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Center for Computational Systems Medicine
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lncRNA summary

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lncRNA structure and expression level

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lncRNA-Protein interaction

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lncRNA-DNA interaction

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lncRNA-RNA interaction

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Variants in lncRNA

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lncRNAs regulate the target genes through functioning as enhancers

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lncRNAs regulate the target genes through recruiting transcript factors

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lncRNAs regulate the alternative splicing events through interacting with splicing factor

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lncRNAs regulate mRNA through targeting the 3'-UTR region

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lncRNAs regulate mRNA by competing with miRNA

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lncRNA coding potential

lncRNA: ENSG00000257702

Summary for LBX2-AS1

check button Gene summary

Gene informationEnsembl ID

ENSG00000257702

Gene symbol

LBX2-AS1

Gene nameLBX2 antisense RNA 1
HGNC

25136

Entrez ID

151534

Gene typeantisense
Synonyms02p13.1|LBX2-AS1
UniProtAcc

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Structure and expression level for LBX2-AS1

check buttonDifferentially expressed gene analysis between cancer and normal samples.
DEG result
Ensembl IDBase meanlog2FC(AD/control)lfcSEStatP-valueAdjc.p-valueDEG direction Cancer type
ENSG000002577021.378242e+023.155720e+004.531312e-016.964252e+003.300000e-128.720000e-11UPGBM
ENSG000002577028.863246e+02-1.746122e+002.361541e-01-7.393995e+001.420000e-132.890000e-12DOWNCHOL
ENSG000002577022.103641e+021.482656e+001.182546e-011.253783e+014.640000e-362.000000e-34UPTHCA
ENSG000002577028.850604e+021.300126e+001.040978e-011.248947e+018.520000e-361.140000e-34UPKIRC
ENSG000002577021.945992e+02-1.042966e+003.459048e-01-3.015181e+002.568257e-035.750692e-03DOWNKICH
ENSG000002577023.273683e+021.111576e+002.222395e-015.001701e+005.680000e-075.370000e-06UPBLCA
ENSG000002577022.329867e+021.259477e+001.395165e-019.027444e+001.760000e-193.480000e-18UPHNSC
ENSG000002577021.347684e+031.748169e+001.747178e-011.000567e+011.440000e-235.020000e-22UPKIRP
ENSG000002577022.331252e+021.819419e+001.964389e-019.262012e+002.010000e-203.360000e-19UPUCEC

check buttonCorrelation between lncRNAs and cancer stages.
LncRNA Ensembl IDCorrelationP-valueCancer TypeAdjc.p-value
ENSG00000257702-4.457370e-012.150642e-03CHOL3.224047e-03
ENSG00000257702-5.287957e-019.992212e-08KICH3.853456e-07
ENSG000002577023.186948e-018.077991e-16KIRC3.709281e-15

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lncRNA-Protein interaction for LBX2-AS1

lncrna_protein
check buttonlncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).
Epi result
LncRNA Ensembl IDLncRNA ENST IDLncRNA NameProtein Ensembl IDProtein NameCatRAPID ScoreLncpro ScoreUniPortIDGene SubtypePublic source
ENSG00000257702ENST00000548978LBX2-AS1ENSG00000204371EHMT239.9995.7258Q96KQ7EpiPredict
ENSG00000257702ENST00000548978LBX2-AS1ENSG00000280789PAGR114.9992.5363Q9BTK6EpiNA
ENSG00000257702ENST00000603175LBX2-AS1ENSG00000204371EHMT245.0693.6847Q96KQ7EpiPredict
ENSG00000257702ENST00000603175LBX2-AS1ENSG00000280789PAGR112.2293.5921Q9BTK6EpiNA
ENSG00000257702ENST00000548978LBX2-AS1ENSG00000156860FBRS7.0490.3619Q9HAH7EpiNA
ENSG00000257702ENST00000603175LBX2-AS1ENSG00000156860FBRS8.3292.4608Q9HAH7EpiNA

check buttonlncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).
TF result
LncRNA Ensembl IDLncRNA ENST IDLncRNA NameProtein Ensembl IDProtein NameCatRAPID ScoreLncpro ScoreUniPortIDGene SubtypePublic source
ENSG00000257702ENST00000548978LBX2-AS1ENSG00000102878HSF416.9492.0595Q9ULV5TFNA
ENSG00000257702ENST00000603175LBX2-AS1ENSG00000197114ZGPAT66.5190.2114Q8N5A5TF,EpiNA
ENSG00000257702ENST00000603175LBX2-AS1ENSG00000102878HSF419.3193.3824Q9ULV5TFNA
ENSG00000257702ENST00000603175LBX2-AS1ENSG00000250571GLI413.1492.1383P10075TFNA

check buttonlncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).
RBP result
LncRNA Ensembl IDLncRNA ENST IDLncRNA NameProtein Ensembl IDProtein NameCatRAPID ScoreLncpro ScoreUniPortIDGene SubtypePublic source
ENSG00000257702ENST00000603175LBX2-AS1ENSG00000150316CWC1519.8291.7996Q9P013RBPNA
ENSG00000257702ENST00000548978LBX2-AS1ENSG00000150316CWC1522.1491.3142Q9P013RBPNA

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lncRNA-DNA interaction for LBX2-AS1

lncrna_DNA
check buttonlncRNA targets the enhancer region and positively regulates the gene expression.

check buttonlncRNA targets the promoter region and positively regulates the gene expression.

check buttonlncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for LBX2-AS1

lncrna_RNA
check buttonlncRNA targets the 3'UTR region and negatively regulates the mRNA.
Only predicted by lncTar
ECPAS,TFIP11,KATNAL1,METAP1,PAIP2,MYCBP2,PPP2R5C,GTF2I,EIF3L,KTN1,CSNK1A1,SNX29,ATP5F1A,SLC25A12,CPEB4,TTC37,NAF1,RANBP2,SLC25A40,NUP155,KBTBD4,RBMX,STRBP,FRY,EIF3A,CLINT1,MECP2,CYLD,G3BP1,PCCB,TPST2,ATP5F1B,TTBK2,SMARCA2,KIAA1109,MKKS,CLIP1,FAM13B,CEP41,AMN1,CLASP2,IARS1,ATP6V1H,GABARAPL1,UTP15,COPS3,GTPBP10,FAM172A,CDV3,ATXN10,SLC25A5,RNF38,GFM2,RAP1GDS1
Exist in public source
NA

check buttonlncRNA targets the skipped exon region.
-lncRNA and exonskipping events are positively correlated.
lncRNA and exonskipping events positive correlated
LncRNA Ensembl IDLncRNA ENST IDExon IDSkipped ExondGndGGene name with skipped exonTransID with skipped exonORF mutation
ENSG00000257702ENST00000548978exon_skip_462972chr6:152130719-152130778-12.32-0.3850SYNE1ENST00000367255Frame-shift
ENSG00000257702ENST00000548978exon_skip_84780chr12:57720098-57720263-27.41-0.1713OS9ENST00000315970In-frame
ENSG00000257702ENST00000548978exon_skip_334374chr2:227347225-227347384-16.55-0.1313MFFENST00000353339In-frame
ENSG00000257702ENST00000548978exon_skip_141221chr16:3023473-3023530-14.10-0.2712HCFC1R1ENST00000574980In-frame

-lncRNA and exonskipping events are negatively correlated.
lncRNA and exonskipping events negative correlated
LncRNA Ensembl IDLncRNA ENST IDExon IDSkipped ExondGndGGene name with skipped exonTransID with skipped exonLOF
ENSG00000257702ENST00000548978exon_skip_371367chr3:9697710-9697866-22.96-0.1640MTMR14ENST00000296003In-frame

check buttonlncRNA targets by miRNA.
LncRNA Ensembl IDmiRNA IDLncRNA ENST IDBinding site in lncRNAScoreEnergyAlign LenPublic source

