lncRNAfunc Logo

Home

Download

Statistics

Landscape

Help

Contact

Center for Computational Systems Medicine
leaf

lncRNA summary

leaf

lncRNA structure and expression level

leaf

lncRNA-Protein interaction

leaf

lncRNA-DNA interaction

leaf

lncRNA-RNA interaction

leaf

Variants in lncRNA

leaf

lncRNAs regulate the target genes through functioning as enhancers

leaf

lncRNAs regulate the target genes through recruiting transcript factors

leaf

lncRNAs regulate the alternative splicing events through interacting with splicing factor

leaf

lncRNAs regulate mRNA through targeting the 3'-UTR region

leaf

lncRNAs regulate mRNA by competing with miRNA

leaf

lncRNA coding potential

lncRNA: ENSG00000256940

Summary for PPP1R14B-AS1

check button Gene summary

Gene informationEnsembl ID

ENSG00000256940

Gene symbol

PPP1R14B-AS1

Gene namePPP1R14B antisense RNA 1
HGNC

54233

Entrez ID

105369340

Gene typeantisense
Synonyms11q13.1|PPP1R14B-AS1|RP11-783K16.5
UniProtAcc

Top

Structure and expression level for PPP1R14B-AS1

check buttonDifferentially expressed gene analysis between cancer and normal samples.
DEG result
Ensembl IDBase meanlog2FC(AD/control)lfcSEStatP-valueAdjc.p-valueDEG direction Cancer type
ENSG000002569406.417758e+012.250412e+005.167020e-014.355338e+001.330000e-058.240000e-05UPGBM
ENSG000002569404.338222e+011.415969e+004.589893e-013.084973e+002.035708e-036.475219e-03UPCHOL
ENSG000002569404.902483e+011.153192e+001.920194e-016.005603e+001.910000e-095.690000e-09UPKIRC
ENSG000002569407.485492e+011.633154e+002.398000e-016.810483e+009.730000e-126.800000e-11UPKICH
ENSG000002569401.725284e+021.728396e+002.941134e-015.876632e+004.190000e-096.340000e-08UPBLCA
ENSG000002569401.824597e+023.463542e+007.206767e-014.805957e+001.540000e-063.640000e-05UPCESC
ENSG000002569407.933245e+011.857760e+001.996627e-019.304490e+001.350000e-203.450000e-19UPKIRP
ENSG000002569405.677828e+013.126191e+002.226722e-011.403943e+018.940000e-457.140000e-43UPUCEC
ENSG000002569401.088803e+023.649944e+001.982926e-011.840686e+011.160000e-756.400000e-74UPLUSC
ENSG000002569407.220174e+011.849718e+001.300385e-011.422439e+016.470000e-461.200000e-44UPBRCA
ENSG000002569406.582939e+013.494687e+001.877571e-011.861281e+012.530000e-774.570000e-75UPLUAD
ENSG000002569406.145843e+012.012082e+001.745874e-011.152479e+019.900000e-312.740000e-29UPCOAD
ENSG000002569403.250070e+011.433815e+002.105560e-016.809660e+009.780000e-127.400000e-11UPLIHC
ENSG000002569406.166618e+012.049671e+003.440358e-015.957726e+002.560000e-095.990000e-08UPREAD

check buttonCorrelation between lncRNAs and cancer stages.
LncRNA Ensembl IDCorrelationP-valueCancer TypeAdjc.p-value
ENSG000002569404.652251e-011.281516e-03CHOL2.088672e-03
ENSG000002569403.439626e-019.655449e-04KICH1.325774e-03
ENSG000002569403.458577e-011.108615e-12LIHC6.761335e-12
ENSG000002569403.791526e-011.793933e-21LUAD1.332981e-19
ENSG000002569403.747258e-015.234508e-21UCEC3.978226e-19

Top

lncRNA-Protein interaction for PPP1R14B-AS1

lncrna_protein
check buttonlncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).
LncRNA Ensembl IDLncRNA ENST IDLncRNA NameProtein Ensembl IDProtein NameCatRAPID ScoreLncpro ScoreUniPortIDGene SubtypePublic source

check buttonlncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).
LncRNA Ensembl IDLncRNA ENST IDLncRNA NameProtein Ensembl IDProtein NameCatRAPID ScoreLncpro ScoreUniPortIDGene SubtypePublic source

check buttonlncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).
LncRNA Ensembl IDLncRNA ENST IDLncRNA NameProtein Ensembl IDProtein NameCatRAPID ScoreLncpro ScoreUniPortIDGene SubtypePublic source

Top

lncRNA-DNA interaction for PPP1R14B-AS1

lncrna_DNA
check buttonlncRNA targets the enhancer region and positively regulates the gene expression.

check buttonlncRNA targets the promoter region and positively regulates the gene expression.

check buttonlncRNA targets the promoter region and negatively regulates the gene expression.

