lncRNA targets the enhancer region and positively regulates the gene expression. |
lncRNA targets the promoter region and positively regulates the gene expression. |
lncRNA targets the promoter region and negatively regulates the gene expression. |
lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
Only predicted by lncTar | EHF,UBR5,ZNF28,NCOA2,DDX60,NFAT5,GLYR1,PUM1,REST,SF3A1,SP100,HBP1,PPARA,G3BP2,HELZ2,ADNP2,NCOA1 | Exist in public source | NA |
lncRNA targets the skipped exon region. | -lncRNA and exonskipping events are positively correlated. |
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LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | ENSG00000257698 | ENST00000553102 | exon_skip_26444 | chr1:46688352-46688544 | -18.62 | -0.1340 | EFCAB14 | ENST00000371933 | In-frame | ENSG00000257698 | ENST00000553102 | exon_skip_33516 | chr1:156938417-156938513 | -10.46 | -0.1308 | ARHGEF11 | ENST00000361409 | In-frame | ENSG00000257698 | ENST00000553102 | exon_skip_52231 | chr10:93392916-93392955 | -5.83 | -0.6478 | MYOF | ENST00000359263 | In-frame | ENSG00000257698 | ENST00000553102 | exon_skip_293641 | chr17:76091142-76091235 | -11.56 | -0.1541 | EXOC7 | ENST00000589210 | In-frame | ENSG00000257698 | ENST00000553102 | exon_skip_337919 | chr2:27445744-27445843 | -9.95 | -0.1345 | IFT172 | ENST00000260570 | In-frame | ENSG00000257698 | ENST00000553102 | exon_skip_451515 | chr6:41080810-41080897 | -11.52 | -0.1371 | NFYA | ENST00000341376 | In-frame | ENSG00000257698 | ENST00000553102 | exon_skip_460899 | chr6:85538837-85538864 | -5.46 | -0.3412 | SNX14 | ENST00000314673 | In-frame | ENSG00000257698 | ENST00000553102 | exon_skip_514511 | chrX:41555599-41555635 | -7.54 | -0.2513 | CASK | ENST00000378163 | In-frame | ENSG00000257698 | ENST00000553102 | exon_skip_332068 | chr2:191402631-191402718 | -10.23 | -0.1233 | MYO1B | ENST00000304164,ENST00000392318 | In-frame |
-lncRNA and exonskipping events are negatively correlated. |
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LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | ENSG00000257698 | ENST00000553102 | exon_skip_2091 | chr1:17634547-17634562 | -6.04 | -0.4314 | ARHGEF10L | ENST00000361221 | In-frame | ENSG00000257698 | ENST00000553102 | exon_skip_6419 | chr1:51756319-51756358 | -10.33 | -0.4132 | OSBPL9 | ENST00000428468 | In-frame | ENSG00000257698 | ENST00000553102 | exon_skip_11286 | chr1:155061903-155061975 | -16.36 | -0.3481 | ADAM15 | ENST00000356955 | In-frame | ENSG00000257698 | ENST00000553102 | exon_skip_14329 | chr1:178892229-178892307 | -12.66 | -0.2010 | RALGPS2 | ENST00000367635 | In-frame | ENSG00000257698 | ENST00000553102 | exon_skip_44853 | chr10:104010815-104010908 | -9.18 | -0.1177 | SLK | ENST00000369755 | In-frame | ENSG00000257698 | ENST00000553102 | exon_skip_59476 | chr11:57815914-57816001 | -13.00 | -0.1970 | CTNND1 | ENST00000399050 | In-frame | ENSG00000257698 | ENST00000553102 | exon_skip_114200 | chr14:73279280-73279424 | -17.14 | -0.1731 | NUMB | ENST00000355058,ENST00000555238 | In-frame | ENSG00000257698 | ENST00000553102 | exon_skip_114365 | chr14:74290026-74290118 | -10.32 | -0.1274 | ABCD4 | ENST00000356924 | Frame-shift | ENSG00000257698 | ENST00000553102 | exon_skip_114376 | chr14:74293153-74293248 | -11.74 | -0.1334 | ABCD4 | ENST00000356924 | Frame-shift | ENSG00000257698 | ENST00000553102 | exon_skip_132355 | chr16:1786756-1786955 | -23.26 | -0.1218 | NUBP2 | ENST00000262302 | Frame-shift | ENSG00000257698 | ENST00000553102 | exon_skip_148110 | chr17:4892401-4892512 | -13.90 | -0.1324 | MINK1 | ENST00000355280 | In-frame | ENSG00000257698 | ENST00000553102 | exon_skip_319223 | chr19:43526200-43526349 | -17.00 | -0.1604 | ETHE1 | ENST00000292147 | Frame-shift | ENSG00000257698 | ENST00000553102 | exon_skip_324294 | chr2:27774423-27774530 | -10.60 | -0.1582 | MRPL33 | ENST00000296102 | Frame-shift | ENSG00000257698 | ENST00000553102 | exon_skip_374375 | chr3:49675182-49675309 | -14.20 | -0.1797 | APEH | ENST00000296456 | Frame-shift | ENSG00000257698 | ENST00000553102 | exon_skip_375623 | chr3:58141857-58141929 | -10.19 | -0.1477 | FLNB | ENST00000295956 | In-frame | ENSG00000257698 | ENST00000553102 | exon_skip_386291 | chr3:108050577-108050602 | -5.18 | -0.3985 | CD47 | ENST00000361309 | Frame-shift | ENSG00000257698 | ENST00000553102 | exon_skip_423795 | chr4:55888887-55888932 | -8.17 | -0.2723 | EXOC1 | ENST00000346134,ENST00000381295 | In-frame | ENSG00000257698 | ENST00000553102 | exon_skip_439146 | chr5:154950820-154950938 | -11.54 | -0.1407 | MRPL22 | ENST00000523037 | Frame-shift | ENSG00000257698 | ENST00000553102 | exon_skip_476029 | chr7:65974918-65975071 | -13.77 | -0.1020 | GUSB | ENST00000304895 | In-frame | ENSG00000257698 | ENST00000553102 | exon_skip_481821 | chr8:22067084-22067159 | -10.47 | -0.2228 | DMTN | ENST00000265800,ENST00000358242,ENST00000432128,ENST00000523266 | In-frame | ENSG00000257698 | ENST00000553102 | exon_skip_488959 | chr8:27748494-27748598 | -8.08 | -0.1010 | CCDC25 | ENST00000356537 | Frame-shift | ENSG00000257698 | ENST00000546580 | exon_skip_41841 | chr10:68756272-68756483 | -20.06 | -0.1029 | CCAR1 | ENST00000265872 | Frame-shift | ENSG00000257698 | ENST00000553102 | exon_skip_66185 | chr11:124626472-124626609 | -13.14 | -0.1729 | TBRG1 | ENST00000441174 | Frame-shift | ENSG00000257698 | ENST00000553102 | exon_skip_66800 | chr11:130123611-130123779 | -15.65 | -0.1016 | APLP2 | ENST00000263574 | In-frame | ENSG00000257698 | ENST00000553102 | exon_skip_382458 | chr3:38131595-38131638 | -7.21 | -0.1759 | ACAA1 | ENST00000333167 | Frame-shift | ENSG00000257698 | ENST00000553102 | exon_skip_462160 | chr6:127316449-127316502 | -5.68 | -0.2470 | ECHDC1 | ENST00000531967 | Frame-shift | ENSG00000257698 | ENST00000553102 | exon_skip_466113 | chr7:48099669-48099787 | -12.68 | -0.3019 | UPP1 | ENST00000331803,ENST00000395564 | Frame-shift | ENSG00000257698 | ENST00000551421 | exon_skip_494000 | chr8:143922503-143925884 | -35.97 | -0.1160 | PLEC | ENST00000322810 | In-frame | ENSG00000257698 | ENST00000546580 | exon_skip_356468 | chr20:35280653-35280829 | -21.62 | -0.2514 | EIF6 | ENST00000374436,ENST00000374450 | Frame-shift | ENSG00000257698 | ENST00000553102 | exon_skip_5818 | chr1:45568484-45568684 | -16.20 | -0.1080 | AKR1A1 | ENST00000351829,ENST00000372070 | Frame-shift | ENSG00000257698 | ENST00000553102 | exon_skip_111870 | chr14:23566561-23566686 | -11.76 | -0.1023 | AP1G2 | ENST00000397120 | Frame-shift | ENSG00000257698 | ENST00000553102 | exon_skip_141221 | chr16:3023473-3023530 | -16.82 | -0.4102 | HCFC1R1 | ENST00000574980 | In-frame | ENSG00000257698 | ENST00000553102 | exon_skip_371547 | chr3:9928579-9928630 | -7.62 | -0.2458 | IL17RC | ENST00000295981 | In-frame | ENSG00000257698 | ENST00000553102 | exon_skip_303345 | chr19:17227839-17228005 | -15.26 | -0.1122 | OCEL1 | ENST00000215061 | Frame-shift | ENSG00000257698 | ENST00000553102 | exon_skip_41633 | chr10:50127159-50127222 | -8.07 | -0.1717 | WASHC2A | ENST00000282633 | In-frame |
lncRNA targets by miRNA. |
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LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source | ENSG00000257698 | hsa-mir-22 | ENST00000551421 | chr12:57931779-57931859 | 179.00 | -76.07 | 84 | NA | ENSG00000257698 | hsa-mir-22 | ENST00000551421 | chr12:57931648-57931723 | 164.00 | -70.87 | 79 | NA | ENSG00000257698 | hsa-mir-22 | ENST00000551421 | chr12:57931541-57931636 | 147.00 | -82.24 | 94 | NA | ENSG00000257698 | hsa-mir-22 | ENST00000547492 | chr12:57932169-57932249 | 179.00 | -76.07 | 84 | NA | ENSG00000257698 | hsa-mir-22 | ENST00000547492 | chr12:57931669-57931744 | 164.00 | -70.87 | 79 | NA | ENSG00000257698 | hsa-mir-22 | ENST00000547492 | chr12:57932061-57932140 | 146.00 | -64.04 | 76 | NA | ENSG00000257698 | hsa-mir-22 | ENST00000547492 | chr12:57931570-57931657 | 145.00 | -73.81 | 84 | NA | ENSG00000257698 | hsa-mir-22 | ENST00000546580 | chr12:57932019-57932099 | 179.00 | -76.07 | 84 | NA | ENSG00000257698 | hsa-mir-22 | ENST00000546580 | chr12:57931648-57931752 | 166.00 | -92.51 | 99 | NA | ENSG00000257698 | hsa-mir-22 | ENST00000546580 | chr12:57931804-57931879 | 164.00 | -70.87 | 79 | NA | ENSG00000257698 | hsa-mir-22 | ENST00000546580 | chr12:57931866-57931959 | 142.00 | -79.11 | 87 | NA | ENSG00000257698 | hsa-mir-22 | ENST00000553102 | chr12:57935422-57935501 | 169.00 | -71.46 | 80 | NA | ENSG00000257698 | hsa-mir-22 | ENST00000553102 | chr12:57935178-57935253 | 164.00 | -70.87 | 79 | NA | ENSG00000257698 | hsa-mir-22 | ENST00000553102 | chr12:57935675-57935759 | 149.00 | -68.28 | 84 | NA | ENSG00000257698 | hsa-mir-22 | ENST00000553102 | chr12:57935075-57935166 | 145.00 | -74.80 | 84 | NA | ENSG00000257698 | hsa-mir-22 | ENST00000553102 | chr12:57935240-57935333 | 142.00 | -79.11 | 87 | NA | ENSG00000257698 | hsa-mir-22 | ENST00000553102 | chr12:57935577-57935669 | 141.00 | -78.10 | 91 | NA |
RNA A-to-I editing events in lncRNA. |
LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
Edited-associated DElncRNAs in cancer. |
LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
lncRNA regulates differentially expressed genes by function as enhancer. |
LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | ENSG00000257698.1 | ENST00000551421.1 | 158 | 1250 | 774 | ENSG00000257698.1 | ENST00000547492.1 | 63 | 177 | 368 | ENSG00000257698.1 | ENST00000546580.1 | 124 | 731 | 357 | ENSG00000257698.1 | ENST00000553102.1 | 65 | 371 | 174 |
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