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Variants for LBX2-AS1

check buttonRNA A-to-I editing events in lncRNA.
LncRNAediting IDLncRNA Ensembl IDChromosomeEditing PositionStrandGene TypeGene NameTranscript IDTranscript TypeTranscript Name

check buttonEdited-associated DElncRNAs in cancer.
LncRNA Ensembl IDLncRNA IndexCancer TypeChr_Postion_StrandAVE1AVE2log2FCW-valueP-valueAdjc.p-valueChange

check buttonCorrelation between RNA A-to-I editing events's frequecy and lncRNA expression.
LncRNA Ensembl IDLncRNA IndexCorrelationP-valueAdjc.p-value

check buttonCis-expression quantitative trait loci(cis-eQTL) of lncRNA.
LncRNA Ensembl IDLncRNA NameSNP infoNumber of Positive corelated CancerPositive corelated CancerNumber of Negative corelated CancerNegative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncrna_enhancer
check buttonlncRNA regulates differentially expressed genes by function as enhancer.
LncRNA Ensembl IDPC Gene IDPC Gene NamePositive correlated cancersCancer with PC gene up-regulationCancer with PC gene down-regulation

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lncRNAs regulate the target genes through recruiting transcript factors

lncrna_TF
check buttonLncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).
lncRNA IDTF IDTF NamePCgene IDPCgene NameNumber of CancerCanaer Types

check buttonLncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).
lncRNA IDTF IDTF NamePCgene IDPCgene NameNumber of CancerCanaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

lncrna_AS
check buttonLncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.
LncRNA Ensembl IDRBP IDRBP Gene NameExon Skipping IDSkipped ExonEX Gene NameEX Affected TransIDORF_annoCancer Type

check buttonLncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.
LncRNA Ensembl IDRBP IDRBP Gene NameExon Skipping IDSkipped ExonEX Gene NameEX Affected TransIDORF_annoCancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncrna_mRNA
check buttonlncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.
LncRNA Ensembl IDLncRNA ENST IDPC Gene NamePC Gene IDPC ENST IDdGnDGCancer with PC gene up-regulationCancer with PC gene Down-regulation
ENSG00000257702ENST00000603175FRYENSG00000073910ENST00000380217-0.34201600-GBM,KIRC,BLCA,KIRP
ENSG00000257702ENST00000603175CEP41ENSG00000106477ENST00000343969-0.1037278CHOL-
ENSG00000257702ENST00000603175CEP41ENSG00000106477ENST00000471201-0.1075451CHOL-
ENSG00000257702ENST00000603175CLIP1ENSG00000130779ENST00000540338-0.32191341KICHBLCA
ENSG00000257702ENST00000603175CLIP1ENSG00000130779ENST00000541108-0.1308261KICHBLCA
ENSG00000257702ENST00000603175AMN1ENSG00000151743ENST00000536761-1.10255-GBM
ENSG00000257702ENST00000603175AMN1ENSG00000151743ENST00000542781-0.2352663-GBM
ENSG00000257702ENST00000603175STRBPENSG00000165209ENST00000471564-0.1261265KICH-
ENSG00000257702ENST00000603175TPST2ENSG00000128294ENST00000445720-0.1524527KICHKIRP
ENSG00000257702ENST00000548978FRYENSG00000073910ENST00000380217-0.34201368-GBM,KIRC,BLCA,KIRP
ENSG00000257702ENST00000548978CEP41ENSG00000106477ENST00000343969-0.1037278CHOL-
ENSG00000257702ENST00000548978CEP41ENSG00000106477ENST00000471201-0.1075451CHOL-
ENSG00000257702ENST00000548978CLIP1ENSG00000130779ENST00000540338-0.32191109KICHBLCA
ENSG00000257702ENST00000548978CLIP1ENSG00000130779ENST00000541108-0.1308261KICHBLCA
ENSG00000257702ENST00000548978AMN1ENSG00000151743ENST00000536761-1.10255-GBM
ENSG00000257702ENST00000548978AMN1ENSG00000151743ENST00000542781-0.2352663-GBM
ENSG00000257702ENST00000548978STRBPENSG00000165209ENST00000471564-0.1261265KICH-
ENSG00000257702ENST00000548978TPST2ENSG00000128294ENST00000445720-0.1524527KICHKIRP
ENSG00000257702ENST00000603175TFIP11ENSG00000100109ENST00000407431-0.35441600KICH-
ENSG00000257702ENST00000603175TFIP11ENSG00000100109ENST00000407148-0.35441600KICH-
ENSG00000257702ENST00000603175TFIP11ENSG00000100109ENST00000405938-0.87001600KICH-
ENSG00000257702ENST00000603175SLC25A12ENSG00000115840ENST00000426896-0.1229812CHOLGBM,BLCA,HNSC
ENSG00000257702ENST00000603175RAP1GDS1ENSG00000138698ENST00000510870-0.17391353KICHGBM
ENSG00000257702ENST00000603175RAP1GDS1ENSG00000138698ENST00000408900-0.11211204KICHGBM
ENSG00000257702ENST00000603175RAP1GDS1ENSG00000138698ENST00000339360-0.11211204KICHGBM
ENSG00000257702ENST00000548978TFIP11ENSG00000100109ENST00000407431-0.35441368KICH-
ENSG00000257702ENST00000548978TFIP11ENSG00000100109ENST00000407148-0.35441368KICH-
ENSG00000257702ENST00000548978TFIP11ENSG00000100109ENST00000405938-0.87001368KICH-
ENSG00000257702ENST00000548978CLASP2ENSG00000163539ENST00000487553-0.1200784-GBM
ENSG00000257702ENST00000548978RAP1GDS1ENSG00000138698ENST00000510870-0.17391121KICHGBM
ENSG00000257702ENST00000548978RAP1GDS1ENSG00000138698ENST00000408900-0.1121972KICHGBM
ENSG00000257702ENST00000548978RAP1GDS1ENSG00000138698ENST00000339360-0.1121972KICHGBM
ENSG00000257702ENST00000603175ATP6V1HENSG00000047249ENST00000519588-0.1148310-GBM,KIRC
ENSG00000257702ENST00000603175SLC25A40ENSG00000075303ENST00000444363-0.18291084KICH-
ENSG00000257702ENST00000603175MKKSENSG00000125863ENST00000399054-0.13731702KICH-
ENSG00000257702ENST00000603175GABARAPL1ENSG00000139112ENST00000539408-0.1704341KICHGBM,KIRC,BLCA,UCEC
ENSG00000257702ENST00000603175GABARAPL1ENSG00000139112ENST00000421801-0.1112900KICHGBM,KIRC,BLCA,UCEC
ENSG00000257702ENST00000603175GABARAPL1ENSG00000139112ENST00000544284-0.2565565KICHGBM,KIRC,BLCA,UCEC