Top

lncRNA-RNA interaction for PPP1R14B-AS1

lncrna_RNA
check buttonlncRNA targets the 3'UTR region and negatively regulates the mRNA.
Only predicted by lncTar
CASD1,LRP6,CNOT4,ASB8,NF1,FAM168B,TNS3,MAML1,DSTYK,SYNGAP1,QKI,WDR11,ARID1A,ZFYVE16,XPO7,HCFC1,SENP7,ZMYND11,YPEL2,HIPK1,RBMX,QRICH1,SMARCC2,DCHS1,TACC1,SECISBP2L,UBR1,PPP1R12A,PI4KA,CHD8,MTR,TXNDC15,TAOK3,UBXN7,SMAD4,KIAA1109,PTPN11,CAPN7,KAT6B,TBC1D15,ZNF84,ELMO2,TANC1,ANKRD6,DCTN4,CREBBP,MAT2B,PBX1,PBRM1,ANKFY1,SRRM2,DNAJC14,SASH1,PUM1,KANSL1L,INTS3,NR2C2,BTBD9,SEC24B,LDLRAD4,ARID2,CREBRF,SACM1L,CABIN1,ZC3H11A,ATF7,TNS2,SON,KMT2D,PIK3C3,NBR1,EXOC7,R3HDM2,M6PR,AFDN,PHF3,MON2,CEP120,TRAK2,APAF1,ATP8B2,FBXO38,MAU2,TAF1,PREX1,ARID1B,BBX,RNF111,TP53BP1,PCNX1,PRRC2A,CYP2U1,WDR48,CDC42SE2,JADE2,TTC3,SNRK,KIDINS220,ZNF10,GIGYF2,ZFP90,REPS1,TFCP2,SMARCA2,RNF31,DAZAP2,ELP1,SESTD1,SART3,ARNT,TTC28,SEL1L,APPBP2,BRD3,ATF2,NCOA2,PTPRB,DNAJC18,ARHGEF9,BRD2,BCLAF1,DDX3X,TAOK1,SMC3,CBX7,RNF38,ASXL2,MPDZ,CDKN1B,ZFYVE9,SUGP2,PHF8,MAST3,DENND11,SMAD1,USP30,CUL3,PARD3B,CRY2,VPS54,TBC1D2B,BAZ2A,SETD5,SF3B1,PIKFYVE,SNRNP200,ADD1,FBXW8,ARSB,C2CD5,ROCK2,NUP214,MDC1,MAGI1,ARID4A,IPO8,PCM1,ASH1L,DYNC1LI2,MAP3K3,KBTBD4,GAPVD1,DENND4A,GNPTAB,TGFBRAP1,DENND1C,IQSEC1,FOXN3,MLLT6,SEC63,CERT1,WDR7,SENP6,TMEM131,ATP9A,EP400,RSBN1L,RBM23,MBTPS1,SMG6,TUB,SF3A1,ANXA6,INVS,PHF12,KIAA0232,KAT7,PXK,KIAA0586,ADCY6,IGF2R,FAM120B,DCAF7,DOCK9,SYNJ1,PLSCR4,MGAT4A,GPATCH8,CNOT8,ALMS1,EZH1,CHD2,GTF2A1,ALDH5A1,RABGAP1,SNX2,NEO1,MPHOSPH8,PHC1,PPIG,SOS1,SMAD5,ATE1,HBP1,CNST,KDM2B,SOS2,FAM160B1,ZEB1,GOSR1,HUWE1,HEATR5B,PKP4,PRKAR1A,RGL1,WAC,POLK,ABI2,EPC2,CTC1,DENND5B,CALCOCO1,IL6ST,DYRK1A,AFF1,ZZEF1,MECP2,MAP3K4,GCC2,CHD6,MRTFB,STAG1,DENND5A,BCOR,CDC14A,BDP1,RAD17,SYNRG,PHF10,FAM13B,MED23,TECPR2,VPS39,RALGAPA2,ZMYM3,HEATR5A,TAF3,C6orf89,HECTD4,MADD,CALCOCO2,SETD2,SEC24C,TXNDC16,MVB12B,SPG11,NEMF,INPP4A,FAM172A,EPC1,LATS1,DOCK1,MBTD1,RALGAPA1,CTDSP2,GLYR1,NCOR1,IBTK,SPOPL,TAPT1,FNBP1L,DOP1A,SCAF11,MPHOSPH9,SPATA6
Exist in public source
NA

check buttonlncRNA targets the skipped exon region.
-lncRNA and exonskipping events are positively correlated.
lncRNA and exonskipping events positive correlated
LncRNA Ensembl IDLncRNA ENST IDExon IDSkipped ExondGndGGene name with skipped exonTransID with skipped exonORF mutation
ENSG00000256940ENST00000538355exon_skip_467017chr7:74190246-74190306-9.40-0.2938EIF4HENST00000265753In-frame
ENSG00000256940ENST00000538355exon_skip_386291chr3:108050577-108050602-7.52-0.4424CD47ENST00000361309Frame-shift

