 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | FKBP8,MAD2L2,GIPC1,GSDMB,ARL16,UXT,PHETA1,EPOR,SLIRP,ISG20,NDUFS3,TNFRSF4,ZSWIM9,TUBGCP2,CTF1,THAP4,KRT10,LTB,MCRS1,ANTKMT,TMEM234,C12orf57,NAPRT,CIRBP,PSMB7,PET100,RNF166,DAPK3,SART1,CMC2,ATP5MG,WDR83OS,PEBP1,SHARPIN,DPM2,RGS10,DYNC2I2,SIRT3,RAB11B,QPCTL,SRP19,CACFD1,TMUB1,PPP2R3B,BCS1L,DCLRE1C,HINT2,CTU1,ACD,RPS27A,DPP7,TMEM179B,XAB2,HAGHL,LMBR1L,B3GAT3,CENPB,PNKD,MRPS12,NDUFB9,NDUFA11,ULK3,RCE1,RPL26L1,METTL5,PRKAR1B,NPEPL1,TMEM203,SNRPA,SMUG1,TMC8,SAFB2,KCTD13,DTYMK,TRAPPC2L,CCNQ,FAAP20,ADAP1,C6orf136,COMMD7,COA3,SURF2,TERF2IP,PRKD2,VASP,EIF3G,TPRN,NDUFA3,DOK1,PPIH,INPP5K,RECQL4,COA4,RAB34,SLC66A2,TRIP10,PAF1,CDK2AP2,SVBP,SPRN,MICOS13,TAZ,SUGP1,SPG7,NAA80,SIGIRR,NABP2,FAM104B,C19orf44,NDUFB2,UQCR11,PSMD13,GTF2H5,UBAC2,USE1,PITHD1,ECHDC2,GLRX5,BNIP1,SDF2,TMEM208,RAB4B,CDC42EP5,COX19,ERAL1,UQCC2,RNF187,TARBP2,AGPAT2,ILKAP,VKORC1,LYRM4,CISD3,DHX34,LYPLAL1,PRCC,RING1,ENSA,PSENEN,CHKB,CEP89,METTL17,UROD,TMEM39B,SNHG32,BBC3,TRIM11,CBY1,ABHD14B,WDR83,OSGEP,USF1,MAD1L1,ITGB3BP,NASP,LLGL2,RPS6KB2,ANKRD39,DHPS,RPAIN,MPST,WASHC3,PAOX,OFD1,HSPE1,BTF3,BABAM1,GPR137,CARS2,FAM214B,ACYP1,MRPL14,MRPS34,TOMM40,ENO3,SLC25A29,RPS28,PIH1D1,CTU2,ELMO3,CRELD2,CDKN2AIPNL,CFAP298,GAR1,DERL2,TSSC4,B3GALT6,DDX49,PGAP3,C19orf48,PFDN6,MFSD3,COMT,RBM42,ATP5MK,CFL1,C3orf62,CYSRT1,YJU2,NOC4L,TNNC2,TMEM101,C17orf97,ALKBH2,MEA1,RPL35,NDUFA2,BORCS6,CLPP,MIIP,TMEM160,LPAR2,PARL,ATP5PD,FDX2,C18orf21,HDHD3,SH2D3A,MCAT,CYBA,C12orf73,DDX51,AGER,FUZ,ESS2,DYNLT1,PSMB3,SPOUT1,TSC22D4,CDK11A,MTLN,SYMPK,MRPS2,TSEN54,NAGPA,VARS2,ZNF593,UBE2C,PLEKHA4,CENPM,MRPL57,PAFAH1B3,BORCS8,FAM229A,CCS,COX6C,YIF1B,FBXW9,CDKN2D,CCDC159,PARP10,NUPR1,HMGN3,CCDC167,EBPL,TK1,FAM193B,SLC25A39,NDUFB1,CENPH,PNKP,ABCA7,NOL3,SLC25A28,P3H4,ARFGAP2,CZIB,MLF2,RABL6,MPG,CIR1,PDRG1,ARHGAP33,HDAC5,STAP2,ELOF1,RPA3,HEXD,COA6,IFT122,SDHAF2,EEFSEC,TUFM,HDAC8,RPL23A,IDH3B,ALG1L,SPATC1L,PMVK,ANAPC11,SCNN1D,CCDC24,TOR2A,MRPS25,RRP7A,RHOT2,CCDC12,EIF3K,PTRHD1,KRTCAP3,FDXR,DECR2,CCDC34,ALKBH3,KIF12,THOC7,CDK5,COX7A2,ERCC5,CLTB,SLC22A18,DDT,MCRIP1,SDF2L1,CYB561D2,DEF6,POC1A,SLC9A3R2,PCYT2,ABHD8,IQCC,RNFT2,TRIR,HCST,JMJD4,MRPL52,FAAP100,PRADC1,MMAB,RTRAF,MED16,TEDC2,GLI4,DNAJC4,MRPL55,EMG1,HMGCL,CCDC28B,RBBP8NL,NMRAL1,B4GALT2,NDUFB8,SSR4,COX6B1,JMJD6,RANBP3,SNRNP25,CRIP2,PPP1R12C,C1orf159,NDUFS8,DDX56,PRR3,OVOL2,NFU1,FAM98C,COX5A,IP6K2,PPOX,RTKN,BOP1,CD63,SWI5,NDUFB11,YIF1A,NPRL3,IFTAP,RPL23,ATP6V0B,AK1,C19orf53,INO80C,TAX1BP3,MRPL20,FNDC10,GUK1,EIF2B4,MRPL28,TIMM44,C20orf96,HSCB,ADPRM,RPL22L1,ARFGAP1,UCHL3,MIX23,HPF1,AP1G2,PFDN2,METRN,RPL13A,FAM136A,RPL37A,THOC1,LSM3,CTDSP1,C8orf58,SURF1,TMEM175,NUBP2,PTGES2,GNPTG,C16orf74,DNAJC8,LCMT1,NUTF2,C11orf68,GPN2,ACBD6,COMMD9,BCAP31,FIS1,CTDNEP1,BRI3,GTPBP6,IMP4,GDPD3,BST2,MRPL24,P2RY11,SPACA9,DUS2,STYXL1,PUF60,NECAB3,MAN1B1,SMPD2,UBL7,TMEM138,PSMC3,ASPHD1,FAM71E1,NPDC1,NAA38,LTO1,ABHD12,POLR3K,PIDD1,NME4,JTB,AP5Z1,TBL3,TBCA,METTL1,CWC15,CCDC106,CCDC137,CPSF4,GGCT,TUBB4B,EMD,NAA10,FBXO44,MED27,NELFE,DOHH,EXD3,METTL23,TMEM120A,NFKBID,GSDMD,P4HTM,TBC1D10B,PCED1A,ABTB1,MAF1,STX8,TUSC2,EPN1,RCN3,EVA1B,MVB12A,C11orf98,NT5DC2,SH3GL1,ELP5,EHMT2,TBCB,PGP,CHMP2A,SYCE1L,BRMS1,MRPS15,LMF1,PFN1,PPP1R3F,PRR7,RAB17,THOC6,POLRMT,UBOX5,ST3GAL3,MPND,LEMD2,CLEC11A,SCAMP3,PTTG1,LENG1,ZNF48,TADA2A,DENND6B,ATF4,PEX11G,CCHCR1,PRMT7,ZFYVE19,TRADD,SLC35C2,IFI27L2,REXO4,PTRH2,SGF29,NEK8,NAP1L1,NXT1,SF3A2,MBD3,POLR2L,PTPN6,SERF2,RPS10,QARS1,CRACR2B,FOXP1,SYNGR2,ZSWIM1,BCL7B,COMMD1,FIZ1,PSME1,PSMB10,TRPT1,EBP,TM7SF2,SUMO2,LTB4R,MRPL36,PSPN,VPS4A,ODF3B,RNF220,CSTB,MRPS9,NUDT22,ROGDI,CD2BP2,RABEP2,OGFR,PTOV1,PCSK4,ALKBH4,CDC37,PYURF,NDUFA12,PUSL1,DDX11,GSTO1,FRS3,NDUFAF5,C2orf68,FBXL8,SPC24,AP4M1,WDR54,PSMG2,ZNRF1,HMBS,FRG1,PARVG,KRTCAP2,S100A4,TRIM28,IDUA,TMEM134,SREK1IP1,PRMT1,POP5,CDIPT,SYF2,ORAI3,PDLIM7,ZDHHC24,TMEM91,GNG5,NTHL1,MYL5,UBXN6,SOD1,CUEDC2,UBAC1,TNFRSF14,UBE2L3,SCAND1,CKMT1B,COX14,PSME3IP1,PPP1R14B,STK32C,TCF25,NDUFA6,UBXN11,HSPBP1,HAGH,PTCD1,NDUFAF2,B9D1,DDX41,DTNBP1,PPCDC,ISOC2,SSBP3,S100A13,DCAF15,CROCC,CERS5,R3HDM4,RSAD1,USF2,NCAPH2,ATPAF2,RP9,COPRS,MIER2,RALY,CORO1B,ARHGEF25,TRIOBP,ACAP3,JOSD2,LRRC27,CASTOR1,CLDN5,SPAG7,TMEM187,EMC10,SRA1,NOSIP,MVD,ENKD1,RFC2,FAM3A,ATP5IF1,ZDHHC1,ACADS,VPS72,CPTP,PSME2,IDH3G,BLOC1S1,ATAT1,MORN2,C11orf1,DUT,NDUFS6,STMN1,PYM1,NUDT1,ATP5F1E,AP2S1,PEF1,ZBTB8OS,RPS27,NUDC,RASSF1,MSRA,MYPOP,CCDC107,CTBP1,MRPL34,POMT1,TACC3,NFKBIB,TOM1,PSMA2,SEM1,STARD3,TIGD5,ARF5,JPT1,CHTF18,CDPF1,TFEB,MRPL47,POMGNT1,UBE2J2,NAT14,MKS1,DNPH1,C1orf35,MYL12B,CCDC174,ACAP1,LSM10,TIMM13,MTIF3,ARL6IP4,CDK5RAP1,C7orf26,NDUFA7,LYPLA2,MARCHF9,TMEM150A,NPRL2,ZCWPW1,MRPL2,KLHDC4,EFNA4,CCDC85B,EIPR1,VAMP8,SMIM22,WDR24,DMPK,CLK3,HDAC11,GFER,UQCRB,ZER1,TIMM9,CHTOP,HHLA3,MIEN1,VAX2,LSM5,RFNG,SLC66A1,SLC52A2,MED25,CAPG,H2AJ,BCAT2,UQCRH,TP53I13,SEC61B,WDR45,COQ4,COPS9,DHRS12,ZMAT5,STX10,FIBP,SEPTIN1,KAT2A,PHLDB3,ECI1,ARMC5,UBALD1,ACBD4,PMF1-BGLAP,SNU13,LRRC23,RBPMS,CREB3,TMEM223,SIPA1,SNRPD3,PLA2G6,TMEM86B,COMTD1,ZBTB3,UQCRC1,MROH6,SAP18,RPL36AL,PPP1R7,SLC27A3,CEBPZOS,VAMP5,RHPN1,SLC25A10,ENDOV,COPE,DPY30,FLAD1,BLCAP,CCND3,FAM207A,PPIE,BSG,MRPL11,SLC2A8,FAM50A,ITPA,MAP2K2,BAD,SF3B6,RAMP2,CHMP1A,PTS,FAM162A,ELP6,TAPBP,PNPLA6,COX7B,CD151,PAQR6,EFNA3,CCDC22,ALKBH7,TMEM258,ERMARD,MRPL22,MYL6,EPS8L1,GEMIN7,PRR36,GEMIN6,JMJD8,PSMB8,EGFL7,C9orf116,TXN,MZT2B,PHF1,CETN2,ABHD11,HDAC10,DEAF1,HAUS7,CHADL,SCRN2,GMFG,RNF208,HSF4,ANKS3,ATRAID,NOXA1,MRPL17,YJEFN3,UCK1,DDA1,SMDT1,SEC61G,PIGQ,ANKRD54,TXNRD2,MARCKSL1,CHID1,LAMTOR1,TAF10,KRI1,DHRS3,RNF25,DBNL,BCL2L12,TMEM60,MICALL2,NFKBIL1,KRT18,CRYGS,SAC3D1,DYRK4,CENPS,MESP1,RPS6,B3GALT4,POLR1C,HSD3B7,NR2C2AP,CCDC96,MZT2A,PSMG4,PBX4,EIF2B3,ALDH16A1,PEX14,RETREG3,SFXN4,ARFRP1,CIAO2B,KIAA2013,MAGIX,IFI27L1,BRAT1,AAMDC,GPAA1,PELP1,PSMG3,MRPL27,MEN1,MYL6B,NOL7,UQCR10,VOPP1,C19orf25,RILP,FAM234A,ARPC4,TNIP2,IPO4,MYG1,DTX3,CSKMT,MTG2,ERCC1,PSMB1,RNF215,TLE5,MAPK11,NAT9,UBA7,CPNE1,ABHD14A,SUV39H1,IGFLR1,LUC7L,LSM2,KLHL22,TPGS1,PHLDA3,TRMT61A,COA5,DYNLL1,MICOS10,ECSCR,BTBD2,SERTAD1,MAP2K7,PPAN,C1orf54,C14orf93,TWF2,LRSAM1,DPH7,XRCC1,SSBP1,CBX8,RNF126,CKLF,ATP5F1D,SMARCD3,ATP5PF,RPS13,UBE2M,TCEA2,MRPL43,APRT,DUS1L,TOMM7,DHRS4,XPA,CD320,ECHS1,CRTC2,GPS1,RUVBL2,CNTROB,CYTH2,C8orf76,TBC1D22A,WDR74,B9D2,EIF3I,NOP53,RHBDL1,IRF2BP1,SMIM19,HEBP2,TLCD1,RANGAP1,NDUFAF8,FKBP2,IMMP1L,HSD17B10,SRRT,SSR2,ME3,RPS17,NDUFB10,TPRA1,LRMDA,IFITM10,NELFB,PRDX5,TNFRSF18,GEMIN8,BOLA3,SH3BGRL3,CFDP1,C15orf61,TMEM115,TXN2,MRPS26,HDDC3,PCSK1N,IRF3,TMEM161A,NPC2,SMIM1,IMP3,SERGEF,NDUFA13,CHCHD5,PERM1,C7orf50,NRF1,C1orf122,COQ8B,TMEM44,C16orf86,RRNAD1,GADD45GIP1,SNRPD2,ZSWIM7,SNF8,EIF6,SLC25A11,EIF3F,FZR1,ERH,MPDU1,RP11-523H20.5,REEP2,AGAP3,RPS26,DDX39A,TBC1D10C,ATAD3B,HAUS8,TTC1,SAMD10,ZNHIT2,GFUS,NDUFA4,MUTYH,BANF1,BCL7C,KRT8,DCAF8,OBSL1,MFSD10,SLC25A1,CD81,TMEM259,ARPC5L,TMEM9,FRA10AC1,RABGGTA,SRM,RPL27,COMMD5,PDZD11,CINP,PEDS1,LIN37,LST1,PYCR2,IFT27,AKT1S1,RECQL5,ZNHIT1,NARF,PHKG2,PMF1,SARS2,TIMM10,BUD31,ARHGAP4,ASB6,POLR2J,PPP1R16A,LRRC75B,SS18L2,SWSAP1,TBC1D17,SENP3,PTPMT1,RFXANK,FAM89B,ERCC2,RAB13,NT5C3B,CLN3,UBE2D4,POLR2I,PA2G4,CENPT,G6PC3,ZGLP1,IFITM3,EMP3,UROS,SHC2,CFAP410,SPPL3,PPP1CA,VAMP2,MRTO4,DMKN,LMTK3,DTNB,ANAPC7,LMF2,NUDT2,NUDT14,DBP,IQCD,LSM4,C1orf50,SNRPB,DNAJB2,APOM,RHOG,BEND5,C21orf58,CCDC102A,UFD1,SERPINB6,C20orf27,BIN1,C12orf43,COX17,OGFOD3,ATP5MJ,ARHGAP45,SAMD1,ARSA,ATP6V1F,RABAC1,AAAS,KPTN,RNASEH2B,UBL5,TXNDC17,RPS8,RPS11,GAMT,CNKSR1,GOLT1A,PLEKHJ1,CXXC1,ELMOD3,DYRK1B,C8orf82,PSMA4,TTLL1,STX5,OCIAD2,PARD6A,HAAO,TMEM129,GPATCH3,HSF1,ING4,NDUFB7,NSUN5,HAUS5,ELOC,RRP8,DGAT1,UBXN1,HDAC7,CLN6,ARVCF,RHOC,THYN1,MANF,RRAS,PRAF2,CKB,ZMYND19,PGGHG,PEX16,KLF16,TELO2,ETFB,FBXL6,TEDC1,TRAIP,ERP29,EPOP,EFHD2,LRRC29,AUP1,ANO9,FAM228B,STOML1,WASHC1,PDAP1,DEDD2,CHCHD10,TIGD1,NINJ1,PTMS,FUNDC1,RBM10,GPS2,PEMT,RPL36A,NDUFC1,COA8,PCBP4,THAP3,NOL12,VEGFB,ARMC7,MOSPD3,PCP2,CLASRP,OAZ1,ATOX1,PYCR3,CST3,STAC3,HMGN1,ANKRD16,TTC32,NDUFA8,MOB2,SPATA2L,GOLGA8B,SPATA20,COMMD6,COASY,SPATA33,EEF1D,GSS,RPS24,SMG9,ZNF18,TMA7,LMAN2,GOLGA8A,EMC9,PAM16,MACROD1,YBEY,CNFN,FLOT1,TCIRG1,POMZP3,SOX12,SPIRE2,SLC39A4,TPRKB,SPATA24,SORBS3,CARD19,POLR2E,RNPEPL1,KLHDC3,IER5L,NEDD8,PSMC5,DUSP28,NACA,BOLA1,PXMP2,ANP32A,TSR3,MVK,RPS19BP1,S100A11,SMIM4,HSD17B14,YPEL3,SAP30BP,THAP8,RNASEH2C,CIAO3,PLEKHO1,TMEM11,ADPRS,NSMCE1,GALK1,ATP5MC2,SIL1,C19orf18,TMEM238,GNL1,RNF5,CARD16,HOMER3,NDUFV3,DGCR6L,IFI35,PMPCA,SPSB2,REX1BD,CHMP4B,LRP5L,TFPT,SH3GLB2,HSD11B1L,FASTK,IFITM2,SIRT6,FXYD5,ZNRD2,ECH1,TMEM54,DXO,HSPB11,USP20,ANKRD13D,NR1H2,MRPL54,NFKBIE,CCDC57,TRAPPC2,FAM174C,SNRPB2,SIRT7 | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| Only predicted by TDF | | C14orf93,APITD1,CCDC88B,MVB12A,PSMB3,JMJD6,C4orf27,PDDC1,TBC1D10C,TNFSF12,CUEDC2,MED16,RBFA,XRCC1,UBA7,DGCR14,FAM73B,FKBPL,PIH1D1,PRDX5,HINT2,JTB,VAMP2,GADD45G,ANKRD54,FAM160B2,ZSWIM1,MANBAL,ARPC5L,SUGP1,PTCD1,HCFC1R1,MAP2K2,WDR74,FAM192A,UQCRH,NIT2,SLC25A38,GADD45GIP1,CAPNS1,AP4B1,TNFRSF25,PEMT,G6PC3,VPS72,CIR1,PTMS,CLPP,TSC22D4,HDHD3,MRPL52,WFDC2,VARS2,RBM10,ECHS1,NCLN,RBM42,C2orf68,CLTB,ADRM1,ATPIF1,BABAM1,LSM3,TRIM11,RPS23,THOP1,NFKBIB,SVBP,DTYMK,VPS37D,TIMM17B,HCST,CDC42EP5,BANF1,RNFT2,METTL1,CCDC130,ECI1,CLTA,C21orf59,NR2C2AP,CBY1,RBM6,LHPP,RPS27,UBL7,ANKRD39,VPS4A,POLRMT,METTL12,RWDD1,TCF25,CCDC53,BCAT2,PSMB1,ING4,IL3RA,BBC3,LRRC27,NFU1,C14orf79,NDUFA1,SSR2,RAB34,EHMT2,CCDC94,PSMA2,YIF1B,CCDC137,C19orf18,NDUFS5,RRP7A,SGTA,TFPT,DAPK3,MRPL47,DPH7,CENPB,ATP6V1F,PEX16,PEX11G,CCDC167,PGLS,FAM110A,TNFAIP8L2,CBLC,CENPM,MZT2B,COX6A1,ALKBH4,PTTG1,TMEM134,TIMM22,C14orf2,CEBPZOS,CARD16,MARCH9,PPCDC,NT5M,NAA10,RPL35,SLC27A1,FZR1,SSSCA1,ZFAND2A,OTUD5,NDUFA13,DMPK,EMP3,LMBR1L,IGFLR1,PSMB6,ZNHIT2,AIP,THAP7,CDC34,NOL3,ENGASE,INO80C,FAM127B,RAC1,OGFOD3,THOC6,SCNM1,S100A13,COA6,CYTH2,COMMD3,VPS25,WDR13,MZT2A,SGF29,STK32C,TK1,CCDC174,HAUS5,ENDOG,GPX4,CCND3,FAM32A,DYNLRB1,GTF3C6,SNRPC,GLTSCR2,ATRAID,PRR7,SHFM1,VPS28,COX17,COX14,SLC25A14,FAM71E1,PTDSS2,COX8A,RNF126,FAM98C,IDH3B,FAM195B,ABHD14B,NUDT22,PSMB7,POMT1,TTC1,UBA52,UXT,KRT18,SH3GL1,KLHL22,SPATA24,NR2F6,C11orf74,C9orf114,C2orf81,AP1G2,BEND5,B4GALT7,TMEM120B,PRR14,CMTM7,KPTN,ANAPC15,RTN2,FUZ,DDIT3,CIRBP,KIAA2013,DHRS3,PITHD1,PQBP1,JOSD2,HIP1R,TUSC2,MIIP,C3orf62,TIMM10,P3H4,TMEM44,CORO1B,CPNE1,RTKN,LAGE3,MACROD1,MLF2,SYMPK,UQCC2,THOC7,DNAJC8,SLC25A11,DCAF8,NDUFA2,YDJC,TBL3,ECSCR,ZNF18,COMTD1,DHPS,RABL6,SNRPB,PFDN4,TMEM91,GNB2,CSTB,TMEM9,KLHDC4,SPC24,DYRK4,GPAA1,ICT1,GFER,NDUFB1,VAMP8,COX7B,TMEM161A,LSM2,RAD9A,UBALD2,TMEM88,ABHD12,NENF,ACCS,ZSWIM7,SAT2,KLHDC9,C19orf25,SMG9,C8orf76,ZMYND19,DGAT1,VMO1,KAT2A,TXNL4A,NFKBID,VAMP5,NSMCE1,STAC3,THAP3,LUC7L,LAMTOR4,C6orf203,B9D2,HSCB,CPSF1,CWC15,BCL7B,ARIH2OS,NUDT1,UBOX5,REEP2,GUK1,ABHD11,OXLD1,PMF1-BGLAP,BST2,SORBS3,METTL17,LSM10,EBPL,DOHH,C7orf50,DNAJC4,CCDC22,GEMIN8,INPP5K,RNASEH2B,RPSA,NDUFA3,PAF1,CITED4,SYNGR2,YJEFN3,TRMT112,USMG5,FAM167B,DTNBP1,NUDC,PMF1,C21orf58,NUPR1,HHLA3,RNF113A,SART1,OVOL2,GPATCH3,SH3GLB2,EIF3G,USF2,TWF2,EIF3F,MYL5,EBP,NDUFB11,TBKBP1,NT5C,LEMD2,FAM234A,PKIG,POLR2J,TRADD,ATP5I,COX4I2,FKBP8,TAZ,SERTAD1,ROGDI,UBXN1,COX7C,SNTA1,NOSIP,UBXN6,SRP14,CLASRP,PSMD4,CXXC1,QTRT1,PCSK1N,PTS,C8orf82,B3GALT4,FBXL8,IFI27L1,C12orf45,POP5,SLC25A10,NMRAL1,C11orf49,KCTD2,NPDC1,TNIP2,C20orf196,RAB25,BAX,PARK7,PSMB4,C19orf44,PPP2R1A,ZNRF1,EVL,ITPA,CNFN,CEP89,FBXW9,OCEL1,RRNAD1,SURF1,PBX4,GGA1,TRIOBP,APOM,TSTA3,PPP1R12C,ALKBH2,NDUFA8,NDUFA6,CNPY3,DTX2,ALDH16A1,C11orf98,COQ10A,LPAR2,CFAP36,GSTP1,ELOF1,ZER1,SFXN4,RSAD1,ATP5D,TMEM160,MRPL27,MRPL24,ARHGAP4,AURKAIP1,GAMT,KRT8,PRR13,H2AFX,HIGD1B,RPL23A,ZNF48,HSF4,ALG1L,DERL2,PPP1CA | | Exist in public source | | NA |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| Only predicted by TDF | | KDELC2,MKRN2,WAC,FRMD4B,ANKRD46,CASC4,CRYL1,CD93,COX18,UTP20,ANKRD40,SLC25A44,KLHL9,DHDDS,EP300,FECH,AP5M1,PELO,BCKDHB,TCAF1,CD2AP,DHX33,MEF2D,EVI5,RAPGEF1,CANX,OTUD6B,PIGK,NEK1,EXOC5,WNK1,ATP2A2,ANTXR1,KCTD3,MED1,TERF1,TJP1,NXT2,LIG4,PCYT1A,TNKS2,CDK4,WDR7,ATL3,KIAA1671,TUBGCP4,WSB2,APP,ARL13B,SMPD4,METTL2A,NPEPPS,IRF2BPL,SLK,ERAP1,DIEXF,GGCX,ITPRIPL2,AGO4,INPP4A,ZC3H11A,MFN1,PIK3R4,COG6,MARS2,LYPLA1,XIAP,TNFRSF10A,AP3M1,RASSF8,AKAP11,DDX24,ARMC1,ICE2,WDR35,LPIN2,DPH2,TOR1AIP1,ARHGAP5,CSDE1,TRIM25,PATL1,PPP4R3B,ATP1A1,PRRC2B,SRFBP1,DDX1,RAB23,AMBRA1,ACLY,PPP2R2A,PIK3CB,RPAP3,MYO1D,CERS6,SLC39A10,DDI2,C7orf49,RABL3,PGAP1,SIK2,CLCN3,RCHY1,MYOF,CD302,KPNA6,EIF4G2,SPPL2A,ERMAP,SEC31A,TUBGCP3,TMEM131,FAM120B,TOPBP1,YEATS2,ULBP3,EYA3,NFX1,ADAM10,ITPR3,STAM,TAF1A,WAPL,KPNA3,UFSP2,KAT2B,MFSD8,TGFBRAP1,UBR5,FRRS1,ASAH1,ELMO2,FOXJ3,WDR43,CHUK,DPYD,SLC9A6,ABHD16A,ZYG11B,ATXN1L,EPS8,RAB6A,BRCC3,NHLRC3,FAM73A,BRWD3,CKAP2,IFIH1,IPO8,NOL6,EPRS,UBR2,FAM114A2,H6PD,YME1L1,TPM4,BCL9,PPP6R1,PMS2,RAB10,HBS1L,PTPN12,USP28,CLASP1,VTA1,COPA,TEP1,CNOT7,AKAP1,CCT6A,METTL8,CDC23,NAA35,OSBPL11,EAF1,NLN,BRPF3,CHD8,TIRAP,MARK2,PRKAA1,FOXJ2,RBM4,GNA13,CLTC,NUP98,JOSD1,LRP1,MECP2,SMARCA5,TIFA,STK3,PTPRF,KIF16B,GTF3C2,HAUS6,USP32,CTTNBP2NL,DDX52,PCMT1,PROSER1,XYLT1,UBXN7,GCLC,NUS1,SLC44A1,CTSO,INTS3,RHOBTB3,MCCC2,SBNO2,TBC1D9B,RASAL2,ERCC4,MYO5B,SKIV2L2,USP10,EXD2,KLHL8,SPICE1,DNAJC16,TMED5,DHX15,LANCL1,CDK13,SH3GLB1,MED21,TINF2,OSBPL8,RCBTB1,SRP72,ERCC3,CTDSP2,NUDT12,KIDINS220,FAM102B,RP2,SPTLC1,TOP2B,REST,AGL,ABCB10,GALNT11,PTP4A1,RNF19B,IMPA1,TRIM44,ATP2C1,ATP2B1,ARF6,PPP2R5C,EXOC6B,MINA,SLC4A7,ELMSAN1,SEC23IP,ARMCX5,TMEM183A,ACBD3,CTNNB1,PFAS,ZFAND1,IQCB1,FAM45A,MLLT10,GLYR1,TLK1,FNDC3B,SNX7,SETX,KIAA0319L,HPS5,THAP6,OTUD4,UBA2,GTF2I,CEPT1,SIPA1L3,FOXK1,SLC35A3,HSPG2,ARL5A,USP42,ERC1,KDM5A,PAFAH1B1,FAM104A,CTR9,SETD7,INCENP,TMBIM6,GCN1,LACTB,IPPK,NUMB,SH3D19,PJA2,MAT2B,DDX60,C17orf80,PTPRA,ASCC1,INO80D,PHACTR4,NSUN4,SERINC5,NIPA2,USP6NL,CSNK1A1,KIF5B,TMEM135,SGTB,SUCLG2,XPC,BAZ1B,TIMELESS,PTPRG,NMNAT1,VPS37A,CBX5,RWDD4,RLIM,CCNY,SOWAHB,DNAAF2,ERLIN2,ZNHIT6,LEMD3,ACACA,ZFYVE9,SLC33A1,GBE1,GTPBP10,MAPRE1,SRRM2,RNF168,GNG10,SENP2,TRIM2,UHRF1BP1L,TAF1B,HHAT,RIF1,CCT2,GPN3,FAM160A1,SCRN3,TCEA1,ERGIC2,GTF2H1,TLR4,SUZ12,FAM35A,LZIC,PDLIM5,RAB3GAP2,MFSD9,UTRN,EML1,MR1,PTPRK,CMPK1,C18orf25,FLII,ENTPD5,NOC3L,BAZ2A,SMARCA2,FAN1,CASP8AP2,ZNF106,RINT1,DIP2B,SNX27,LDOC1L,CDK17,STAT3,ENPP4,SLC30A7,DSTYK,SNX4,FOCAD,HERC4,ZFYVE26,PLAA,KAT5,PTPN9,CSNK2A1,FBXL18,MYO1E,PRDX3,PRKD3,ALKBH1,ARL6IP5,TPP1,FAM126B,MIOS,TM9SF4,MAN2B2,SRPK2,IKBKG,ENTPD7,SEC22B,SPAG9,OGDH,LATS2,SOCS5,VPS35,BMS1,NANP,TJP2,LPCAT3,XPO4,NUDCD1,TMED2,PITPNA,FER,NCK1,HERC2,ADH5,EIF2S3,KIAA1429,CHD9,HSPA4L,DHX29,SLC4A1AP,NAPEPLD,PSMC6,ZHX2,CPSF2,STAU1,ISG20L2,TRIO,LARS,UBE2G1,NBPF3,MPHOSPH9,FAM210A,PRRG1,LIMD1,ITPR2,ELF1,CCDC6,URB1,CEP120,CLIC4,DSP,PRIM1,DHX9,PI4KA,TMEM123,HACD2,MUL1,SEC24B,FYCO1,SMAD1,SLC23A2,UBAP2L,IQGAP2,CLCN4,FRS2,DLST,PPM1A,ZNF720,TAF2,RNFT1,ETFA,USP4,RSPRY1,CDYL,RBBP8,SF3B1,HEATR6,RFWD3,ABHD18,ZCCHC6,PDP2,SPTY2D1,RAD17,SLC25A24,KLHL11,IBA57,TWF1,TOR1B,DDX31,NDFIP2,FKTN,HECTD4,DHTKD1,ZCCHC11,PEAK1,NEK4,CSNK1G3,ELL2,DCAF7,SF3A1,MID2,SLC12A6,NBAS,LRRC41,PPID,ITCH,UBQLN2,ACTN4,RIN2,RORA,FBXO11,PUS7,SACM1L,KDM1B,ITGA4,NEK7,MPDZ,TCP11L1,PAPD5,SCFD2,MAU2,DNMT1,SIKE1,NRAS,CSGALNACT2,MAML2,NSMAF,MAPK1IP1L,LMTK2,ZZEF1,FASTKD5,RAB4A,RANBP2,NMD3,FAM175B,IPP,CCNT1,VPRBP,RFC3,FOSL2,FITM2,POC1B,KIAA0355,DCTN1,LIMS1,PSMD1,TANGO6,ATF1,FUBP1,YLPM1,MRPS27,CCSER2,DNM2,ANKRD13C,CALCOCO2,UHRF1BP1,VKORC1L1,CCT5,XPR1,TMEM263,SSH1,LRRC57,MFAP3,METTL13,MARCH8,OS9,PRMT9,MOB1B,SLC41A2,YWHAB,GANC,ATXN7L3B,PDP1,APPL1,SCO1,PCNT,MINK1,DCLRE1B,IARS2,SPRED2,METTL6,COMMD2,TRIM23,CEP63,GEMIN5,HAUS2,ACOX1,WDR48,CRKL,MBLAC2,ADAT1,JMJD1C,ZC3H15,SPG20,KIAA1551,ATAD1,KDR,BRD2,GNE,CAT,AGO1,KIF2A,DBR1,TBC1D2B,CTDSPL2,DDX46,ZFP30,PDCL,GFM2,SNX1,ABHD13,PCM1,VPS8,ZBED6,UEVLD,BCL2L13,TPM3,G3BP2,PARP4,TXNRD1,ZBTB6,MCM3AP,TASP1,NCAPD3,AMOT,TYW1,KLHL28,CAB39,SMG1,NCOA6,CDK12,LONP2,BPTF,RPAP1,TBP,TNS1,MFSD11,MOB1A,RAP2C,BACH1,KLHL7,PIK3C3,C12orf66,FAM179B,MCMBP,AKTIP,GOLPH3,LAP3,ZNF45,CDKN1B,ATP9B,TRAPPC10,PPP2R1B,GMCL1,GAPVD1,ARFGEF2,RALGAPA1,SBDS,CNOT6,ATP10D,KDM4A,STX11,DENND5A,RB1,LYRM2,CDKN2AIP,ARMCX6,COIL,VPS13C,ORC2,SDAD1,KIF3B,BNIP2,CBL,RNF185,PDXDC1,RAB3GAP1,RFK,SEC24D,C12orf49,TMEM87A,C5orf51,UPRT,FBXL3,SARAF,ANKRD52,NUP160,NARS,GLG1,TUBA1C,NUMA1,DNASE1L1,CAD,GIT2,NID2,POLR3A,ARIH2,PCCB,MRPS10,TMCC1,IPO5,CLPX,PSMD5,RPL7L1,EPS15L1 | | Exist in public source | | NA |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | SPICE1,ZNF79,IDH3A,ERGIC2,NEK4,CMTM4,TCP1,RPRD2,PSMD2,MYO6,HEATR1,MNT,CUL1,AP5M1,ARID1A,ANTXR1,MARCHF6,UPRT,RNF123,ATM,MAP4K3,BECN1,RDX,SBNO2,TOR1B,TCF20,CCNC,TNPO3,QSER1,PPP1R12A,GNL3L,ATG3,UBE2A,SNW1,TPM3,TMEM161B,ACVR1B,EPS15L1,KIAA1109,CAD,RIOK3,TBC1D15,EDEM1,ITPR2,EIF4G1,TUBA1C,PTK2,RAB7A,FCHO2,CREBBP,HTT,PBX1,PBRM1,SRRM2,TRAK1,SCRN1,ANKRD28,CAMK2D,PSMC1,HEATR6,NADK,SRP72,UBAP2,ELOA,SACM1L,MAN1A2,OSGIN2,GMPS,L2HGDH,SSRP1,NECAP1,PRRC2C,SUMF2,QRSL1,SYNE2,SNX19,VPS35L,PDPK1,ACBD5,ARFIP1,CEP120,PAK2,NOL8,TRAK2,LONP2,CDK4,ARID1B,STRN,MAFG,CCDC32,SLFN5,CALD1,EPS8,GOLIM4,RPRD1B,TTC3,LRP10,KIDINS220,CYLD,CDC27,ABRAXAS1,REPS1,ZHX3,TMCO3,SMARCC1,ACOX1,RNF31,PITRM1,KCTD5,DDX59,FBXO11,UNC13B,NGLY1,EID1,DDX6,GANAB,SEC23A,MINK1,JKAMP,CNOT7,MKLN1,ARHGEF9,ATP5PB,MFSD11,TXNRD1,ITSN2,MIOS,RNF38,MTMR12,RNF13,PSME3,CCDC85C,CASTOR2,RAB35,SUGP2,PIGG,RB1CC1,KLF13,SMAD1,KIF21A,CLSPN,TM9SF1,AGFG1,LPCAT3,NBAS,SNX25,GPD2,TM7SF3,CLCN7,ZFAND3,HSPA9,MDC1,IPO8,UBE4B,TP53BP2,NDST1,TAB2,POC1B,YAP1,IDE,FOXN3,MAIP1,FBXO9,TRA2B,PROSER3,UVRAG,MARCHF7,OSBPL8,RNF145,PEX5,DDX5,LDLR,PACRGL,KAT7,MTRR,UBAP2L,SELENOT,AZI2,KDM2A,ACTR2,DCAF7,VAMP7,EEF2,PTPRM,GPATCH8,RBM7,SFMBT1,CNOT8,ALMS1,ABL2,SNN,MRPL49,NSF,ACTR8,SEC23B,FASTKD2,MED1,NUP58,GOSR2,CNST,PPFIBP1,EIF4G2,CD46,GID4,CDK13,CDC23,CLASP1,NIN,CUL2,NAA50,GON4L,PLEKHA7,CAB39,HUWE1,MCUR1,PRKAR1A,SLC25A40,PLIN3,TEP1,ZFAND6,GEMIN5,KCTD9,GOLGB1,FARP1,YME1L1,RRAGB,ATL1,BCL2L11,SLC25A17,LPP,DCAF5,FBXO3,TLK1,CPD,WDTC1,FAM13B,SPIDR,MED23,GTPBP8,ZFP30,BTD,DHX35,NOTCH2,UGDH,ICE2,DPP8,GABARAPL1,SUCO,FNDC3B,ATF1,CROT,NDE1,ARHGAP32,RANBP10,ADAT1,BCKDHB,RPRD1A,FYCO1,SPOPL,POLG,HMGCR,RAP1GDS1,LEO1,NOMO2,RAPGEF1,CLIP4,PARP1,TMEM87B,FAM168B,PHF6,SMYD4,DHTKD1,FAM53C,SINHCAF,DLST,USP4,ARHGEF3,APPL2,SLC36A1,XPO7,VPS4B,ADCY7,SNX12,NEPRO,PMM2,CHP1,POGLUT3,FRS2,KHNYN,SIPA1L1,TOM1L1,FAM104A,SCP2,DNM2,FOXJ3,AGPAT5,LARP1,UBXN7,EDC4,EHBP1,NPEPPS,GBA,CTBS,GMPR2,UQCRC2,MPPE1,WIZ,ACTN1,STARD13,RCHY1,RNF214,BZW1,DCTN4,ZFAND1,SCOC,SMG7,SLAIN2,PPP6R1,TUT4,PKN2,MSH3,CANT1,FOXK1,TASOR,NDEL1,ACSL1,GTF2H1,PUM1,OS9,MAN2A2,TJP2,SEC24B,SUSD1,CRACD,RABL3,SFT2D2,GLB1,FLII,CPOX,KCTD10,FAM91A1,WDR37,KMT2D,HIGD1A,CTNNB1,BCL2L13,SMARCA1,FUBP1,EXOC7,PKD2,AP3D1,ANAPC1,MON2,FBXO21,MAPK14,RNF111,TP53BP1,VPS37A,HSPA4,SSR3,PPIP5K2,USP32,ZDHHC5,MANBA,MAPKAP1,TTLL5,RASSF8,LLGL1,USP34,DHX38,VPS13D,WBP11,MORF4L1,FERMT2,ITPR3,FBXL18,CLPB,SLC25A24,DNMT1,TRPM7,RIOK2,PRMT5,TCEA1,TMEM43,SRP54,ADCY9,CASK,DDX3X,ALG10B,PUM3,IPO5,MAP3K20,ASXL2,CDKN1B,PHF8,RAF1,ALAS1,TARS1,POLR2B,FRYL,RHOBTB3,BAZ2A,IMPA1,CEP350,LZTFL1,HIPK2,PIKFYVE,BLZF1,R3HDM1,DDHD2,RPL7L1,ACVR1,MYOF,DET1,TMEM263,TPM4,HSPG2,EIF3C,SFXN1,