 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | MAD2L2,TINF2,NDUFS3,NUDT18,DAPK3,C1orf56,SHARPIN,CACFD1,TMUB1,PPP2R3B,TIMM17B,MRPS12,NDUFB9,SNRPA,DTYMK,TRAPPC2L,DEGS2,COMMD7,COA4,NSDHL,NDUFB2,VKORC1,HSPE1,MRPS11,MON1A,C19orf48,RBM42,IDH2,FUOM,COPZ2,RPL35,MIIP,COQ6,NAGPA,SGTA,NDUFB1,RABL6,MPG,PDRG1,STAP2,ELOF1,HEXD,KRTCAP3,ABHD8,MRPL52,PRADC1,PES1,NMRAL1,COX6B1,DDX56,NDUFS8,SWI5,MALSU1,YIF1A,RPL23,FAHD2B,GUK1,ARFGAP1,UCHL3,RPL13A,LSM3,NUBP2,PTGES2,STYXL1,JTB,AP5Z1,PCED1A,MPND,REXO4,NXT1,PSME1,TRPT1,ROGDI,DHRSX,HYAL3,HMBS,SCAND1,COX14,HAGH,PPCDC,BOK,NDUFS6,PYM1,AP2S1,NFKBIB,GFER,TIMM9,MIEN1,PTP4A3,TP53I13,BEX5,PMF1-BGLAP,SNU13,CREB3,SNRPD3,UQCRC1,RPL36AL,CYBC1,COPE,HMOX2,MRPL11,SLC2A8,BAD,TMEM258,ABHD11,HDAC10,NOXA1,MRPL17,UCK1,LAMTOR1,SAC3D1,HSD3B7,MZT2A,MAGIX,IFI27L1,BRAT1,GPAA1,PSMG3,UQCR10,MYG1,RNF215,TLE5,MAPK11,ABHD14A,KLHL22,ATP5PF,TOMM7,NOP53,NDUFB10,DDRGK1,PRDX5,C15orf61,TXN2,HDDC3,SERGEF,RCC1L,NDUFAB1,HRAS,SRM,RPL27,COMMD5,CINP,HEXA,CFAP410,UBL5,RPS8,RPS11,LIPT2,ARMC6,PRAF2,TEDC1,ERP29,STOML1,KLC1,PTMS,MOB2,COMMD6,EMC9,MACROD1,DUSP28,BOLA1,PLEKHO1,RHBDD3,SIL1,HOMER3,SPSB2,TFPT,OXA1L,ZNRD2,SLIRP,BLVRB,PET100,SART1,HINT2,B3GAT3,PIGP,NDUFA11,CUTA,SMUG1,SURF2,EIF3G,CDK2AP2,RENBP,MICOS13,UQCR11,USE1,TMEM208,PSENEN,GPR137,MRPS34,CTU2,TSSC4,DDX49,PFDN6,YJU2,ALKBH2,TMEM160,PARL,ESS2,SDHAF2,TUFM,ALG1L,PMVK,ALKBH3,COX7A2,PCYT2,ISCA2,MMAB,MRPL55,EMG1,SNRNP25,C19orf53,MRPL28,SURF1,FIS1,CTDNEP1,GTPBP6,METTL1,TMEM251,CCDC106,TUBB4B,TOLLIP,PSMB5,MED27,GSDMD,MAF1,ELP5,CHMP2A,PPP1R3F,PRMT7,POLR2L,EBP,VPS4A,KRTCAP2,POP5,ZDHHC24,MYL5,UBXN6,METTL26,DECR1,PTCD1,USF2,COPRS,TRIOBP,SRA1,ASCC2,CPTP,BLOC1S1,TUBA4A,RPS27,CCDC107,MRPL34,ARF5,NDUFV1,TFEB,NAT14,PIP4P1,C14orf119,NPRL2,CCDC85B,HDAC11,SLC66A1,BCAT2,B4GALT7,WDR45,STX10,UBALD1,TMCO4,ST7,ENDOV,BLCAP,FAM207A,ELP6,KIAA0930,CHADL,CCDC90B,TAF10,DBNL,COX4I1,NFKBIL1,ECSIT,HOMEZ,PPM1M,PELP1,C19orf25,IPO4,TRMT61A,SERTAD1,ATP5F1D,DHRS4,SMIM19,FKBP2,SDSL,BOLA3,MRPS26,TMEM161A,SMIM1,SLC25A11,RPS26,ZNHIT2,BANF1,GSTZ1,TIMM10,BUD31,POLR2J,PTPMT1,ERCC2,LSM4,ATP5MJ,ARSA,ATP6V1F,DCXR,C8orf82,STX5,DGLUCY,MRPS33,PDAP1,CHCHD10,NDUFC1,NLRX1,OAZ1,AHSA1,SMIM4,CTSD,MDP1,MRPL54,ABCD1,TCEA2,ISG20,KRT10,ATP5MG,WDR83OS,SIRT3,CTU1,ACD,PIR,TMEM179B,XAB2,TMEM203,FAAP20,LAMTOR2,NDUFA3,PAF1,TAZ,GLRX5,RAB4B,TARBP2,DHPS,WASHC3,BABAM1,PIH1D1,MFSD3,NDUFA2,BORCS6,TIMM8A,FDX2,MCAT,GCAT,ZNF593,CENPM,CCS,COX6C,ACOT8,COA6,EEFSEC,ANAPC11,RRP7A,CCDC12,ILVBL,CYB561D2,DNAJC4,CCDC28B,BOP1,AK1,MRPL20,COX16,METTL27,BCAP31,BRI3,MRPL24,MRM1,UBL7,PSMC3,FAM71E1,NME4,POLD4,TBL3,CWC15,MED6,CPSF4,NAA10,EOLA1,TUSC2,PGP,LMF1,MRPS15,THOC6,UBOX5,TOMM22,IFI27L2,SGF29,MBD3,SERF2,RPS10,VPS28,BCL7B,MRPL36,DAD1,RABEP2,ALKBH4,PYURF,NDUFA6,HSPBP1,ISOC2,NOP10,NCAPH2,ATPAF2,CCDC134,TMEM187,NOSIP,ACADS,IDH3G,NUDT1,TRMU,WDR25,SEM1,TIGD5,C1orf35,LSM10,ZCWPW1,VPS9D1,ZER1,LSM5,H2AJ,SEC61B,COPS9,ZMAT5,FIBP,RPL39L,TMEM86B,FAM50A,MAP2K2,ITPA,SH3BGR