lncRNA targets the enhancer region and positively regulates the gene expression. |
lncRNA targets the promoter region and positively regulates the gene expression. |
lncRNA targets the promoter region and negatively regulates the gene expression. |
lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
Only predicted by lncTar | ECPAS,TFIP11,KATNAL1,METAP1,PAIP2,MYCBP2,PPP2R5C,GTF2I,EIF3L,KTN1,CSNK1A1,SNX29,ATP5F1A,SLC25A12,CPEB4,TTC37,NAF1,RANBP2,SLC25A40,NUP155,KBTBD4,RBMX,STRBP,FRY,EIF3A,CLINT1,MECP2,CYLD,G3BP1,PCCB,TPST2,ATP5F1B,TTBK2,SMARCA2,KIAA1109,MKKS,CLIP1,FAM13B,CEP41,AMN1,CLASP2,IARS1,ATP6V1H,GABARAPL1,UTP15,COPS3,GTPBP10,FAM172A,CDV3,ATXN10,SLC25A5,RNF38,GFM2,RAP1GDS1 | Exist in public source | NA |
lncRNA targets the skipped exon region. | -lncRNA and exonskipping events are positively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | ENSG00000257702 | ENST00000548978 | exon_skip_462972 | chr6:152130719-152130778 | -12.32 | -0.3850 | SYNE1 | ENST00000367255 | Frame-shift | ENSG00000257702 | ENST00000548978 | exon_skip_84780 | chr12:57720098-57720263 | -27.41 | -0.1713 | OS9 | ENST00000315970 | In-frame | ENSG00000257702 | ENST00000548978 | exon_skip_334374 | chr2:227347225-227347384 | -16.55 | -0.1313 | MFF | ENST00000353339 | In-frame | ENSG00000257702 | ENST00000548978 | exon_skip_141221 | chr16:3023473-3023530 | -14.10 | -0.2712 | HCFC1R1 | ENST00000574980 | In-frame |
-lncRNA and exonskipping events are negatively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | ENSG00000257702 | ENST00000548978 | exon_skip_371367 | chr3:9697710-9697866 | -22.96 | -0.1640 | MTMR14 | ENST00000296003 | In-frame |
lncRNA targets by miRNA. |
LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
RNA A-to-I editing events in lncRNA. |
LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
Edited-associated DElncRNAs in cancer. |
LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
lncRNA regulates differentially expressed genes by function as enhancer. |
LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation | ENSG00000257702 | ENST00000603175 | FRY | ENSG00000073910 | ENST00000380217 | -0.3420 | 1600 | - | GBM,KIRC,BLCA,KIRP | ENSG00000257702 | ENST00000603175 | CEP41 | ENSG00000106477 | ENST00000343969 | -0.1037 | 278 | CHOL | - | ENSG00000257702 | ENST00000603175 | CEP41 | ENSG00000106477 | ENST00000471201 | -0.1075 | 451 | CHOL | - | ENSG00000257702 | ENST00000603175 | CLIP1 | ENSG00000130779 | ENST00000540338 | -0.3219 | 1341 | KICH | BLCA | ENSG00000257702 | ENST00000603175 | CLIP1 | ENSG00000130779 | ENST00000541108 | -0.1308 | 261 | KICH | BLCA | ENSG00000257702 | ENST00000603175 | AMN1 | ENSG00000151743 | ENST00000536761 | -1.1025 | 5 | - | GBM | ENSG00000257702 | ENST00000603175 | AMN1 | ENSG00000151743 | ENST00000542781 | -0.2352 | 663 | - | GBM | ENSG00000257702 | ENST00000603175 | STRBP | ENSG00000165209 | ENST00000471564 | -0.1261 | 265 | KICH | - | ENSG00000257702 | ENST00000603175 | TPST2 | ENSG00000128294 | ENST00000445720 | -0.1524 | 527 | KICH | KIRP | ENSG00000257702 | ENST00000548978 | FRY | ENSG00000073910 | ENST00000380217 | -0.3420 | 1368 | - | GBM,KIRC,BLCA,KIRP | ENSG00000257702 | ENST00000548978 | CEP41 | ENSG00000106477 | ENST00000343969 | -0.1037 | 278 | CHOL | - | ENSG00000257702 | ENST00000548978 | CEP41 | ENSG00000106477 | ENST00000471201 | -0.1075 | 451 | CHOL | - | ENSG00000257702 | ENST00000548978 | CLIP1 | ENSG00000130779 | ENST00000540338 | -0.3219 | 1109 | KICH | BLCA | ENSG00000257702 | ENST00000548978 | CLIP1 | ENSG00000130779 | ENST00000541108 | -0.1308 | 261 | KICH | BLCA | ENSG00000257702 | ENST00000548978 | AMN1 | ENSG00000151743 | ENST00000536761 | -1.1025 | 5 | - | GBM | ENSG00000257702 | ENST00000548978 | AMN1 | ENSG00000151743 | ENST00000542781 | -0.2352 | 663 | - | GBM | ENSG00000257702 | ENST00000548978 | STRBP | ENSG00000165209 | ENST00000471564 | -0.1261 | 265 | KICH | - | ENSG00000257702 | ENST00000548978 | TPST2 | ENSG00000128294 | ENST00000445720 | -0.1524 | 527 | KICH | KIRP | ENSG00000257702 | ENST00000603175 | TFIP11 | ENSG00000100109 | ENST00000407431 | -0.3544 | 1600 | KICH | - | ENSG00000257702 | ENST00000603175 | TFIP11 | ENSG00000100109 | ENST00000407148 | -0.3544 | 1600 | KICH | - | ENSG00000257702 | ENST00000603175 | TFIP11 | ENSG00000100109 | ENST00000405938 | -0.8700 | 1600 | KICH | - | ENSG00000257702 | ENST00000603175 | SLC25A12 | ENSG00000115840 | ENST00000426896 | -0.1229 | 812 | CHOL | GBM,BLCA,HNSC | ENSG00000257702 | ENST00000603175 | RAP1GDS1 | ENSG00000138698 | ENST00000510870 | -0.1739 | 1353 | KICH | GBM | ENSG00000257702 | ENST00000603175 | RAP1GDS1 | ENSG00000138698 | ENST00000408900 | -0.1121 | 1204 | KICH | GBM | ENSG00000257702 | ENST00000603175 | RAP1GDS1 | ENSG00000138698 | ENST00000339360 | -0.1121 | 1204 | KICH | GBM | ENSG00000257702 | ENST00000548978 | TFIP11 | ENSG00000100109 | ENST00000407431 | -0.3544 | 1368 | KICH | - | ENSG00000257702 | ENST00000548978 | TFIP11 | ENSG00000100109 | ENST00000407148 | -0.3544 | 1368 | KICH | - | ENSG00000257702 | ENST00000548978 | TFIP11 | ENSG00000100109 | ENST00000405938 | -0.8700 | 1368 | KICH | - | ENSG00000257702 | ENST00000548978 | CLASP2 | ENSG00000163539 | ENST00000487553 | -0.1200 | 784 | - | GBM | ENSG00000257702 | ENST00000548978 | RAP1GDS1 | ENSG00000138698 | ENST00000510870 | -0.1739 | 1121 | KICH | GBM | ENSG00000257702 | ENST00000548978 | RAP1GDS1 | ENSG00000138698 | ENST00000408900 | -0.1121 | 972 | KICH | GBM | ENSG00000257702 | ENST00000548978 | RAP1GDS1 | ENSG00000138698 | ENST00000339360 | -0.1121 | 972 | KICH | GBM | ENSG00000257702 | ENST00000603175 | ATP6V1H | ENSG00000047249 | ENST00000519588 | -0.1148 | 310 | - | GBM,KIRC | ENSG00000257702 | ENST00000603175 | SLC25A40 | ENSG00000075303 | ENST00000444363 | -0.1829 | 1084 | KICH | - | ENSG00000257702 | ENST00000603175 | MKKS | ENSG00000125863 | ENST00000399054 | -0.1373 | 1702 | KICH | - | ENSG00000257702 | ENST00000603175 | GABARAPL1 | ENSG00000139112 | ENST00000539408 | -0.1704 | 341 | KICH | GBM,KIRC,BLCA,UCEC | ENSG00000257702 | ENST00000603175 | GABARAPL1 | ENSG00000139112 | ENST00000421801 | -0.1112 | 900 | KICH | GBM,KIRC,BLCA,UCEC | ENSG00000257702 | ENST00000603175 | GABARAPL1 | ENSG00000139112 | ENST00000544284 | -0.2565 | 565 | KICH | GBM,KIRC,BLCA,UCEC | ENSG00000257702 | ENST00000603175 | GABARAPL1 | ENSG00000139112 | ENST00000545047 | -0.1167 | 344 | KICH | GBM,KIRC,BLCA,UCEC | ENSG00000257702 | ENST00000603175 | GABARAPL1 | ENSG00000139112 | ENST00000541453 | -0.1385 | 590 | KICH | GBM,KIRC,BLCA,UCEC | ENSG00000257702 | ENST00000603175 | GABARAPL1 | ENSG00000139112 | ENST00000543602 | -0.1222 | 1178 | KICH | GBM,KIRC,BLCA,UCEC | ENSG00000257702 | ENST00000603175 | GABARAPL1 | ENSG00000139112 | ENST00000537201 | -0.1279 | 256 | KICH | GBM,KIRC,BLCA,UCEC | ENSG00000257702 | ENST00000603175 | GABARAPL1 | ENSG00000139112 | ENST00000545887 | -0.2829 | 546 | KICH | GBM,KIRC,BLCA,UCEC | ENSG00000257702 | ENST00000603175 | ATP5F1A | ENSG00000152234 | ENST00000592364 | -0.1083 | 241 | - | KIRC,HNSC | ENSG00000257702 | ENST00000603175 | SMARCA2 | ENSG00000080503 | ENST00000382186 | -2.2800 | 1213 | - | GBM,KIRP,UCEC | ENSG00000257702 | ENST00000603175 | PCCB | ENSG00000114054 | ENST00000251654 | -0.1248 | 336 | - | KIRC | ENSG00000257702 | ENST00000603175 | PCCB | ENSG00000114054 | ENST00000490504 | -0.1248 | 336 | - | KIRC | ENSG00000257702 | ENST00000603175 | PCCB | ENSG00000114054 | ENST00000483687 | -0.1248 | 336 | - | KIRC | ENSG00000257702 | ENST00000603175 | PCCB | ENSG00000114054 | ENST00000468777 | -0.1248 | 336 | - | KIRC | ENSG00000257702 | ENST00000603175 | PCCB | ENSG00000114054 | ENST00000462637 | -0.1248 | 336 | - | KIRC | ENSG00000257702 | ENST00000603175 | PCCB | ENSG00000114054 | ENST00000466072 | -0.1248 | 336 | - | KIRC | ENSG00000257702 | ENST00000603175 | PCCB | ENSG00000114054 | ENST00000482086 | -0.1248 | 336 | - | KIRC | ENSG00000257702 | ENST00000548978 | SLC25A5 | ENSG00000005022 | ENST00000317881 | -0.1238 | 724 | KICH | KIRC | ENSG00000257702 | ENST00000548978 | ATP6V1H | ENSG00000047249 | ENST00000522849 | -0.1128 | 632 | - | GBM,KIRC | ENSG00000257702 | ENST00000548978 | ATP6V1H | ENSG00000047249 | ENST00000519588 | -0.1148 | 310 | - | GBM,KIRC | ENSG00000257702 | ENST00000548978 | SLC25A40 | ENSG00000075303 | ENST00000444363 | -0.1829 | 852 | KICH | - | ENSG00000257702 | ENST00000548978 | MKKS | ENSG00000125863 | ENST00000399054 | -0.1373 | 1470 | KICH | - | ENSG00000257702 | ENST00000548978 | GABARAPL1 | ENSG00000139112 | ENST00000539408 | -0.1704 | 341 | KICH | GBM,KIRC,BLCA,UCEC | ENSG00000257702 | ENST00000548978 | GABARAPL1 | ENSG00000139112 | ENST00000544284 | -0.2565 | 565 | KICH | GBM,KIRC,BLCA,UCEC | ENSG00000257702 | ENST00000548978 | GABARAPL1 | ENSG00000139112 | ENST00000545047 | -0.1167 | 344 | KICH | GBM,KIRC,BLCA,UCEC | ENSG00000257702 | ENST00000548978 | GABARAPL1 | ENSG00000139112 | ENST00000541453 | -0.1385 | 590 | KICH | GBM,KIRC,BLCA,UCEC | ENSG00000257702 | ENST00000548978 | GABARAPL1 | ENSG00000139112 | ENST00000543602 | -0.1222 | 946 | KICH | GBM,KIRC,BLCA,UCEC | ENSG00000257702 | ENST00000548978 | GABARAPL1 | ENSG00000139112 | ENST00000537201 | -0.1279 | 256 | KICH | GBM,KIRC,BLCA,UCEC | ENSG00000257702 | ENST00000548978 | GABARAPL1 | ENSG00000139112 | ENST00000545887 | -0.2829 | 546 | KICH | GBM,KIRC,BLCA,UCEC | ENSG00000257702 | ENST00000548978 | ATP5F1A | ENSG00000152234 | ENST00000592364 | -0.1083 | 241 | - | KIRC,HNSC | ENSG00000257702 | ENST00000548978 | SMARCA2 | ENSG00000080503 | ENST00000382186 | -2.2800 | 981 | - | GBM,KIRP,UCEC | ENSG00000257702 | ENST00000548978 | PCCB | ENSG00000114054 | ENST00000251654 | -0.1248 | 336 | - | KIRC | ENSG00000257702 | ENST00000548978 | PCCB | ENSG00000114054 | ENST00000490504 | -0.1248 | 336 | - | KIRC | ENSG00000257702 | ENST00000548978 | PCCB | ENSG00000114054 | ENST00000483687 | -0.1248 | 336 | - | KIRC | ENSG00000257702 | ENST00000548978 | PCCB | ENSG00000114054 | ENST00000468777 | -0.1248 | 336 | - | KIRC | ENSG00000257702 | ENST00000548978 | PCCB | ENSG00000114054 | ENST00000462637 | -0.1248 | 336 | - | KIRC | ENSG00000257702 | ENST00000548978 | PCCB | ENSG00000114054 | ENST00000466072 | -0.1248 | 336 | - | KIRC | ENSG00000257702 | ENST00000548978 | PCCB | ENSG00000114054 | ENST00000482086 | -0.1248 | 336 | - | KIRC |
lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | ENSG00000257702.3 | ENST00000603175.1 | 152 | 191 | 646 | ENSG00000257702.3 | ENST00000548978.2 | 140 | 971 | 549 |
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