SLC35A5,MAP3K3,RAB18,SLC10A7,DENND4A,TRIM4,GNPTAB,URI1,CFL2,METTL6,LIG3,MED13,VPS50,RAP1B,USP19,WDR7,GALK2,USP46,DHX33,SIPA1L3,SMG6,INVS,KIAA0232,WDR20,CYREN,SKI,NUP98,PXK,KIAA0586,DNAJC24,DDX60,USP24,ST13,TAF6,ZCCHC14,GLE1,MTFR1,TRIP12,AKT3,PSMD5,TM9SF4,GTF2A1,NPC1,CHD2,TFIP11,ALDH5A1,PRKAA1,GGCX,NEO1,SOS1,FLNB,DYNC1LI1,IQCK,TUBGCP3,ABI2,ATP1A1,GOSR1,PPP3CB,AGK,CTNNA1,ELF1,OSBPL1A,CLINT1,PIGO,CITED2,BCL10,RPE,ERLEC1,TAF2,GCC2,CHD6,CAST,TEX2,PLAA,COX18,AKAP1,TEX261,FOCAD,MED21,PIP5K1A,HEATR5A,FEM1B,AMBRA1,RUSF1,TNFRSF10A,C2orf49,PEX10,TMBIM6,SH3GLB1,MPRIP,DPH2,ATXN10,NEMF,MLH1,CTDSP2,UBXN8,DOCK1,NCOR1,ZFYVE9,EMC1,WSB2,TAF5L,SCAF11,USP37,SLC25A51,CNOT1,ARL6IP5,TMEM170A,DSTYK,NF1,CAMSAP2,MBP,RBBP4,TRAP1,MYO1D,RMDN3,ITSN1,UBAP1,MYH9,ZC3H7A,HERC2,USP15,SLC11A2,TTC27,SERINC5,EIF4G3,ZNF839,RAD1,DNAJC16,ATXN1L,FAM83B,SECISBP2L,UBR1,VPS41,DAG1,SEPTIN10,KLHL36,CHD8,NOP9,ACTR3,SBDS,TAOK3,PCDHGC3,IL1R1,MED14,MEF2D,STAMBP,KAT5,SLC37A3,DEPDC5,KIAA0100,PRDM2,ARPP19,ARHGAP21,IARS1,UBE4A,RAB5A,AMOT,GDI2,CDV3,ERBIN,DNAJC14,CCDC126,PHACTR2,FAT1,DCUN1D1,MTMR4,INTS3,ATL2,CAP1,MKRN1,ANKRD11,ITPRIPL2,COBLL1,PDHX,CERS2,ZC3H11A,WASF2,C12orf66,VGLL4,NAPEPLD,DHX8,CEP63,NBR1,THTPA,GCLM,RIC1,NUMB,ABCF2,VTI1A,KDM5B,DCAF6,KTN1,RPTOR,MCCC2,C5orf24,ETFA,ATP2C1,AFDN,CCNY,RORA,ILK,ATXN2L,RRN3,HEG1,FARP2,AP2A1,UBE2D3,RBM4,DOCK7,DKC1,LRCH4,AKTIP,CYP51A1,SEPTIN11,KIF13A,ELK1,DAZAP2,RFFL,CLIP1,SART3,CORO1C,ARNT,FAM219B,USP48,RAI1,KIAA0319L,ASB7,ATF2,MAML2,DCAF11,RC3H2,SNAP23,FBXO7,AGPAT3,BCL2L2,XPO1,TMEM185B,PRR14L,POT1,AP2B1,RNF169,TRIM35,PRIM1,CNIH1,USP42,METTL2A,TBC1D2B,RAB11FIP1,RAB5C,EYA3,ACTR10,ELL2,URB1,SEL1L3,BRCC3,MBD1,USP9X,ROCK2,ZBED6,RHBDD1,C1orf109,ZC3H18,METTL8,UEVLD,DESI2,KDM5C,ATG7,MTMR1,HSPA14,TNS1,MFSD1,MTO1,DDR2,MYO1E,WNK1,BRPF1,NONO,SLC35A2,SSH1,LYRM2,SUN2,WIPI1,MAN2B1,GPHN,CHURC1,RBM41,PFAS,TMLHE,KLHL5,EPS15,LYSMD3,TIRAP,GOLGA2,RPN2,CCNG1,PEX19,PPARA,FICD,NID2,AMD1,HYOU1,GALC,RABGAP1,SNX2,PPP2R5C,KIF2A,OGDH,REST,EIF3L,PLS1,RAB3D,EMSY,SOS2,HAUS4,LARS2,PCYT1A,JOSD1,BACE1,POLK,RANBP2,ACTN4,PPP2R1B,DCAF17,PLEKHF2,IL6ST,DYRK1A,LARS1,BLOC1S6,MECP2,AFF1,CARM1,ABCE1,OSMR,HCCS,MRTFB,CBLL1,USP8,PICALM,ABHD16A,FAM114A2,GCLC,SNX18,ITFG1,UTP23,ABCD3,USP14,RAD54L2,AIMP2,ECD,CPSF2,CMTR1,NIF3L1,SPG11,FAM172A,FIGNL1,INPP4A,ASNSD1,MAN2B2,RALGAPA1,IBTK,FER,USP38,TANK,PALLD,MARK2,ATL3,RAB6A,CMIP,TNS3,INTS7,GSK3B,TUBA1B,TULP4,VPS26C,GTF3C2,TAX1BP1,DENND4C,AEBP2,LRRFIP1,CEP170,RNF4,NT5C2,ZMYND11,HIPK1,RNF40,LIMS1,QTRT2,CDKL5,SNX6,NOP14,SPIRE1,EPB41,ANGEL1,PSEN1,PI4KA,LATS2,ANKRD46,RRM1,INTS14,CEP104,HBS1L,TRIM37,INTS6,GORASP1,NOL11,WDR36,SCYL2,MCM3AP,MID2,PLEKHB2,AMN1,SYNJ2,ZNF17,POLR2A,GPN1,KCTD3,ANKFY1,CTH,NR2C2,FSTL1,AHCYL2,SCFD2,CLTC,ATRN,AP1AR,GLG1,CIC,FRMD6,PARG,ALG12,SDHC,ATP2A2,PIK3C3,BIRC2,PTPRG,RAB31,HSPA8,M6PR,PTPN12,SNX29,ABCB7,APAF1,CEP20,BBS2,BBX,CDYL,ASCC1,KLHL7,PCNX1,TPP1,ERLIN2,C17orf80,SLC7A6OS,DDI2,PACSIN2,DMXL2,VIRMA,UBR4,HSPA4L,ZNF720,RAB29,TSPAN31,IQGAP1,POLR3A,SMARCA2,SMPD4,SLMAP,SESTD1,CMTR2,CIPC,SDCBP,SNTB2,WDR61,ASPH,STRAP,EML1,MEX3D,LYPLA1,UTP15,FPGT,SLC25A25,RFX5,PCNT,ARHGAP5,BCLAF1,CLCC1,NKIRAS1,MPDZ,HELQ,MCC,PTDSS1,NBPF3,PPP1CB,THAP6,CSNK2A1,IKBKG,ILRUN,KDM1B,UBN1,COPB2,CLCN4,ALDH6A1,STIM1,SEC14L1,SAMD4A,NOA1,SETD5,SF3B1,ADD1,NIPA2,ESYT1,ARSB,ZFYVE1,PDLIM5,KIF13B,PCM1,CCT2,DYNC1LI2,C19orf71,KBTBD4,VEZT,MIDEAS,ZNF106,PEX26,APP,RASA1,STT3A,STARD3NL,CERT1,SLC9B2,POLR3E,PTPN9,PTPRF,PDK2,PUM2,SENP6,CRYL1,MBTPS1,PCMT1,SF3A1,PHC3,SEPTIN2,GOLGA5,MYO10,COG6,DDB1,SIK3,BCL9L,ABHD5,RSRC1,FAM118B,TTI2,TAF1B,PSMD10,DOCK9,TBC1D23,SBF2,ITGA6,OGFOD1,ATP9B,ERC1,TNPO1,PAIP2,DHDDS,PGM3,NEK7,UTP18,TSN,SEC22C,RO60,MAPK9,CSNK1G3,HEATR5B,BIRC6,ACADM,PPM1A,SEC31A,CALCOCO1,TBC1D9B,CYFIP1,SWT1,RTN4,IPP,RAD17,BCOR,DENND5A,SYNRG,EVC,TCP11L2,TMEM135,VPS39,ZC3HAV1L,CALCOCO2,MRPS27,ARPC2,WWC2,MIA3,ABHD18,KIAA1191,DLG1,AFAP1,PHRF1,MCFD2,TRAF7,NDUFS1,SLC39A6,MPHOSPH9 | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | | ENSG00000258199 | ENST00000553176 | exon_skip_317671 | chr19:35907729-35907762 | -10.52 | -0.4046 | TYROBP | ENST00000262629 | In-frame |
| -lncRNA and exonskipping events are negatively correlated. |
 |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000258199 | ENST00000553176 | exon_skip_291984 | chr17:59119318-59119495 | -11.93 | -0.1125 | SKA2 | ENST00000330137 | In-frame | | ENSG00000258199 | ENST00000553176 | exon_skip_445390 | chr5:150403120-150403312 | -21.48 | -0.1256 | CD74 | ENST00000009530 | In-frame | | ENSG00000258199 | ENST00000553176 | exon_skip_291980 | chr17:59119318-59119495 | -11.93 | -0.1125 | SKA2 | ENST00000330137 | In-frame | | ENSG00000258199 | ENST00000553176 | exon_skip_382458 | chr3:38131595-38131638 | -7.70 | -0.1878 | ACAA1 | ENST00000333167 | Frame-shift | | ENSG00000258199 | ENST00000553176 | exon_skip_514339 | chrX:23713134-23713208 | -7.09 | -0.1313 | ACOT9 | ENST00000336430 | Frame-shift | | ENSG00000258199 | ENST00000553176 | exon_skip_7523 | chr1:78660553-78660654 | -10.98 | -0.1168 | IFI44 | ENST00000370747 | Frame-shift | | ENSG00000258199 | ENST00000553176 | exon_skip_9446 | chr1:147270931-147271005 | -7.57 | -0.1376 | CHD1L | ENST00000369258 | Frame-shift | | ENSG00000258199 | ENST00000553176 | exon_skip_29583 | chr1:114780109-114780215 | -10.33 | -0.1076 | SIKE1 | ENST00000060969 | Frame-shift | | ENSG00000258199 | ENST00000553176 | exon_skip_41813 | chr10:68337857-68337996 | -16.23 | -0.1576 | HNRNPH3 | ENST00000265866 | Frame-shift | | ENSG00000258199 | ENST00000553176 | exon_skip_41841 | chr10:68756272-68756483 | -18.73 | -0.1058 | CCAR1 | ENST00000265872 | Frame-shift | | ENSG00000258199 | ENST00000553176 | exon_skip_53559 | chr10:101793912-101793998 | -10.35 | -0.1848 | OGA | ENST00000361464 | Frame-shift | | ENSG00000258199 | ENST00000553176 | exon_skip_62623 | chr11:69079833-69079883 | -6.62 | -0.2546 | TPCN2 | ENST00000294309 | Frame-shift | | ENSG00000258199 | ENST00000553176 | exon_skip_66482 | chr11:126274926-126275021 | -10.42 | -0.1427 | FOXRED1 | ENST00000263578 | Frame-shift | | ENSG00000258199 | ENST00000553176 | exon_skip_74009 | chr11:64773429-64773505 | -12.77 | -0.1680 | SF1 | ENST00000377390 | Frame-shift | | ENSG00000258199 | ENST00000553176 | exon_skip_76344 | chr11:83278725-83278829 | -9.09 | -0.1181 | CCDC90B | ENST00000529689 | Frame-shift | | ENSG00000258199 | ENST00000553176 | exon_skip_87733 | chr12:120571190-120571291 | -14.08 | -0.1600 | RNF10 | ENST00000325954 | Frame-shift | | ENSG00000258199 | ENST00000553176 | exon_skip_95407 | chr12:95040475-95040597 | -12.71 | -0.1135 | NR2C1 | ENST00000333003 | Frame-shift | | ENSG00000258199 | ENST00000553176 | exon_skip_95500 | chr12:96003837-96003920 | -8.05 | -0.2300 | LTA4H | ENST00000228740 | Frame-shift | | ENSG00000258199 | ENST00000553176 | exon_skip_111863 | chr14:23565815-23565892 | -10.97 | -0.3783 | AP1G2 | ENST00000308724,ENST00000397120 | Frame-shift | | ENSG00000258199 | ENST00000553176 | exon_skip_114365 | chr14:74290026-74290118 | -12.55 | -0.1569 | ABCD4 | ENST00000356924 | Frame-shift | | ENSG00000258199 | ENST00000553176 | exon_skip_114376 | chr14:74293153-74293248 | -16.18 | -0.1860 | ABCD4 | ENST00000356924 | Frame-shift | | ENSG00000258199 | ENST00000553176 | exon_skip_292904 | chr17:69251746-69251866 | -16.03 | -0.2137 | ABCA5 | ENST00000392676,ENST00000588877 | In-frame | | ENSG00000258199 | ENST00000553176 | exon_skip_296625 | chr18:42057882-42058051 | -17.16 | -0.1253 | PIK3C3 | ENST00000262039 | Frame-shift | | ENSG00000258199 | ENST00000553176 | exon_skip_302168 | chr19:10680345-10680443 | -8.41 | -0.1038 | ILF3 | ENST00000590261 | Frame-shift | | ENSG00000258199 | ENST00000553176 | exon_skip_313557 | chr19:5786748-5786845 | -15.97 | -0.1879 | DUS3L | ENST00000309061 | Frame-shift | | ENSG00000258199 | ENST00000553176 | exon_skip_319223 | chr19:43526200-43526349 | -17.62 | -0.1286 | ETHE1 | ENST00000292147 | Frame-shift | | ENSG00000258199 | ENST00000553176 | exon_skip_319443 | chr19:45165126-45165194 | -12.31 | -0.2052 | TRAPPC6A | ENST00000585934 | Frame-shift | | ENSG00000258199 | ENST00000553176 | exon_skip_326741 | chr2:73946718-73946906 | -17.60 | -0.1023 | DGUOK | ENST00000264093 | Frame-shift | | ENSG00000258199 | ENST00000553176 | exon_skip_327433 | chr2:86125794-86125880 | -8.29 | -0.1151 | PTCD3 | ENST00000254630 | Frame-shift | | ENSG00000258199 | ENST00000553176 | exon_skip_335558 | chr2:240596680-240596942 | -28.45 | -0.1305 | CAPN10 | ENST00000391984 | Frame-shift | | ENSG00000258199 | ENST00000553176 | exon_skip_344202 | chr2:159248371-159248512 | -14.08 | -0.1013 | WDSUB1 | ENST00000358147,ENST00000359774,ENST00000392796,ENST00000409990 | In-frame | | ENSG00000258199 | ENST00000553176 | exon_skip_353131 | chr20:58669290-58669453 | -27.85 | -0.2063 | STX16 | ENST00000371141 | Frame-shift | | ENSG00000258199 | ENST00000553176 | exon_skip_358821 | chr20:63943652-63943669 | -5.42 | -1.0840 | UCKL1 | ENST00000354216 | Frame-shift | | ENSG00000258199 | ENST00000553176 | exon_skip_363747 | chr22:23877720-23877869 | -20.21 | -0.1375 | SLC2A11 | ENST00000345044 | Frame-shift | | ENSG00000258199 | ENST00000553176 | exon_skip_370518 | chr22:50247691-50247776 | -11.98 | -0.1479 | HDAC10 | ENST00000216271 | Frame-shift | | ENSG00000258199 | ENST00000553176 | exon_skip_374375 | chr3:49675182-49675309 | -17.76 | -0.1644 | APEH | ENST00000296456 | Frame-shift | | ENSG00000258199 | ENST00000553176 | exon_skip_374497 | chr3:49999439-49999513 | -11.40 | -0.2000 | RBM6 | ENST00000266022 | Frame-shift | | ENSG00000258199 | ENST00000553176 | exon_skip_374551 | chr3:50100531-50100605 | -8.78 | -0.1291 | RBM5 | ENST00000347869 | Frame-shift | | ENSG00000258199 | ENST00000553176 | exon_skip_387016 | chr3:121788283-121788432 | -13.88 | -0.1028 | IQCB1 | ENST00000310864 | Frame-shift | | ENSG00000258199 | ENST00000553176 | exon_skip_436035 | chr5:79656957-79657001 | -15.95 | -0.5500 | TENT2 | ENST00000296783,ENST00000428308,ENST00000453514 | Frame-shift | | ENSG00000258199 | ENST00000553176 | exon_skip_438307 | chr5:141974803-141974955 | -14.03 | -0.1063 | RNF14 | ENST00000347642,ENST00000356143,ENST00000394519,ENST00000394520 | Frame-shift | | ENSG00000258199 | ENST00000553176 | exon_skip_442657 | chr5:74730259-74730398 | -12.67 | -0.1014 | GFM2 | ENST00000296805,ENST00000509430 | Frame-shift | | ENSG00000258199 | ENST00000553176 | exon_skip_446758 | chr5:178212972-178213103 | -13.72 | -0.1270 | PHYKPL | ENST00000308158 | Frame-shift | | ENSG00000258199 | ENST00000553176 | exon_skip_462160 | chr6:127316449-127316502 | -7.26 | -0.7260 | ECHDC1 | ENST00000531967 | Frame-shift | | ENSG00000258199 | ENST00000553176 | exon_skip_470226 | chr7:103307595-103307708 | -11.97 | -0.1345 | PMPCB | ENST00000249269 | Frame-shift | | ENSG00000258199 | ENST00000553176 | exon_skip_476535 | chr7:76000889-76001002 | -12.93 | -0.1930 | STYXL1 | ENST00000248600,ENST00000359697,ENST00000431581 | Frame-shift | | ENSG00000258199 | ENST00000553176 | exon_skip_476549 | chr7:76013741-76013887 | -16.74 | -0.1318 | STYXL1 | ENST00000248600,ENST00000359697,ENST00000431581 | Frame-shift | | ENSG00000258199 | ENST00000553176 | exon_skip_479346 | chr7:124829253-124829342 | -6.86 | -0.1009 | POT1 | ENST00000357628 | Frame-shift | | ENSG00000258199 | ENST00000553176 | exon_skip_509943 | chrX:47175018-47175092 | -15.20 | -0.2413 | RBM10 | ENST00000377604 | Frame-shift | | ENSG00000258199 | ENST00000553176 | exon_skip_356468 | chr20:35280653-35280829 | -19.63 | -0.1402 | EIF6 | ENST00000374436,ENST00000374450 | Frame-shift | | ENSG00000258199 | ENST00000553176 | exon_skip_5818 | chr1:45568484-45568684 | -18.59 | -0.1062 | AKR1A1 | ENST00000351829,ENST00000372070 | Frame-shift | | ENSG00000258199 | ENST00000553176 | exon_skip_52671 | chr10:97461495-97461622 | -18.23 | -0.1823 | MMS19 | ENST00000370782,ENST00000438925 | Frame-shift | | ENSG00000258199 | ENST00000553176 | exon_skip_52701 | chr10:97468965-97469104 | -16.66 | -0.1487 | MMS19 | ENST00000370782,ENST00000438925 | Frame-shift | | ENSG00000258199 | ENST00000553176 | exon_skip_69695 | chr11:17959469-17959636 | -16.85 | -0.1066 | SERGEF | ENST00000265965 | Frame-shift | | ENSG00000258199 | ENST00000553176 | exon_skip_374581 | chr3:50110378-50110463 | -12.15 | -0.2292 | RBM5 | ENST00000347869 | Frame-shift | | ENSG00000258199 | ENST00000553176 | exon_skip_6457 | chr1:52083339-52083541 | -12.85 | -0.1190 | BTF3L4 | ENST00000313334 | Frame-shift | | ENSG00000258199 | ENST00000553176 | exon_skip_29546 | chr1:114737470-114737563 | -10.31 | -0.1747 | CSDE1 | ENST00000358528,ENST00000534699 | In-frame | | ENSG00000258199 | ENST00000553176 | exon_skip_120741 | chr15:34228428-34228589 | -16.19 | -0.1117 | EMC4 | ENST00000267750 | Frame-shift | | ENSG00000258199 | ENST00000553176 | exon_skip_324294 | chr2:27774423-27774530 | -12.24 | -0.1883 | MRPL33 | ENST00000296102 | Frame-shift | | ENSG00000258199 | ENST00000553176 | exon_skip_511289 | chrX:76176880-76176992 | -10.13 | -0.1192 | PBDC1 | ENST00000373358 | Frame-shift | | ENSG00000258199 | ENST00000553176 | exon_skip_133535 | chr16:14648387-14648592 | -16.36 | -0.1105 | BFAR | ENST00000261658 | Frame-shift | | ENSG00000258199 | ENST00000553176 | exon_skip_374469 | chr3:49967469-49968748 | -26.51 | -0.1082 | RBM6 | ENST00000266022 | Frame-shift | | ENSG00000258199 | ENST00000553176 | exon_skip_313503 | chr19:5611119-5611630 | -31.95 | -0.1098 | SAFB2 | ENST00000252542 | Frame-shift |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation | | ENSG00000258199 | ENSG00000005075 | POLR2J | ACC,BLCA,BRCA,CESC,CHOL,DLBC,HNSC,KICH,KIRC,KIRP,LGG,LIHC,OV,PAAD,READ,SARC,SKCM,TGCT,THCA,THYM,UCEC,UCS,UVM | KIRP | | | ENSG00000258199 | ENSG00000007392 | LUC7L | ACC,BLCA,BRCA,CHOL,ESCA,HNSC,KICH,KIRC,KIRP,LGG,LIHC,LUAD,LUSC,MESO,PAAD,PCPG,PRAD,READ,SKCM,TGCT,THCA,THYM,UCEC,UCS | KIRP | | | ENSG00000258199 | ENSG00000102898 | NUTF2 | ACC,CHOL,DLBC,KICH,KIRC,KIRP,LGG,LIHC,MESO,PCPG,PRAD,SARC,SKCM,THCA,THYM,UCS,UVM | KIRP | | | ENSG00000258199 | ENSG00000108773 | KAT2A | ACC,BLCA,BRCA,CHOL,COAD,GBM,HNSC,KICH,KIRC,KIRP,LIHC,LUAD,LUSC,MESO,PAAD,PCPG,PRAD,SKCM,THCA,UCEC | KIRP | | | ENSG00000258199 | ENSG00000124074 | ENKD1 | ACC,BLCA,BRCA,CESC,CHOL,DLBC,HNSC,KICH,KIRC,KIRP,LGG,LIHC,LUAD,MESO,PAAD,PCPG,PRAD,READ,SARC,SKCM,TGCT,THCA,THYM,UCEC,UCS,UVM | KIRP | | | ENSG00000258199 | ENSG00000127922 | SEM1 | ACC,BLCA,BRCA,CESC,CHOL,COAD,DLBC,ESCA,HNSC,KIRC,KIRP,LAML,LGG,LIHC,OV,READ,SKCM,STAD,TGCT,THCA,THYM,UCEC,UCS | KIRP | | | ENSG00000258199 | ENSG00000132522 | GPS2 | ACC,BRCA,CHOL,ESCA,KIRC,KIRP,LUAD,LUSC,PAAD,PCPG,PRAD,SKCM,STAD,TGCT,THCA,UCEC,UCS | KIRP | | | ENSG00000258199 | ENSG00000168096 | ANKS3 | ACC,BLCA,BRCA,CHOL,DLBC,ESCA,GBM,HNSC,KICH,KIRC,KIRP,LGG,LIHC,LUAD,LUSC,MESO,PAAD,PCPG,PRAD,READ,SARC,SKCM,TGCT,THCA,THYM,UCEC,UCS | KIRP | | | ENSG00000258199 | ENSG00000173272 | MZT2A | ACC,BLCA,BRCA,CESC,CHOL,DLBC,HNSC,KIRC,KIRP,LGG,LIHC,LUAD,LUSC,MESO,OV,PAAD,PCPG,PRAD,READ,SARC,SKCM,STAD,TGCT,THCA,THYM,UCEC,UCS,UVM | KIRP | | | ENSG00000258199 | ENSG00000204305 | AGER | ACC,BLCA,BRCA,CHOL,HNSC,KIRC,KIRP,LGG,LIHC,PAAD,TGCT,THYM,UCEC,UCS | KIRP | | | ENSG00000258199 | ENSG00000213977 | TAX1BP3 | ACC,BLCA,BRCA,CESC,CHOL,DLBC,KIRC,KIRP,LAML,LIHC,MESO,PRAD,READ,THCA,THYM,UCEC,UCS,UVM | KIRP | | | ENSG00000258199 | ENSG00000215252 | GOLGA8B | ACC,KICH,KIRC,KIRP,LUAD,LUSC,STAD,TGCT,THCA,UCEC | KIRP | | | ENSG00000258199 | ENSG00000277791 | PSMB3 | ACC,BLCA,CESC,CHOL,DLBC,HNSC,KIRC,KIRP,LGG,LIHC,MESO,PAAD,PCPG,PRAD,SARC,SKCM,THCA,THYM,UCEC | KIRP | | | ENSG00000258199 | ENSG00000010626 | LRRC23 | BLCA,CESC,CHOL,DLBC,KIRC,KIRP,MESO,PAAD,PCPG,PRAD,SARC,THCA,THYM | KIRP | | | ENSG00000258199 | ENSG00000023892 | DEF6 | BLCA,HNSC,KIRC,KIRP,TGCT,THYM,UCEC | KIRP | | | ENSG00000258199 | ENSG00000051523 | CYBA | BLCA,CHOL,DLBC,HNSC,KIRC,KIRP,MESO,PCPG,SARC,TGCT,THCA,THYM,UVM | KIRP | | | ENSG00000258199 | ENSG00000090971 | NAT14 | BLCA,BRCA,CESC,CHOL,DLBC,HNSC,KICH,KIRC,KIRP,LGG,LIHC,MESO,PAAD,PCPG,PRAD,READ,SARC,TGCT,THCA,THYM,UCEC,UCS,UVM | KIRP | | | ENSG00000258199 | ENSG00000100429 | HDAC10 | BLCA,BRCA,CHOL,DLBC,ESCA,HNSC,KIRC,KIRP,LGG,LIHC,LUAD,LUSC,MESO,OV,PAAD,PCPG,PRAD,SARC,SKCM,STAD,TGCT,THCA,THYM,UCEC | KIRP | | | ENSG00000258199 | ENSG00000103254 | ANTKMT | BLCA,BRCA,CHOL,DLBC,GBM,HNSC,KICH,KIRC,KIRP,LGG,LIHC,LUAD,MESO,OV,PAAD,PCPG,PRAD,SARC,SKCM,TGCT,THCA,THYM,UCEC,UCS,UVM | KIRP | | | ENSG00000258199 | ENSG00000109736 | MFSD10 | BLCA,BRCA,CHOL,KIRC,KIRP,LGG,LIHC,LUAD,MESO,PCPG,PRAD,SARC,TGCT,THCA,UCS | KIRP | | | ENSG00000258199 | ENSG00000121900 | TMEM54 | BLCA,BRCA,CESC,CHOL,DLBC,HNSC,KIRC,KIRP,LGG,LIHC,PCPG,PRAD,THCA,UCS | KIRP | | | ENSG00000258199 | ENSG00000127415 | IDUA | BLCA,BRCA,CHOL,DLBC,HNSC,KICH,KIRC,KIRP,LIHC,LUAD,PAAD,PCPG,PRAD,TGCT,THCA,THYM,UCEC,UCS | KIRP | | | ENSG00000258199 | ENSG00000130305 | NSUN5 | BLCA,BRCA,CHOL,DLBC,HNSC,KIRC,KIRP,LIHC,OV,READ,SARC,THCA,THYM,UCS | KIRP | | | ENSG00000258199 | ENSG00000142327 | RNPEPL1 | BLCA,CHOL,DLBC,HNSC,KIRC,KIRP,LGG,LIHC,LUAD,PCPG,PRAD,TGCT,THCA,THYM,UCS,UVM | KIRP | | | ENSG00000258199 | ENSG00000146067 | FAM193B | BLCA,BRCA,CHOL,HNSC,KICH,KIRC,KIRP,LIHC,PAAD,READ,SKCM,TGCT,THCA,THYM,UCEC,UCS | KIRP | | | ENSG00000258199 | ENSG00000157873 | TNFRSF14 | BLCA,BRCA,CHOL,DLBC,HNSC,KICH,KIRC,KIRP,LIHC,LUAD,MESO,PAAD,PCPG,PRAD,TGCT,THCA,THYM | KIRP | | | ENSG00000258199 | ENSG00000158062 | UBXN11 | BLCA,BRCA,CESC,CHOL,DLBC,ESCA,HNSC,KICH,KIRC,KIRP,LIHC,LUAD,LUSC,MESO,OV,PAAD,PRAD,READ,SKCM,TGCT,THCA,THYM,UCS | KIRP | | | ENSG00000258199 | ENSG00000158106 | RHPN1 | BLCA,BRCA,CHOL,GBM,HNSC,KIRC,KIRP,LIHC,PAAD,SARC,TGCT,THCA,THYM,UCEC,UCS | KIRP | | | ENSG00000258199 | ENSG00000167543 | TP53I13 | BLCA,BRCA,CHOL,DLBC,HNSC,KICH,KIRC,KIRP,LGG,LUAD,LUSC,MESO,PAAD,PCPG,PRAD,SARC,THCA,THYM,UCS | KIRP | | | ENSG00000258199 | ENSG00000167930 | FAM234A | BLCA,BRCA,CESC,CHOL,DLBC,HNSC,KICH,KIRC,KIRP,LGG,LIHC,LUAD,MESO,PAAD,PCPG,PRAD,READ,SARC,SKCM,THCA,THYM,UCEC,UCS,UVM | KIRP | | | ENSG00000258199 | ENSG00000175938 | ORAI3 | BLCA,BRCA,CESC,CHOL,DLBC,HNSC,KICH,KIRC,KIRP,LGG,LIHC,MESO,PAAD,PCPG,PRAD,READ,SARC,TGCT,THCA,THYM,UCEC,UCS | KIRP | | | ENSG00000258199 | ENSG00000180089 | TMEM86B | BLCA,CESC,CHOL,DLBC,KIRP,MESO,PAAD,PCPG,TGCT,THCA,THYM,UCEC,UCS | KIRP | | | ENSG00000258199 | ENSG00000184162 | NR2C2AP | BLCA,BRCA,CESC,CHOL,DLBC,HNSC,KICH,KIRC,KIRP,LGG,LIHC,MESO,PCPG,PRAD,THCA,THYM | KIRP | | | ENSG00000258199 | ENSG00000185347 | TEDC1 | BLCA,BRCA,CESC,CHOL,DLBC,HNSC,KIRP,LGG,LIHC,LUAD,MESO,PAAD,PCPG,PRAD,READ,THCA,THYM,UCS | KIRP | | | ENSG00000258199 | ENSG00000187642 | PERM1 | BLCA,KIRP,PAAD,PRAD,THCA | KIRP | | | ENSG00000258199 | ENSG00000198931 | APRT | BLCA,BRCA,CHOL,DLBC,HNSC,KIRC,KIRP,LGG,LIHC,MESO,PCPG,PRAD,READ,SARC,THCA,THYM,UCS,UVM | KIRP | | | ENSG00000258199 | ENSG00000205078 | SYCE1L | BLCA,CHOL,DLBC,HNSC,KIRC,KIRP,MESO,PAAD,PCPG,PRAD,READ,TGCT,THCA,THYM,UCEC,UCS | KIRP | | | ENSG00000258199 | ENSG00000213397 | HAUS7 | BLCA,CESC,DLBC,KIRC,KIRP,MESO,SARC,TGCT,THYM,UCEC | KIRP | | | ENSG00000258199 | ENSG00000215375 | MYL5 | BLCA,BRCA,CHOL,DLBC,HNSC,KIRC,KIRP,LGG,LIHC,LUAD,MESO,PCPG,PRAD,SARC,TGCT,THCA,THYM,UCEC | KIRP | | | ENSG00000258199 | ENSG00000241343 | RPL36A | BLCA,BRCA,CESC,CHOL,DLBC,ESCA,HNSC,KICH,KIRC,KIRP,LAML,LGG,LIHC,MESO,OV,PCPG,PRAD,READ,SARC,STAD,TGCT,THCA,THYM,UCEC | KIRP | | | ENSG00000258199 | ENSG00000246705 | H2AJ | BLCA,BRCA,CESC,CHOL,DLBC,HNSC,KIRC,KIRP,LGG,LIHC,MESO,PAAD,PRAD,READ,SARC,THCA,THYM,UVM | KIRP | | | ENSG00000258199 | ENSG00000247596 | TWF2 | BLCA,BRCA,CESC,CHOL,DLBC,HNSC,KIRC,KIRP,LGG,LIHC,MESO,PRAD,THCA,THYM | KIRP | | | ENSG00000258199 | ENSG00000002822 | MAD1L1 | BRCA,CHOL,DLBC,HNSC,KICH,KIRC,KIRP,LGG,PAAD,THCA,THYM | KIRP | | | ENSG00000258199 | ENSG00000071859 | FAM50A | BRCA,CESC,CHOL,DLBC,HNSC,KICH,KIRC,KIRP,LGG,LIHC,LUAD,LUSC,MESO,PAAD,PCPG,PRAD,THCA,THYM,UCEC,UCS,UVM | KIRP | | | ENSG00000258199 | ENSG00000099377 | HSD3B7 | BRCA,CHOL,HNSC,KICH,KIRC,KIRP,LIHC,PRAD,TGCT,THCA | KIRP | | | ENSG00000258199 | ENSG00000102125 | TAZ | BRCA,CHOL,DLBC,HNSC,KICH,KIRC,KIRP,LGG,LIHC,LUAD,LUSC,MESO,PAAD,PCPG,PRAD,SKCM,TGCT,THCA,THYM,UCEC,UCS | KIRP | | | ENSG00000258199 | ENSG00000102871 | TRADD | BRCA,CHOL,DLBC,HNSC,KIRP,MESO,PRAD,TGCT,THCA,THYM | KIRP | | | ENSG00000258199 | ENSG00000103260 | METRN | BRCA,CHOL,DLBC,HNSC,KIRC,KIRP,LGG,MESO,PAAD,PCPG,PRAD,THCA,THYM | KIRP | | | ENSG00000258199 | ENSG00000105327 | BBC3 | BRCA,CHOL,HNSC,KIRC,KIRP,LUAD,MESO,PAAD,THCA | KIRP | | | ENSG00000258199 | ENSG00000106268 | NUDT1 | BRCA,CESC,CHOL,DLBC,HNSC,KIRC,KIRP,LGG,LIHC,READ,THCA,THYM,UVM | KIRP | | | ENSG00000258199 | ENSG00000108518 | PFN1 | BRCA,CHOL,DLBC,KIRC,KIRP,LGG,LIHC,PCPG,PRAD,THCA,THYM | KIRP | | | ENSG00000258199 | ENSG00000111057 | KRT18 | BRCA,CHOL,HNSC,KICH,KIRP,LIHC,PRAD,READ,THCA | KIRP | | | ENSG00000258199 | ENSG00000115257 | PCSK4 | BRCA,CHOL,KIRC,KIRP,PAAD,PCPG,THCA,THYM | KIRP | | | ENSG00000258199 | ENSG00000119632 | IFI27L2 | BRCA,CESC,CHOL,DLBC,HNSC,KIRC,KIRP,LGG,LIHC,OV,PAAD,PCPG,PRAD,READ,SARC,TGCT,THCA,THYM,UCEC,UCS | KIRP | | | ENSG00000258199 | ENSG00000127586 | CHTF18 | BRCA,CHOL,HNSC,KICH,KIRC,KIRP,LIHC,LUAD,LUSC,MESO,PCPG,THCA,THYM,UCEC,UCS,UVM | KIRP | | | ENSG00000258199 | ENSG00000129946 | SHC2 | BRCA,CHOL,HNSC,KIRC,KIRP,LGG,MESO,PAAD,PCPG,PRAD,TGCT,THCA,UVM | KIRP | | | ENSG00000258199 | ENSG00000135722 | FBXL8 | BRCA,HNSC,KIRC,KIRP,LUAD,LUSC,MESO,PAAD,PCPG,THCA,THYM | KIRP | | | ENSG00000258199 | ENSG00000141696 | P3H4 | BRCA,HNSC,KIRC,KIRP,LIHC,THCA | KIRP | | | ENSG00000258199 | ENSG00000142102 | PGGHG | BRCA,CHOL,HNSC,KIRC,KIRP,TGCT,UCEC,UCS | KIRP | | | ENSG00000258199 | ENSG00000142669 | SH3BGRL3 | BRCA,CESC,CHOL,DLBC,KICH,KIRC,KIRP,LIHC,OV,PCPG,PRAD,TGCT,THCA,THYM,UCEC,UCS,UVM | KIRP | | | ENSG00000258199 | ENSG00000160345 | C9orf116 | BRCA,CESC,CHOL,KIRC,KIRP,PAAD | KIRP | | | ENSG00000258199 | ENSG00000162062 | TEDC2 | BRCA,DLBC,HNSC,KIRP,LGG,LIHC,LUSC,MESO,THYM,UCS | KIRP | | | ENSG00000258199 | ENSG00000162572 | SCNN1D | BRCA,KIRC,KIRP,LGG,MESO,PAAD,PCPG,PRAD,TGCT,THYM | KIRP | | | ENSG00000258199 | ENSG00000164877 | MICALL2 | BRCA,CHOL,HNSC,KIRC,KIRP,LIHC,THCA,UCS | KIRP | | | ENSG00000258199 | ENSG00000165948 | IFI27L1 | BRCA,DLBC,HNSC,KIRC,KIRP,LGG,LIHC,MESO,PAAD,PCPG,PRAD,TGCT,THCA,THYM | KIRP | | | ENSG00000258199 | ENSG00000174307 | PHLDA3 | BRCA,CHOL,HNSC,KIRC,KIRP,MESO,PCPG,PRAD,THCA,UVM | KIRP | | | ENSG00000258199 | ENSG00000174943 | KCTD13 | BRCA,CHOL,HNSC,KICH,KIRC,KIRP,LUSC,MESO,PAAD,PCPG,TGCT,THCA,UCS | KIRP | | | ENSG00000258199 | ENSG00000177595 | PIDD1 | BRCA,CHOL,HNSC,KICH,KIRC,KIRP,LGG,LIHC,PAAD,THCA,THYM,UCS | KIRP | | | ENSG00000258199 | ENSG00000177697 | CD151 | BRCA,CHOL,KIRC,KIRP,LIHC,THCA,UCS,UVM | KIRP | | | ENSG00000258199 | ENSG00000177989 | ODF3B | BRCA,CHOL,HNSC,KIRC,KIRP,LUAD,MESO,PAAD,PCPG,PRAD,TGCT,THCA,THYM | KIRP | | | ENSG00000258199 | ENSG00000178026 | LRRC75B | BRCA,CHOL,DLBC,HNSC,KIRC,KIRP,LGG,LUAD,MESO,PCPG,PRAD,TGCT,THCA,UCEC,UCS,UVM | KIRP | | | ENSG00000258199 | ENSG00000183248 | PRR36 | BRCA,CHOL,KIRP,LUAD,LUSC,MESO,PAAD,THCA,UCS | KIRP | | | ENSG00000258199 | ENSG00000185101 | ANO9 | BRCA,CHOL,HNSC,KIRC,KIRP,TGCT,THYM | KIRP | | | ENSG00000258199 | ENSG00000109113 | RAB34 | CESC,CHOL,HNSC,KIRP,LIHC,MESO,PRAD,SARC,THCA,UCS | KIRP | | | ENSG00000258199 | ENSG00000126246 | IGFLR1 | CESC,KIRC,KIRP,TGCT,THYM,UCS | KIRP | | | ENSG00000258199 | ENSG00000126264 | HCST | CESC,CHOL,DLBC,HNSC,KICH,KIRC,KIRP,LGG,LIHC,MESO,PCPG,PRAD,TGCT,THYM | KIRP | | | ENSG00000258199 | ENSG00000161888 | SPC24 | CESC,DLBC,HNSC,KIRC,KIRP,LGG,LIHC,MESO,READ,THYM | KIRP | | | ENSG00000258199 | ENSG00000185482 | STAC3 | CESC,CHOL,COAD,DLBC,KIRC,KIRP,PCPG,THYM,UCEC | KIRP | | | ENSG00000258199 | ENSG00000189159 | JPT1 | CESC,CHOL,DLBC,HNSC,KIRC,KIRP,LGG,LIHC,READ,THCA,THYM | KIRP | | | ENSG00000258199 | ENSG00000204397 | CARD16 | CESC,CHOL,DLBC,HNSC,KIRC,KIRP,LIHC,PCPG,SARC,TGCT,THYM | KIRP | | | ENSG00000258199 | ENSG00000217555 | CKLF | CESC,CHOL,DLBC,ESCA,HNSC,KIRP,LGG,LIHC,MESO,PCPG,SARC,STAD,TGCT,THYM | KIRP | | | ENSG00000258199 | ENSG00000049541 | RFC2 | CHOL,HNSC,KIRP,LIHC,THCA,THYM | KIRP | | | ENSG00000258199 | ENSG00000105559 | PLEKHA4 | CHOL,DLBC,KIRP,LIHC,MESO | KIRP | | | ENSG00000258199 | ENSG00000106077 | ABHD11 | CHOL,HNSC,KIRP,LGG,LIHC,SARC,THCA,THYM,UCS | KIRP | | | ENSG00000258199 | ENSG00000111679 | PTPN6 | CHOL,KIRC,KIRP,THYM,UCS | KIRP | | | ENSG00000258199 | ENSG00000115325 | DOK1 | CHOL,HNSC,KIRP,MESO,THYM | KIRP | | | ENSG00000258199 | ENSG00000131188 | PRR7 | CHOL,HNSC,KIRC,KIRP,LIHC,PAAD,THCA,THYM | KIRP | | | ENSG00000258199 | ENSG00000132432 | SEC61G | CHOL,DLBC,KIRC,KIRP,LAML,LIHC,OV,READ,THCA,THYM | KIRP | | | ENSG00000258199 | ENSG00000136717 | BIN1 | CHOL,DLBC,KIRP,LIHC,MESO,PAAD,SARC,THYM | KIRP | | | ENSG00000258199 | ENSG00000141378 | PTRH2 | CHOL,DLBC,HNSC,KIRC,KIRP,LGG,LIHC,PRAD,THCA,THYM | KIRP | | | ENSG00000258199 | ENSG00000148908 | RGS10 | CHOL,DLBC,HNSC,KIRP,THYM | KIRP | | | ENSG00000258199 | ENSG00000153044 | CENPH | CHOL,HNSC,KIRP,LAML,LIHC,MESO,THYM | KIRP | | | ENSG00000258199 | ENSG00000163191 | S100A11 | CHOL,KICH,KIRC,KIRP,LIHC,PCPG,TGCT,THCA,UCS | KIRP | | | ENSG00000258199 | ENSG00000167604 | NFKBID | CHOL,HNSC,KIRP,PAAD,THYM,UCS | KIRP | | | ENSG00000258199 | ENSG00000173457 | PPP1R14B | CHOL,DLBC,HNSC,KICH,KIRC,KIRP,LGG,LIHC,READ,THCA,THYM,UCEC | KIRP | | | ENSG00000258199 | ENSG00000174939 | ASPHD1 | CHOL,KIRP,PAAD,READ,THYM | KIRP | | | ENSG00000258199 | ENSG00000180448 | ARHGAP45 | CHOL,HNSC,KICH,KIRP,THYM | KIRP | | | ENSG00000258199 | ENSG00000186395 | KRT10 | CHOL,KIRC,KIRP,LAML,LGG,LIHC,MESO,PAAD,PCPG,PRAD,THCA,THYM | KIRP | | | ENSG00000258199 | ENSG00000204264 | PSMB8 | CHOL,DLBC,KIRP,TGCT,THYM | KIRP | | | ENSG00000258199 | ENSG00000204482 | LST1 | CHOL,DLBC,HNSC,KIRC,KIRP,TGCT,THYM | KIRP | | | ENSG00000258199 | ENSG00000213139 | CRYGS | CHOL,KIRP,PAAD,TGCT,UCEC | KIRP | | | ENSG00000258199 | ENSG00000231925 | TAPBP | CHOL,KIRC,KIRP,LGG,TGCT,THCA,THYM,UCS | KIRP | | | ENSG00000258199 | ENSG00000250067 | YJEFN3 | CHOL,KIRC,KIRP,LUSC,PAAD | KIRP | | | ENSG00000258199 | ENSG00000198324 | PHETA1 | COAD,HNSC,KICH,KIRC,KIRP,LGG,LIHC,PRAD,THCA,UVM | KIRP | | | ENSG00000258199 | ENSG00000204839 | MROH6 | DLBC,KIRC,KIRP,TGCT,THCA,UCS | KIRP | | | ENSG00000258199 | ENSG00000175265 | GOLGA8A | ESCA,HNSC,KICH,KIRC,KIRP,LUSC,OV,PAAD,TGCT,THCA,UCS | KIRP | | | ENSG00000258199 | ENSG00000082014 | SMARCD3 | HNSC,KIRP,PAAD,SARC,THCA | KIRP | | | ENSG00000258199 | ENSG00000143554 | SLC27A3 | HNSC,KIRC,KIRP,PAAD,THCA | KIRP | | | ENSG00000258199 | ENSG00000167895 | TMC8 | HNSC,KIRC,KIRP,THYM,UCS | KIRP | | | ENSG00000258199 | ENSG00000170421 | KRT8 | HNSC,KIRP,LIHC,PRAD,THYM | KIRP | | | ENSG00000258199 | ENSG00000142227 | EMP3 | KICH,KIRC,KIRP,TGCT,THCA,THYM | KIRP | | | ENSG00000258199 | ENSG00000073605 | GSDMB | KIRC,KIRP,LUSC,TGCT,THCA,UCS | KIRP | | | ENSG00000258199 | ENSG00000143590 | EFNA3 | KIRC,KIRP,LIHC,MESO,TGCT,THCA,UCS | KIRP | | | ENSG00000258199 | ENSG00000145014 | TMEM44 | KIRC,KIRP,TGCT,THCA,UCS | KIRP | | | ENSG00000258199 | ENSG00000213903 | LTB4R | KIRC,KIRP,PAAD,UCEC,UCS | KIRP | | | ENSG00000258199 | ENSG00000135119 | RNFT2 | KIRP,LGG,PCPG,THYM,UCS | KIRP | |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation | | ENSG00000258199 | ENST00000553176 | WNK1 | ENSG00000060237 | ENST00000574564 | -0.1510 | 98 | - | KIRP | | ENSG00000258199 | ENST00000553176 | CMTM4 | ENSG00000183723 | ENST00000561680 | -0.1008 | 70 | - | KIRP | | ENSG00000258199 | ENST00000553176 | TNS1 | ENSG00000079308 | ENST00000453356 | -0.1132 | 109 | - | KIRP | | ENSG00000258199 | ENST00000553176 | SMARCA2 | ENSG00000080503 | ENST00000382186 | -0.3100 | 230 | - | KIRP | | ENSG00000258199 | ENST00000553176 | L2HGDH | ENSG00000087299 | ENST00000261699 | -0.2988 | 130 | - | KIRP | | ENSG00000258199 | ENST00000553176 | L2HGDH | ENSG00000087299 | ENST00000555423 | -0.1424 | 200 | - | KIRP | | ENSG00000258199 | ENST00000553176 | L2HGDH | ENSG00000087299 | ENST00000555610 | -0.1060 | 58 | - | KIRP | | ENSG00000258199 | ENST00000553176 | HMGCR | ENSG00000113161 | ENST00000509085 | -0.1143 | 85 | - | KIRP | | ENSG00000258199 | ENST00000553176 | HMGCR | ENSG00000113161 | ENST00000511986 | -0.1143 | 86 | - | KIRP | | ENSG00000258199 | ENST00000553176 | DNAJC16 | ENSG00000116138 | ENST00000472665 | -0.1391 | 93 | - | KIRP | | ENSG00000258199 | ENST00000553176 | ACADM | ENSG00000117054 | ENST00000420607 | -0.1255 | 9 | - | KIRP | | ENSG00000258199 | ENST00000553176 | ACADM | ENSG00000117054 | ENST00000528016 | -0.1143 | 1 | - | KIRP | | ENSG00000258199 | ENST00000553176 | ALDH6A1 | ENSG00000119711 | ENST00000350259 | -0.1407 | 1 | - | KIRP | | ENSG00000258199 | ENST00000553176 | KIAA1191 | ENSG00000122203 | ENST00000533553 | -0.1369 | 148 | - | KIRP | | ENSG00000258199 | ENST00000553176 | RASSF8 | ENSG00000123094 | ENST00000539545 | -0.1050 | 102 | - | KIRP | | ENSG00000258199 | ENST00000553176 | ITPR2 | ENSG00000123104 | ENST00000242737 | -0.1377 | 246 | - | KIRP | | ENSG00000258199 | ENST00000553176 | WWC2 | ENSG00000151718 | ENST00000508614 | -0.1005 | 1 | - | KIRP | | ENSG00000258199 | ENST00000553176 | ZFYVE9 | ENSG00000157077 | ENST00000357206 | -0.1123 | 1 | - | KIRP | | ENSG00000258199 | ENST00000553176 | ATP1A1 | ENSG00000163399 | ENST00000440951 | -0.1114 | 128 | - | KIRP | | ENSG00000258199 | ENST00000553176 | CRYL1 | ENSG00000165475 | ENST00000298248 | -0.1020 | 1 | - | KIRP | | ENSG00000258199 | ENST00000553176 | CRYL1 | ENSG00000165475 | ENST00000382812 | -0.1020 | 1 | - | KIRP | | ENSG00000258199 | ENST00000553176 | SNX18 | ENSG00000178996 | ENST00000326277 | -0.2000 | 117 | - | KIRP | | ENSG00000258199 | ENST00000553176 | CIPC | ENSG00000198894 | ENST00000555437 | -0.1622 | 156 | - | KIRP | | ENSG00000258199 | ENST00000553176 | CIPC | ENSG00000198894 | ENST00000555611 | -0.1075 | 72 | - | KIRP | | ENSG00000258199 | ENST00000553176 | TNS3 | ENSG00000136205 | ENST00000442536 | -0.2963 | 221 | - | KIRP | | ENSG00000258199 | ENST00000553176 | TNS3 | ENSG00000136205 | ENST00000458317 | -0.1875 | 226 | - | KIRP | | ENSG00000258199 | ENST00000553176 | HEG1 | ENSG00000173706 | ENST00000311127 | -0.1155 | 1 | - | KIRP | | ENSG00000258199 | ENST00000553176 | HEG1 | ENSG00000173706 | ENST00000487661 | -0.1155 | 1 | - | KIRP | | ENSG00000258199 | ENST00000553176 | CTH | ENSG00000116761 | ENST00000346806 | -0.1193 | 162 | - | KIRP | | ENSG00000258199 | ENST00000553176 | ACSL1 | ENSG00000151726 | ENST00000504342 | -0.1178 | 140 | - | KIRP | | ENSG00000258199 | ENST00000553176 | ACSL1 | ENSG00000151726 | ENST00000513317 | -0.2053 | 175 | - | KIRP | | ENSG00000258199 | ENST00000553176 | ANKRD46 | ENSG00000186106 | ENST00000519316 | -0.2238 | 194 | - | KIRP | | ENSG00000258199 | ENST00000553176 | USP46 | ENSG00000109189 | ENST00000508499 | -0.2637 | 175 | - | KIRP | | ENSG00000258199 | ENST00000553176 | USP46 | ENSG00000109189 | ENST00000512656 | -0.1374 | 141 | - | KIRP |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000258199.1 | ENST00000553176.1 | 136 | 46 | 456 |
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