ENSG00000257702ENST00000603175GABARAPL1ENSG00000139112ENST00000545047-0.1167344KICHGBM,KIRC,BLCA,UCEC
ENSG00000257702ENST00000603175GABARAPL1ENSG00000139112ENST00000541453-0.1385590KICHGBM,KIRC,BLCA,UCEC
ENSG00000257702ENST00000603175GABARAPL1ENSG00000139112ENST00000543602-0.12221178KICHGBM,KIRC,BLCA,UCEC
ENSG00000257702ENST00000603175GABARAPL1ENSG00000139112ENST00000537201-0.1279256KICHGBM,KIRC,BLCA,UCEC
ENSG00000257702ENST00000603175GABARAPL1ENSG00000139112ENST00000545887-0.2829546KICHGBM,KIRC,BLCA,UCEC
ENSG00000257702ENST00000603175ATP5F1AENSG00000152234ENST00000592364-0.1083241-KIRC,HNSC
ENSG00000257702ENST00000603175SMARCA2ENSG00000080503ENST00000382186-2.28001213-GBM,KIRP,UCEC
ENSG00000257702ENST00000603175PCCBENSG00000114054ENST00000251654-0.1248336-KIRC
ENSG00000257702ENST00000603175PCCBENSG00000114054ENST00000490504-0.1248336-KIRC
ENSG00000257702ENST00000603175PCCBENSG00000114054ENST00000483687-0.1248336-KIRC
ENSG00000257702ENST00000603175PCCBENSG00000114054ENST00000468777-0.1248336-KIRC
ENSG00000257702ENST00000603175PCCBENSG00000114054ENST00000462637-0.1248336-KIRC
ENSG00000257702ENST00000603175PCCBENSG00000114054ENST00000466072-0.1248336-KIRC
ENSG00000257702ENST00000603175PCCBENSG00000114054ENST00000482086-0.1248336-KIRC
ENSG00000257702ENST00000548978SLC25A5ENSG00000005022ENST00000317881-0.1238724KICHKIRC
ENSG00000257702ENST00000548978ATP6V1HENSG00000047249ENST00000522849-0.1128632-GBM,KIRC
ENSG00000257702ENST00000548978ATP6V1HENSG00000047249ENST00000519588-0.1148310-GBM,KIRC
ENSG00000257702ENST00000548978SLC25A40ENSG00000075303ENST00000444363-0.1829852KICH-
ENSG00000257702ENST00000548978MKKSENSG00000125863ENST00000399054-0.13731470KICH-
ENSG00000257702ENST00000548978GABARAPL1ENSG00000139112ENST00000539408-0.1704341KICHGBM,KIRC,BLCA,UCEC
ENSG00000257702ENST00000548978GABARAPL1ENSG00000139112ENST00000544284-0.2565565KICHGBM,KIRC,BLCA,UCEC
ENSG00000257702ENST00000548978GABARAPL1ENSG00000139112ENST00000545047-0.1167344KICHGBM,KIRC,BLCA,UCEC
ENSG00000257702ENST00000548978GABARAPL1ENSG00000139112ENST00000541453-0.1385590KICHGBM,KIRC,BLCA,UCEC
ENSG00000257702ENST00000548978GABARAPL1ENSG00000139112ENST00000543602-0.1222946KICHGBM,KIRC,BLCA,UCEC
ENSG00000257702ENST00000548978GABARAPL1ENSG00000139112ENST00000537201-0.1279256KICHGBM,KIRC,BLCA,UCEC
ENSG00000257702ENST00000548978GABARAPL1ENSG00000139112ENST00000545887-0.2829546KICHGBM,KIRC,BLCA,UCEC
ENSG00000257702ENST00000548978ATP5F1AENSG00000152234ENST00000592364-0.1083241-KIRC,HNSC
ENSG00000257702ENST00000548978SMARCA2ENSG00000080503ENST00000382186-2.2800981-GBM,KIRP,UCEC
ENSG00000257702ENST00000548978PCCBENSG00000114054ENST00000251654-0.1248336-KIRC
ENSG00000257702ENST00000548978PCCBENSG00000114054ENST00000490504-0.1248336-KIRC
ENSG00000257702ENST00000548978PCCBENSG00000114054ENST00000483687-0.1248336-KIRC
ENSG00000257702ENST00000548978PCCBENSG00000114054ENST00000468777-0.1248336-KIRC
ENSG00000257702ENST00000548978PCCBENSG00000114054ENST00000462637-0.1248336-KIRC
ENSG00000257702ENST00000548978PCCBENSG00000114054ENST00000466072-0.1248336-KIRC
ENSG00000257702ENST00000548978PCCBENSG00000114054ENST00000482086-0.1248336-KIRC

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lncRNAs regulate mRNA by competing with miRNA

lncrna_miRNA
check buttonlncRNA regulates mRNA by competing the miRNA binding site with mRNA.
LncRNA Ensembl IDlncRNA-miRNA-mRNACancer Types

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lncRNA coding potential

check buttonORFfinder result for the gencode.v22.lncRNA.transcript.fa.
lncRNA Ensembl IDlncRNA ENST IDlength(AA)start at transcriptend at transcript
ENSG00000257702.3ENST00000603175.1152191646
ENSG00000257702.3ENST00000548978.2140971549