip_436488 | chr5:96726793-96726859 | -7.64 | -0.1273 | CAST | ENST00000341926,ENST00000395813 | In-frame | | ENSG00000259153 | ENST00000557691 | exon_skip_451515 | chr6:41080810-41080897 | -10.99 | -0.1485 | NFYA | ENST00000341376 | In-frame | | ENSG00000259153 | ENST00000557691 | exon_skip_1717 | chr1:15721328-15721388 | -7.44 | -0.1860 | PLEKHM2 | ENST00000375799 | In-frame | | ENSG00000259153 | ENST00000554032 | exon_skip_80777 | chr12:26960514-26960628 | -8.86 | -0.1528 | FGFR1OP2 | ENST00000229395 | In-frame | | ENSG00000259153 | ENST00000557691 | exon_skip_287874 | chr17:29085603-29085648 | -6.31 | -0.2035 | MYO18A | ENST00000527372 | In-frame |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000259153.1 | ENST00000554032.1 | 73 | 308 | 529 | | ENSG00000259153.1 | ENST00000557691.1 | 67 | 202 | 2 |
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