,ALKBH7,HAUS7,DEAF1,ANKS3,SMDT1,TXNRD2,DHRS3,MCRIP2,FAM234A,ERCC1,PHLDA3,PPAN,UBE2M,S100A2,NDUFAF8,TMEM115,NDUFA13,SNRPD2,ERH,NAGLU,HSD17B8,NDUFA4,BCL7C,PEDS1,IFT27,SWSAP1,RAB13,CLN3,UBE2D4,ATP6V0E2,SIRT2,NUDT14,C20orf27,FAM174B,UBXN1,PEX16,COA8,VEGFB,MOSPD3,ATOX1,CST3,NDUFA8,CNFN,NEDD8,TSR3,RNASEH2C,NSMCE1,PIN1,REX1BD,FASTK,LRRC45,FAM174C,FKBP8,CENPX,DPM2,DPP7,MRPL46,HIRIP3,CCNQ,PELI3,TPRN,SLC66A2,SPRN,GINS2,UQCC2,AGPAT2,UROD,CBY1,WDR83,TOMM40,B3GALT6,ATP5MK,NOC4L,TMEM101,ADCK2,CLPP,MTLN,FBXW4,BORCS8,NUPR1,SLC25A39,PNKP,RPA3,SPATC1L,MRPS25,EIF3K,CLTB,DDT,SDF2L1,TRIR,JMJD4,SCNM1,RTRAF,GLI4,B4GALT2,NDUFB8,TECR,PNPLA4,ATP6V0B,MIX23,RPL37A,GNPTG,C11orf68,COMMD9,P2RY11,DUS2,NECAB3,MAN1B1,TCTA,DOHH,RMND5B,EPN1,FOXN3,SYCE1L,BRMS1,PQBP1,LENG1,TMEM186,PEX11G,TRADD,TM7SF2,NUDT22,CD2BP2,TMEM134,PPP1R14B,RP9,JOSD2,CASTOR1,MVD,FAM3A,PSME2,ATP5F1E,CDPF1,UBE2J2,TIMM13,UQCRB,CAPG,RAC3,COQ4,ECI1,TMEM223,COMTD1,SLC25A10,CHMP1A,GEMIN7,PIGQ,CHID1,TMEM60,SNTA1,MESP1,B3GALT4,NR2C2AP,ARFRP1,CIAO2B,AAMDC,MRPL27,RILP,ARPC4,TPGS1,MICOS10,RPS13,APRT,DUS1L,RUVBL2,TBC1D22A,RPS17,TPRA1,RPS29,DNAJC30,IRF3,NPC2,IMP3,C7orf50,C1orf122,GADD45GIP1,SLC25A1,KCNH2,EMC3,PPP1R16A,SS18L2,RFXANK,FAM89B,DNAJB2,PSMA7,COX17,RABAC1,TXNDC17,PLEKHJ1,TXNL4A,NDUFB7,NSUN5,CLN6,THYN1,PGLS,CKB,ETFB,LRRC29,AUP1,RPL36A,PYCR3,ZNF18,TMA7,YBEY,POMZP3,POLR2E,RNPEPL1,RPS19BP1,HSD17B14,THAP8,TMEM11,TMEM238,NDUFV3,DGCR6L,CYHR1,SIRT6 | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | SPICE1,IDH3A,METTL14,ZFP28,MYO9A,ARID1A,MARCHF6,SENP7,TBC1D5,MAP4K3,RDX,SMARCC2,QSER1,PPP1R12A,LRBA,POLR1B,TMEM161B,BBS4,KIAA1109,STRN3,KAT6B,EDEM1,C11orf58,NEDD1,FCHO2,MAT2B,STX2,PBRM1,SRRM2,ZSWIM8,ANKRD28,HEATR6,VPS13B,RAD21,FAM193A,PTCD3,SRP72,MAN1A2,MTF2,JAG1,TRIM5,YEATS2,NECAP1,ATP11B,PRRC2C,HP1BP3,CSPP1,ACBD5,PHF3,LONP2,ARID1B,TTC3,PHF20,CDC27,GTF2H3,TMCO3,SMARCC1,FBXO11,CLASP2,DDX6,GANAB,CEP192,MFSD9,RNF38,PSME3,RB1CC1,TIMM23B,SMAD1,WIPF2,AGFG1,MYCBP2,FBXL20,CASC3,MKRN2,MED12,TP53BP2,PRR12,YAP1,POC1B,GTF3C3,SEC63,PROSER3,MARCHF7,OSBPL8,FBH1,DDX5,GNPDA2,PACRGL,KAT7,MTRR,AZI2,UBAP2L,DCP1A,ACTR2,DCAF7,VAMP7,PTPRM,CNOT8,ALMS1,ABL2,MED1,NUP58,GTF2I,HBP1,EIF4G2,CDC23,CLASP1,CUL2,PRKAR1A,MIS18BP1,ERAP1,FARP1,ZZEF1,KMT2E,NSRP1,FBXO3,EDRF1,MED23,ARFGEF1,ICE2,DPP8,FNDC3B,ATF1,UBFD1,NOL4L,RPRD1A,SPOPL,KATNIP,NOMO2,FAM168B,BICD1,TASP1,SINHCAF,APPL2,SLC30A6,VPS4B,UHRF1BP1L,NEPRO,KLHL28,NAF1,PIBF1,FRS2,FCHSD2,TOM1L1,MLXIP,DNM2,FOXJ3,EDC4,LARP1,UBXN7,NPEPPS,FASTKD5,MPPE1,RNF214,BZW1,HECTD1,DCTN4,ARHGEF11,TUT4,PPP6R1,PKN2,GPATCH2L,ARIH1,FNDC3A,PUM1,SEC24B,FOXN2,ZFP1,AGAP1,FAM91A1,RUFY2,KMT2D,FUBP1,PKD2,EXOC7,ANAPC1,MON2,CEP57,SRRM1,MAPK14,RNF111,TP53BP1,VPS37A,TUBGCP4,PRRC2A,TFDP2,WDR48,PPIP5K2,USP32,TTLL5,G3BP1,GIGYF2,ANKIB1,STAT3,PIAS1,WDR19,RUNDC1,DNMT1,TWF1,BRD2,PAN3,AFF4,RCOR1,DDX3X,IPO5,CRIM1,LSM14A,USP47,POLR2B,ESF1,FRYL,BAZ2A,CEP350,R3HDM1,RPL7L1,TPM4,ASH1L,SLC35A5,DENND4A,GNPTAB,MED13,RAP1B,EP400,