 lncRNA targets the enhancer region and positively regulates the gene expression. |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | ATF7,SON,AGFG1,DHX8,BAZ2A,QKI,SMAD5,REST,STAU1,FUBP1,HBP1,CSDE1,ZEB1,BBX,ZNF45,MEX3C,PHF20,FOXN3,G3BP1,MBNL1,SP2,MEF2D,SCAF4,SART3,STAT3,ARNT,SF3A1,BICC1,PRDM2,KLF7,DDX6,ADNP2,KAT7,SP1,SKI,ATF1,BPTF,ATF2,NCOA2,DDX3X,NR2C2,KRR1,SYNJ1,KLF13 | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
 |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | | ENSG00000257084 | ENST00000537269 | exon_skip_2091 | chr1:17634547-17634562 | -5.58 | -0.7971 | ARHGEF10L | ENST00000361221 | In-frame | | ENSG00000257084 | ENST00000537269 | exon_skip_48713 | chr10:34336198-34336243 | -10.31 | -0.2644 | PARD3 | ENST00000374789 | In-frame | | ENSG00000257084 | ENST00000537269 | exon_skip_59476 | chr11:57815914-57816001 | -12.36 | -0.1693 | CTNND1 | ENST00000399050 | In-frame | | ENSG00000257084 | ENST00000537269 | exon_skip_64939 | chr11:112230207-112230230 | -4.19 | -0.2619 | PTS | ENST00000280362 | Frame-shift | | ENSG00000257084 | ENST00000537269 | exon_skip_98384 | chr12:124327408-124327633 | -22.18 | -0.1004 | NCOR2 | ENST00000405201 | In-frame | | ENSG00000257084 | ENST00000537269 | exon_skip_114200 | chr14:73279280-73279424 | -16.95 | -0.1284 | NUMB | ENST00000355058,ENST00000555238 | In-frame | | ENSG00000257084 | ENST00000537269 | exon_skip_386291 | chr3:108050577-108050602 | -5.77 | -0.3037 | CD47 | ENST00000361309 | Frame-shift | | ENSG00000257084 | ENST00000537269 | exon_skip_423795 | chr4:55888887-55888932 | -8.13 | -0.2464 | EXOC1 | ENST00000346134,ENST00000381295 | In-frame | | ENSG00000257084 | ENST00000537269 | exon_skip_499771 | chr9:128592982-128593042 | -11.25 | -0.2083 | SPTAN1 | ENST00000372731 | In-frame |
| -lncRNA and exonskipping events are negatively correlated. |
 |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000257084 | ENST00000537269 | exon_skip_1717 | chr1:15721328-15721388 | -8.72 | -0.2565 | PLEKHM2 | ENST00000375799 | In-frame | | ENSG00000257084 | ENST00000537269 | exon_skip_21610 | chr1:9737497-9737554 | -14.75 | -0.3278 | CLSTN1 | ENST00000377298 | In-frame | | ENSG00000257084 | ENST00000537269 | exon_skip_21628 | chr1:9756480-9756510 | -9.18 | -0.3991 | CLSTN1 | ENST00000377298 | In-frame | | ENSG00000257084 | ENST00000537269 | exon_skip_33516 | chr1:156938417-156938513 | -13.54 | -0.1651 | ARHGEF11 | ENST00000361409 | In-frame | | ENSG00000257084 | ENST00000537269 | exon_skip_48327 | chr10:26771074-26771089 | -6.90 | -0.6273 | ABI1 | ENST00000376142 | In-frame | | ENSG00000257084 | ENST00000537269 | exon_skip_52231 | chr10:93392916-93392955 | -7.19 | -0.7989 | MYOF | ENST00000359263 | In-frame | | ENSG00000257084 | ENST00000537269 | exon_skip_90104 | chr12:10709907-10710114 | -23.89 | -0.1531 | YBX3 | ENST00000228251 | In-frame | | ENSG00000257084 | ENST00000537269 | exon_skip_287874 | chr17:29085603-29085648 | -6.31 | -0.3321 | MYO18A | ENST00000527372 | In-frame | | ENSG00000257084 | ENST00000537269 | exon_skip_337919 | chr2:27445744-27445843 | -13.79 | -0.2261 | IFT172 | ENST00000260570 | In-frame | | ENSG00000257084 | ENST00000537269 | exon_skip_361434 | chr21:25997359-25997416 | -9.92 | -0.1837 | APP | ENST00000346798 | In-frame | | ENSG00000257084 | ENST00000537269 | exon_skip_368285 | chr22:29329711-29329720 | -2.82 | -0.5640 | AP1B1 | ENST00000357586,ENST00000405198 | In-frame | | ENSG00000257084 | ENST00000537269 | exon_skip_376144 | chr3:100311832-100311877 | -8.95 | -0.2887 | TBC1D23 | ENST00000394144 | In-frame | | ENSG00000257084 | ENST00000537269 | exon_skip_380242 | chr3:186784961-186785101 | -14.29 | -0.1108 | EIF4A2 | ENST00000323963 | Frame-shift | | ENSG00000257084 | ENST00000537269 | exon_skip_382356 | chr3:37091466-37091538 | -7.15 | -0.1932 | LRRFIP2 | ENST00000336686 | In-frame | | ENSG00000257084 | ENST00000537269 | exon_skip_436488 | chr5:96726793-96726859 | -8.10 | -0.1421 | CAST | ENST00000341926,ENST00000395813 | In-frame | | ENSG00000257084 | ENST00000537269 | exon_skip_451515 | chr6:41080810-41080897 | -14.48 | -0.2785 | NFYA | ENST00000341376 | In-frame | | ENSG00000257084 | ENST00000537269 | exon_skip_514511 | chrX:41555599-41555635 | -6.54 | -0.2616 | CASK | ENST00000378163 | In-frame | | ENSG00000257084 | ENST00000537269 | exon_skip_515330 | chrX:65524563-65524614 | -6.93 | -0.1386 | LAS1L | ENST00000374811 | In-frame | | ENSG00000257084 | ENST00000537269 | exon_skip_305632 | chr19:35262545-35262692 | -17.38 | -0.1269 | LSR | ENST00000361790 | In-frame | | ENSG00000257084 | ENST00000537269 | exon_skip_3490 | chr1:28742402-28743986 | -31.88 | -0.1042 | YTHDF2 | ENST00000373812,ENST00000542507 | In-frame | | ENSG00000257084 | ENST00000537269 | exon_skip_80777 | chr12:26960514-26960628 | -11.46 | -0.4244 | FGFR1OP2 | ENST00000229395 | In-frame | | ENSG00000257084 | ENST00000537269 | exon_skip_370162 | chr22:42876887-42877010 | -16.12 | -0.1580 | PACSIN2 | ENST00000263246,ENST00000402229,ENST00000403744 | In-frame |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000257084.1 | ENST00000537269.1 | 120 | 330 | 692 |
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