XRN1,SMG6,PHF12,FAM149B1,LTN1,ADNP2,NUP98,CCNT2,RIT1,ZCCHC14,ATP11A,CIAO1,CDK12,TRIP12,ENOSF1,PSMD5,CHD2,CHD9,PRKAA1,MPHOSPH8,KANSL2,RNF41,MYO18A,SOS1,SMAD5,SLC12A6,CSNK1A1,IQCK,ZEB1,TUBGCP3,ABI2,GOSR1,PPP3CB,AKIRIN1,PHF20L1,CFLAR,CTNNA1,ELF1,VRK2,TAF2,GCC2,CHD6,TEX2,TRIM33,CPSF6,PIP5K1A,FEM1B,RUSF1,THOC2,C2orf49,CELF1,SAMD4B,HAUS2,DOCK1,CCNK,NEMF,TMX3,CTDSP2,WSB1,SDAD1,FNBP1L,TAF5L,SCAF11,TCTN3,CNOT1,TMEM170A,NF1,TOPBP1,CAMSAP2,PCF11,DSTYK,RBBP4,C18orf25,SYNGAP1,SRSF2,ITSN1,SLC11A2,USP15,NCBP3,NUP155,SECISBP2L,UBR1,DAG1,SEPTIN10,CHD8,DHX40,TAOK3,TSR1,MED14,STAMBP,BAZ2B,PRDM2,ARPP19,TANC1,UBE4A,VPS26A,DCUN1D1,MAP3K2,DNAJC14,ATL2,METTL4,ANKRD11,ZC3H11A,ATF7,KATNAL1,MACF1,SH3GLB1,DHX8,RIC1,CTBP2,SPRED2,C5orf24,AFDN,ATXN2L,USP28,SEC24D,UBE2D3,OTUD4,DYNC1I2,DOCK7,ZDHHC17,SEPTIN11,IREB2,RFFL,CLIP1,SART3,ARNT,FAM219B,PPIL4,USP48,RAI1,ATF2,LENG8,UBE3B,RC3H2,SNAP23,RSRC2,TULP3,XPO1,CCSER2,STK38L,AP2B1,UBR5,TBC1D2B,EYA3,MIER3,USP9X,ROCK2,CCDC88A,C1orf109,RHBDD1,DESI2,KDM5C,SATB1,HSPA14,RBM43,TGFBRAP1,RREB1,BRPF1,SSH1,RBM41,SOCS7,PFAS,EPS15,CCNYL1,RUFY3,ASCC3,OSBPL9,LYSMD3,KMT2A,GOLGA2,GFM2,ANKRD26,USP7,PCMTD2,NFAT5,KIF2A,PPIG,REST,SLC30A5,THRAP3,POLK,CEP290,DYRK1A,AFF1,ABCE1,CARM1,DPY19L4,USP8,ABHD16A,ABCD3,MAGT1,ECD,CMTR1,SPG11,GANC,ATP2B1,MSL1,GLYR1,ZNF91,MBTD1,IBTK,FER,TANK,CEP295,RAB6A,KPNB1,TULP4,GSK3B,VPS26C,QKI,AEBP2,BOD1L1,CEP170,OXSR1,NT5C2,ZMYND11,RALGAPB,SENP2,HIPK1,QRICH1,RNF40,QTRT2,CDKL5,NSD3,INTS6,NUP50,TRIM37,PTPN11,SCYL2,MCM3AP,AMN1,SYNJ2,GGNBP2,ZNF17,POLR2A,CNTRL,ANKFY1,FGD6,DNAJC11,NR2C2,DIP2A,CLTC,ATRN,SLC25A36,CIC,PARG,PIK3C3,CCDC47,UIMC1,PTPN12,NRP1,APAF1,ASCC1,TAF1,C17orf80,DMXL2,DDI2,CDC42SE2,VIRMA,ZNF720,POLR3A,TTBK2,SMARCA2,SMPD4,CMTR2,SESTD1,FBXW11,GSTCD,KLF7,BPTF,PCNT,ARHGAP5,MFSD14A,CSNK2A1,TJP1,PIGB,FTO,SETD5,NIPA2,PWWP2A,MTMR9,SEPTIN8,DYNC1LI2,KBTBD4,MIDEAS,ZC3H15,RASA1,UGGT2,UBXN4,SENP6,MBTPS1,MED13L,SF3A1,PHC3,SEPTIN2,MEAF6,SIK3,AKAP8,KMT2B,SERINC3,TBC1D23,OGFOD1,IKZF4,ERC1,TNPO1,RHOT1,PHC1,ACLY,PGM3,NEK7,FAM160B1,SPTLC1,RO60,NCAPD3,CSNK1G3,HEATR5B,SEC31A,CALCOCO1,CYFIP1,ZNF28,LSM12,TMEM184C,ATRX,DENND5A,BCOR,KIAA0753,SLC30A7,TPP2,USP10,MIA3,KIAA1191,AFAP1,EPC1,UBE2W,NSD1,SUPT20H,MPHOSPH9 | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | | ENSG00000258920 | ENST00000555562 | exon_skip_507736 | chr9:129915965-129915980 | -4.94 | -2.4700 | FNBP1 | ENST00000446176 | In-frame |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000258920 | ENST00000555562 | exon_skip_90104 | chr12:10709907-10710114 | -35.01 | -0.1956 | YBX3 | ENST00000228251 | In-frame | | ENSG00000258920 | ENST00000555562 | exon_skip_291980 | chr17:59119318-59119495 | -13.94 | -0.1394 | SKA2 | ENST00000330137 | In-frame |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation | | ENSG00000258920 | ENSG00000067221 | STOML1 | ACC,DLBC,KICH,KIRP,MESO,PCPG,PRAD,READ,SARC,TGCT,UCS,UVM | KICH | | | ENSG00000258920 | ENSG00000100147 | CCDC134 | ACC,BLCA,HNSC,KICH,READ,TGCT,THCA,UCEC,UVM | KICH | | | ENSG00000258920 | ENSG00000100577 | GSTZ1 | ACC,BLCA,CESC,COAD,DLBC,ESCA,GBM,HNSC,KICH,KIRC,KIRP,LGG,LUSC,OV,PAAD,PCPG,PRAD,READ,SKCM,STAD,THCA,THYM | KICH | | | ENSG00000258920 | ENSG00000133943 | DGLUCY | ACC,KICH,LUSC,SARC,THYM | KICH | | | ENSG00000258920 | ENSG00000138495 | COX17 | ACC,DLBC,GBM,KICH,KIRP,LGG,PRAD,TGCT,THCA,THYM,UCEC | KICH | | | ENSG00000258920 | ENSG00000149809 | TM7SF2 | ACC,BLCA,DLBC,GBM,KICH,KIRC,STAD,TGCT,THCA,UCEC | KICH | | | ENSG00000258920 | ENSG00000154723 | ATP5PF | ACC,CESC,CHOL,DLBC,GBM,KIRP,LGG,PCPG,PRAD,THCA | | CHOL | | ENSG00000258920 | ENSG00000156411 | ATP5MJ | ACC,BLCA,BRCA,CESC,CHOL,COAD,DLBC,GBM,HNSC,KICH,KIRC,KIRP,LGG,LIHC,LUSC,MESO,OV,PAAD,PCPG,PRAD,READ,SKCM,THCA,THYM,UCEC,UCS | KICH | | | ENSG00000258920 | ENSG00000175854 | SWI5 | ACC,BLCA,BRCA,CESC,DLBC,GBM,HNSC,KICH,KIRC,KIRP,LGG,LIHC,PAAD,READ,TGCT,THCA,THYM,UCEC | KICH | | | ENSG00000258920 | ENSG00000183648 | NDUFB1 | ACC,BLCA,BRCA,CESC,CHOL,COAD,DLBC,ESCA,GBM,HNSC,KICH,KIRC,KIRP,LGG,LIHC,LUSC,OV,PCPG,PRAD,READ,SARC,SKCM,STAD,TGCT,THCA,THYM,UCEC | | CHOL | | ENSG00000258920 | ENSG00000005075 | POLR2J | BLCA,BRCA,CESC,CHOL,DLBC,GBM,HNSC,KICH,KIRC,KIRP,LGG,OV,READ,THCA,THYM,UCEC,UCS | KICH | | | ENSG00000258920 | ENSG00000008382 | MPND | BLCA,CHOL,DLBC,HNSC,KICH,KIRC,KIRP,LGG,PCPG,PRAD,READ,TGCT,THCA,UCEC,UVM | | CHOL | | ENSG00000258920 | ENSG00000105669 | COPE | BLCA,CHOL,DLBC,HNSC,KICH,KIRC,KIRP,LGG,MESO,PCPG,PRAD,THCA | KICH | | | ENSG00000258920 | ENSG00000106268 | NUDT1 | BLCA,BRCA,CESC,CHOL,DLBC,HNSC,KICH,KIRP,LGG,READ,THCA,UCS | KICH | | | ENSG00000258920 | ENSG00000110717 | NDUFS8 | BLCA,CESC,DLBC,ESCA,HNSC,KICH,KIRC,KIRP,LGG,OV,SARC,TGCT,THCA | KICH | | | ENSG00000258920 | ENSG00000122971 | ACADS | BLCA,GBM,KICH,KIRC,KIRP,LGG,SKCM,THCA,UCEC,UCS | KICH | | | ENSG00000258920 | ENSG00000124172 | ATP5F1E | BLCA,CESC,CHOL,DLBC,GBM,HNSC,KICH,KIRC,KIRP,LGG,LIHC,MESO,PCPG,PRAD,READ,TGCT,THCA,THYM,UCEC | KICH | | | ENSG00000258920 | ENSG00000126953 | TIMM8A | BLCA,CESC,HNSC,KICH,KIRP,LIHC,THCA,THYM | KICH | | | ENSG00000258920 | ENSG00000127554 | GFER | BLCA,CHOL,DLBC,HNSC,KICH,KIRC,KIRP,PCPG,PRAD,READ,SARC,TGCT,THCA,UCEC | KICH | | | ENSG00000258920 | ENSG00000127922 | SEM1 | BLCA,BRCA,CESC,CHOL,DLBC,ESCA,GBM,HNSC,KICH,KIRC,KIRP,LGG,LIHC,THCA,THYM,UCEC,UCS | KICH | | | ENSG00000258920 | ENSG00000128185 | DGCR6L | BLCA,BRCA,CESC,CHOL,COAD,DLBC,ESCA,HNSC,KIRC,KIRP,LGG,PAAD,PCPG,PRAD,READ,TGCT,THCA,THYM,UVM | | CHOL | | ENSG00000258920 | ENSG00000130810 | PPAN | BLCA,CHOL,HNSC,KICH,KIRC,KIRP,LGG,PCPG,PRAD,READ,THCA,THYM,UCEC | KICH | | | ENSG00000258920 | ENSG00000139410 | SDSL | BLCA,CHOL,COAD,GBM,KIRP,LGG,PAAD,PCPG,PRAD,READ,SARC,TGCT,THCA,THYM,UCEC | | CHOL | | ENSG00000258920 | ENSG00000149761 | NUDT22 | BLCA,DLBC,HNSC,KICH,KIRC,KIRP,LGG,SARC,TGCT,THCA | KICH | | | ENSG00000258920 | ENSG00000164713 | BRI3 | BLCA,BRCA,GBM,HNSC,KICH,KIRC,KIRP,LGG,READ,SKCM,TGCT,THCA,THYM,UCS | KICH | | | ENSG00000258920 | ENSG00000164896 | FASTK | BLCA,CESC,CHOL,HNSC,KICH,LGG,LIHC,PAAD,READ,SKCM,TGCT,THCA,THYM,UCEC,UCS | KICH | | | ENSG00000258920 | ENSG00000165644 | COMTD1 | BLCA,BRCA,CESC,GBM,HNSC,KICH,KIRC,KIRP,LGG,OV,TGCT,THCA,UCEC | KICH | | | ENSG00000258920 | ENSG00000166166 | TRMT61A | BLCA,BRCA,CESC,COAD,DLBC,HNSC,KICH,KIRC,KIRP,LGG,LIHC,LUSC,PCPG,PRAD,SARC,THCA,THYM,UCS | KICH | | | ENSG00000258920 | ENSG00000167747 | C19orf48 | BLCA,CHOL,KICH,KIRC,KIRP,PCPG,PRAD,THCA | KICH | | | ENSG00000258920 | ENSG00000170906 | NDUFA3 | BLCA,BRCA,CESC,CHOL,DLBC,HNSC,KICH,KIRC,KIRP,LGG,LIHC,PCPG,PRAD,READ,SKCM,TGCT,THCA,THYM,UCEC | KICH | | | ENSG00000258920 | ENSG00000172366 | MCRIP2 | BLCA,DLBC,HNSC,KICH,KIRC,KIRP,LGG,OV,PCPG,PRAD,READ,SARC,TGCT,THCA,THYM,UCEC,UCS | KICH | | | ENSG00000258920 | ENSG00000173457 | PPP1R14B | BLCA,CESC,ESCA,HNSC,KICH,KIRP,LGG,STAD,THCA,UVM | KICH | | | ENSG00000258920 | ENSG00000173511 | VEGFB | BLCA,CESC,DLBC,HNSC,KICH,KIRC,KIRP,LGG,SARC,SKCM,STAD,TGCT,THCA,UVM | KICH | | | ENSG00000258920 | ENSG00000173992 | CCS | BLCA,CESC,CHOL,COAD,DLBC,HNSC,KIRC,KIRP,LGG,READ,SKCM,TGCT,THCA,UCEC,UVM | | CHOL | | ENSG00000258920 | ENSG00000174165 | ZDHHC24 | BLCA,CESC,HNSC,KICH,KIRP,TGCT,THCA | KICH | | | ENSG00000258920 | ENSG00000184076 | UQCR10 | BLCA,CESC,CHOL,DLBC,HNSC,KICH,KIRC,KIRP,LGG,LUSC,PCPG,PRAD,READ,TGCT,THCA,THYM | KICH | | | ENSG00000258920 | ENSG00000184207 | PGP | BLCA,CESC,CHOL,HNSC,KICH,KIRC,KIRP,PCPG,PRAD,READ,SARC,STAD,TGCT,THCA,UCEC | KICH | | | ENSG00000258920 | ENSG00000198931 | APRT | BLCA,BRCA,CESC,COAD,DLBC,HNSC,KICH,KIRC,KIRP,LGG,OV,PCPG,PRAD,READ,TGCT,THCA,THYM,UCEC | KICH | | | ENSG00000258920 | ENSG00000228300 | FAM174C | BLCA,CESC,CHOL,DLBC,HNSC,KICH,KIRC,KIRP,LGG,OV,PCPG,PRAD,READ,TGCT,THCA,THYM,UCEC,UVM | KICH | | | ENSG00000258920 | ENSG00000241343 | RPL36A | BLCA,CESC,HNSC,KICH,KIRC,KIRP,LGG,LIHC,PCPG,PRAD,READ,THCA,THYM,UCEC | KICH | | | ENSG00000258920 | ENSG00000250479 | CHCHD10 | BLCA,BRCA,CESC,DLBC,HNSC,KICH,KIRC,KIRP,LGG,PCPG,PRAD,READ,SARC,TGCT,THCA,THYM,UCEC | KICH | | | ENSG00000258920 | ENSG00000071859 | FAM50A | BRCA,DLBC,HNSC,KICH,KIRC,KIRP,LGG,MESO,PCPG,PRAD,TGCT,THCA,THYM,UCEC | KICH | | | ENSG00000258920 | ENSG00000071889 | FAM3A | BRCA,CESC,DLBC,GBM,HNSC,KICH,KIRC,KIRP,LGG,LUSC,OV,PCPG,PRAD,SKCM,TGCT,THCA,THYM,UCEC,UCS | KICH | | | ENSG00000258920 | ENSG00000100075 | SLC25A1 | BRCA,CHOL,DLBC,HNSC,KICH,LIHC,PRAD,TGCT,THCA,THYM,UVM | | CHOL | | ENSG00000258920 | ENSG00000101400 | SNTA1 | BRCA,CESC,COAD,DLBC,GBM,KICH,KIRP,LGG,MESO,PAAD,PCPG,PRAD,READ,SARC,SKCM,TGCT,UCEC,UVM | KICH | | | ENSG00000258920 | ENSG00000131143 | COX4I1 | BRCA,DLBC,HNSC,KICH,KIRC,KIRP,LGG,PCPG,PRAD,READ,THCA,THYM | KICH | | | ENSG00000258920 | ENSG00000166337 | TAF10 | BRCA,CESC,CHOL,DLBC,GBM,KICH,KIRP,LGG,LIHC,OV,SKCM,TGCT,THCA,UCEC,UCS,UVM | KICH | | | ENSG00000258920 | ENSG00000179526 | SHARPIN | BRCA,DLBC,HNSC,KICH,KIRC,LGG,LIHC,OV,READ,TGCT,THCA,THYM,UCEC | KICH | | | ENSG00000258920 | ENSG00000187954 | CYHR1 | BRCA,DLBC,HNSC,KICH,KIRC,READ,TGCT,THCA,THYM,UCEC | KICH | | | ENSG00000258920 | ENSG00000123415 | SMUG1 | CESC,CHOL,COAD,DLBC,GBM,HNSC,KICH,KIRC,KIRP,LIHC,PCPG,PRAD,TGCT,THCA | KICH | | | ENSG00000258920 | ENSG00000128524 | ATP6V1F | CESC,CHOL,KICH,KIRP,LGG,STAD,THCA,THYM | KICH | | | ENSG00000258920 | ENSG00000174516 | PELI3 | CESC,KICH,KIRC,LAML,PAAD,READ,SKCM,TGCT,UCS,UVM | KICH | | | ENSG00000258920 | ENSG00000189227 | C15orf61 | CESC,KICH,KIRP,MESO,OV,PAAD,PRAD,THYM | KICH | | | ENSG00000258920 | ENSG00000004866 | ST7 | CHOL,GBM,KICH,KIRC,THYM,UCS | KICH | CHOL | | ENSG00000258920 | ENSG00000027847 | B4GALT7 | CHOL,DLBC,HNSC,KICH,LGG,PAAD,SKCM,TGCT,THCA,THYM,UCEC | KICH | | | ENSG00000258920 | ENSG00000103227 | LMF1 | CHOL,KICH,PCPG,PRAD,TGCT,THCA | KICH | | | ENSG00000258920 | ENSG00000105676 | ARMC6 | CHOL,KICH,KIRP,PAAD,PCPG | | CHOL | | ENSG00000258920 | ENSG00000110011 | DNAJC4 | CHOL,DLBC,GBM,HNSC,KICH,KIRC,LGG,READ,SARC,SKCM,STAD,TGCT,THCA,THYM,UVM | KICH | | | ENSG00000258920 | ENSG00000119655 | NPC2 | CHOL,COAD,GBM,HNSC,KICH,KIRC,KIRP,LGG,MESO,PCPG,SKCM,THYM,UVM | KICH | | | ENSG00000258920 | ENSG00000126088 | UROD | CHOL,COAD,DLBC,GBM,HNSC,KIRC,KIRP,LGG,OV,PRAD,TGCT,THCA | | CHOL | | ENSG00000258920 | ENSG00000128973 | CLN6 | CHOL,KICH,KIRC,KIRP,LGG,PRAD,SKCM,THCA,THYM | KICH | | | ENSG00000258920 | ENSG00000129932 | DOHH | CHOL,ESCA,HNSC,KICH,KIRC,KIRP,LGG,PAAD,PCPG,PRAD,THCA | KICH | | | ENSG00000258920 | ENSG00000153443 | UBALD1 | CHOL,DLBC,HNSC,PCPG,PRAD,THCA,THYM | | CHOL | | ENSG00000258920 | ENSG00000166165 | CKB | CHOL,KICH,KIRC,LGG,SARC,TGCT | KICH | | | ENSG00000258920 | ENSG00000176046 | NUPR1 | CHOL,GBM,KICH,KIRP,LGG,PRAD,READ,THYM | KICH | CHOL | | ENSG00000258920 | ENSG00000186792 | HYAL3 | CHOL,KICH,THYM,UCEC,UCS | | CHOL | | ENSG00000258920 | ENSG00000242802 | AP5Z1 | CHOL,DLBC,KICH,KIRP,THCA | KICH | | | ENSG00000258920 | ENSG00000244165 | P2RY11 | CHOL,KICH,PAAD,PRAD,THCA,THYM | KICH | | | ENSG00000258920 | ENSG00000248487 | ABHD14A | CHOL,COAD,DLBC,LIHC,PAAD,PRAD,STAD,TGCT,THCA | | CHOL | | ENSG00000258920 | ENSG00000133597 | ADCK2 | COAD,GBM,KICH,OV,PAAD,READ,SARC,THCA | KICH | | | ENSG00000258920 | ENSG00000155463 | OXA1L | COAD,DLBC,KICH,KIRC,KIRP,PCPG,THCA,THYM,UVM | KICH | | | ENSG00000258920 | ENSG00000168569 | TMEM223 | COAD,DLBC,KICH,LGG,LIHC,TGCT,THCA | KICH | | | ENSG00000258920 | ENSG00000172301 | COPRS | COAD,DLBC,GBM,HNSC,KICH,KIRC,KIRP,LGG,PAAD,PCPG,PRAD,STAD,TGCT,THCA,THYM,UVM | KICH | | | ENSG00000258920 | ENSG00000104964 | TLE5 | DLBC,KICH,KIRC,TGCT,THCA | KICH | | | ENSG00000258920 | ENSG00000106077 | ABHD11 | DLBC,GBM,KICH,LGG,READ,SKCM,TGCT,THCA,THYM | KICH | | | ENSG00000258920 | ENSG00000119421 | NDUFA8 | DLBC,KICH,KIRC,KIRP,THCA,THYM | KICH | | | ENSG00000258920 | ENSG00000119559 | C19orf25 | DLBC,KICH,KIRC,LGG,PAAD,PCPG,PRAD,TGCT,THCA,THYM,UCS | KICH | | | ENSG00000258920 | ENSG00000130159 | ECSIT | DLBC,KICH,KIRC,KIRP,PAAD,PCPG,PRAD,THCA | KICH | | | ENSG00000258920 | ENSG00000131153 | GINS2 | DLBC,KICH,READ,STAD,TGCT | KICH | | | ENSG00000258920 | ENSG00000164919 | COX6C | DLBC,HNSC,KICH,KIRC,KIRP,LGG,READ,THCA,THYM,UCEC | KICH | | | ENSG00000258920 | ENSG00000166619 | BLCAP | DLBC,KICH,LAML,LIHC,SKCM,TGCT,THCA,UCS | KICH | | | ENSG00000258920 | ENSG00000184489 | PTP4A3 | DLBC,KICH,READ,TGCT,UCS | KICH | | | ENSG00000258920 | ENSG00000189043 | NDUFA4 | DLBC,KICH,KIRP,SARC,THCA,THYM | KICH | | | ENSG00000258920 | ENSG00000167705 | RILP | GBM,KICH,KIRC,KIRP,PCPG,PRAD,SKCM,THCA,THYM,UCEC | KICH | | | ENSG00000258920 | ENSG00000175482 | POLD4 | GBM,KICH,KIRP,LGG,TGCT,THCA | KICH | | | ENSG00000258920 | ENSG00000131368 | MRPS25 | HNSC,KICH,PCPG,PRAD,READ,THCA,THYM,UCEC | KICH | | | ENSG00000258920 | ENSG00000148334 | PTGES2 | HNSC,KICH,KIRC,KIRP,THCA,THYM | KICH | | | ENSG00000258920 | ENSG00000174177 | CTU2 | HNSC,KICH,PCPG,PRAD,THCA,UVM | KICH | | | ENSG00000258920 | ENSG00000055118 | KCNH2 | KICH,PAAD,SARC,STAD,THYM,UCS | KICH | | | ENSG00000258920 | ENSG00000075399 | VPS9D1 | KICH,PCPG,PRAD,TGCT,THCA,THYM | KICH | | | ENSG00000258920 | ENSG00000088356 | PDRG1 | KICH,PAAD,PCPG,PRAD,TGCT,THCA,THYM | KICH | | | ENSG00000258920 | ENSG00000101986 | ABCD1 | KICH,LAML,MESO,TGCT,THYM,UCS | KICH | | | ENSG00000258920 | ENSG00000116670 | MAD2L2 | KICH,KIRC,PRAD,STAD,THCA | KICH | | | ENSG00000258920 | ENSG00000117984 | CTSD | KICH,KIRP,LGG,THCA,UVM | KICH | | | ENSG00000258920 | ENSG00000125967 | NECAB3 | KICH,PAAD,SARC,THYM,UCEC | KICH | | | ENSG00000258920 | ENSG00000130204 | TOMM40 | KICH,KIRP,PCPG,PRAD,THCA,THYM | KICH | | | ENSG00000258920 | ENSG00000130312 | MRPL34 | KICH,LGG,PCPG,PRAD,SARC | KICH | | | ENSG00000258920 | ENSG00000136856 | SLC2A8 | KICH,KIRP,LGG,PAAD,TGCT,THCA,THYM | KICH | | | ENSG00000258920 | ENSG00000142530 | FAM71E1 | KICH,KIRP,PAAD,PRAD,THCA | KICH | | | ENSG00000258920 | ENSG00000171130 | ATP6V0E2 | KICH,LAML,LIHC,PAAD,STAD | KICH | | | ENSG00000258920 | ENSG00000177548 | RABEP2 | KICH,PRAD,TGCT,THCA,THYM | KICH | | | ENSG00000258920 | ENSG00000182054 | IDH2 | KICH,MESO,SARC,TGCT,UCS | KICH | | | ENSG00000258920 | ENSG00000185442 | FAM174B | KICH,PAAD,PRAD,SKCM,TGCT,UCS | KICH | | | ENSG00000258920 | ENSG00000197620 | EOLA1 | KICH,PAAD,TGCT,THYM,UCS | KICH | | | ENSG00000258920 | ENSG00000224051 | CPTP | KICH,PRAD,TGCT,THCA,THYM,UCS | KICH | |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation | | ENSG00000258920 | ENST00000555562 | IQCK | ENSG00000174628 | ENST00000564186 | -0.7550 | 316 | CHOL | KICH | | ENSG00000258920 | ENST00000555562 | IQCK | ENSG00000174628 | ENST00000561839 | -0.1105 | 1 | CHOL | KICH | | ENSG00000258920 | ENST00000555562 | IQCK | ENSG00000174628 | ENST00000561935 | -0.1122 | 1 | CHOL | KICH | | ENSG00000258920 | ENST00000555562 | IQCK | ENSG00000174628 | ENST00000568061 | -0.2085 | 178 | CHOL | KICH | | ENSG00000258920 | ENST00000555562 | DHX40 | ENSG00000108406 | ENST00000425628 | -0.1545 | 480 | - | KICH | | ENSG00000258920 | ENST00000555562 | PKD2 | ENSG00000118762 | ENST00000508588 | -0.1468 | 296 | - | KICH | | ENSG00000258920 | ENST00000555562 | PKD2 | ENSG00000118762 | ENST00000502363 | -1.7450 | 518 | - | KICH | | ENSG00000258920 | ENST00000555562 | TMCO3 | ENSG00000150403 | ENST00000434316 | -0.1437 | 1 | CHOL | - | | ENSG00000258920 | ENST00000555562 | TMCO3 | ENSG00000150403 | ENST00000375391 | -0.1107 | 1 | CHOL | - | | ENSG00000258920 | ENST00000555562 | TMCO3 | ENSG00000150403 | ENST00000473287 | -0.2582 | 760 | CHOL | - | | ENSG00000258920 | ENST00000555562 | DOCK1 | ENSG00000150760 | ENST00000623213 | -0.3442 | 81 | - | KICH | | ENSG00000258920 | ENST00000555562 | CCNYL1 | ENSG00000163249 | ENST00000420321 | -0.1477 | 119 | - | KICH | | ENSG00000258920 | ENST00000555562 | TPM4 | ENSG00000167460 | ENST00000592822 | -0.2803 | 209 | CHOL | KICH | | ENSG00000258920 | ENST00000555562 | SEPTIN2 | ENSG00000168385 | ENST00000401990 | -0.1456 | 146 | CHOL | KICH | | ENSG00000258920 | ENST00000555562 | SEPTIN2 | ENSG00000168385 | ENST00000457335 | -0.1043 | 45 | CHOL | KICH | | ENSG00000258920 | ENST00000555562 | AFAP1 | ENSG00000196526 | ENST00000382543 | -0.1582 | 64 | CHOL | KICH | | ENSG00000258920 | ENST00000555562 | AFAP1 | ENSG00000196526 | ENST00000614385 | -0.1273 | 15 | CHOL | KICH | | ENSG00000258920 | ENST00000555562 | JAG1 | ENSG00000101384 | ENST00000613518 | -0.3150 | 574 | CHOL | KICH | | ENSG00000258920 | ENST00000555562 | JAG1 | ENSG00000101384 | ENST00000622545 | -0.1424 | 1 | CHOL | KICH | | ENSG00000258920 | ENST00000555562 | TOM1L1 | ENSG00000141198 | ENST00000570371 | -0.2738 | 429 | - | KICH | | ENSG00000258920 | ENST00000555562 | TOM1L1 | ENSG00000141198 | ENST00000576932 | -0.1472 | 45 | - | KICH | | ENSG00000258920 | ENST00000555562 | TOM1L1 | ENSG00000141198 | ENST00000572158 | -0.2018 | 462 | - | KICH | | ENSG00000258920 | ENST00000555562 | TOM1L1 | ENSG00000141198 | ENST00000572360 | -0.1051 | 1 | - | KICH | | ENSG00000258920 | ENST00000555562 | TOM1L1 | ENSG00000141198 | ENST00000574318 | -0.1708 | 70 | - | KICH | | ENSG00000258920 | ENST00000555562 | WDR19 | ENSG00000157796 | ENST00000399820 | -0.1423 | 1 | - | KICH | | ENSG00000258920 | ENST00000555562 | WDR19 | ENSG00000157796 | ENST00000507228 | -0.1160 | 88 | - | KICH |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000258920.1 | ENST00000555562.1 | 57 | 172 | 2 |
|