-lncRNA and exonskipping events are negatively correlated.
lncRNA and exonskipping events negative correlated
LncRNA Ensembl IDLncRNA ENST IDExon IDSkipped ExondGndGGene name with skipped exonTransID with skipped exonLOF
ENSG00000256940ENST00000538355exon_skip_6457chr1:52083339-52083541-20.70-0.1176BTF3L4ENST00000313334Frame-shift
ENSG00000256940ENST00000538355exon_skip_21628chr1:9756480-9756510-6.37-0.2654CLSTN1ENST00000377298In-frame
ENSG00000256940ENST00000538355exon_skip_30682chr1:151310210-151310255-12.28-0.4723PI4KBENST00000368873In-frame
ENSG00000256940ENST00000538355exon_skip_110809chr14:105449358-105449409-13.29-0.6645MTA1ENST00000331320In-frame
ENSG00000256940ENST00000538355exon_skip_150854chr17:32366664-32366757-15.94-0.2344ZNF207ENST00000321233In-frame
ENSG00000256940ENST00000538355exon_skip_349689chr20:25221231-25221333-12.99-0.1804ENTPD6ENST00000376652In-frame
ENSG00000256940ENST00000538355exon_skip_48327chr10:26771074-26771089-4.46-0.3717ABI1ENST00000376142In-frame
ENSG00000256940ENST00000538355exon_skip_62282chr11:68050486-68050664-23.45-0.1574TCIRG1ENST00000265686Frame-shift
ENSG00000256940ENST00000538355exon_skip_357772chr20:47659398-47659452-7.73-0.1718SULF2ENST00000359930,ENST00000484875In-frame
ENSG00000256940ENST00000538355exon_skip_368285chr22:29329711-29329720-1.95-0.2167AP1B1ENST00000357586,ENST00000405198In-frame

check buttonlncRNA targets by miRNA.
LncRNA Ensembl IDmiRNA IDLncRNA ENST IDBinding site in lncRNAScoreEnergyAlign LenPublic source

Top

Variants for PPP1R14B-AS1

check buttonRNA A-to-I editing events in lncRNA.
LncRNAediting IDLncRNA Ensembl IDChromosomeEditing PositionStrandGene TypeGene NameTranscript IDTranscript TypeTranscript Name

check buttonEdited-associated DElncRNAs in cancer.
LncRNA Ensembl IDLncRNA IndexCancer TypeChr_Postion_StrandAVE1AVE2log2FCW-valueP-valueAdjc.p-valueChange

check buttonCorrelation between RNA A-to-I editing events's frequecy and lncRNA expression.
LncRNA Ensembl IDLncRNA IndexCorrelationP-valueAdjc.p-value

check buttonCis-expression quantitative trait loci(cis-eQTL) of lncRNA.
LncRNA Ensembl IDLncRNA NameSNP infoNumber of Positive corelated CancerPositive corelated CancerNumber of Negative corelated CancerNegative corelated Cancer

Top

lncRNAs regulate the target genes through functioning as enhancers

lncrna_enhancer
check buttonlncRNA regulates differentially expressed genes by function as enhancer.
LncRNA Ensembl IDPC Gene IDPC Gene NamePositive correlated cancersCancer with PC gene up-regulationCancer with PC gene down-regulation

Top

lncRNAs regulate the target genes through recruiting transcript factors

lncrna_TF
check buttonLncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).
lncRNA IDTF IDTF NamePCgene IDPCgene NameNumber of CancerCanaer Types

check buttonLncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).
lncRNA IDTF IDTF NamePCgene IDPCgene NameNumber of CancerCanaer Types

Top

lncRNAs regulate the alternative splicing event through interacting with splicing factor

lncrna_AS
check buttonLncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.
LncRNA Ensembl IDRBP IDRBP Gene NameExon Skipping IDSkipped ExonEX Gene NameEX Affected TransIDORF_annoCancer Type

check buttonLncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.
LncRNA Ensembl IDRBP IDRBP Gene NameExon Skipping IDSkipped ExonEX Gene NameEX Affected TransIDORF_annoCancer Type

Top

lncRNAs regulate mRNA through targeting the 3'-UTR region

lncrna_mRNA
check buttonlncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.
LncRNA Ensembl IDLncRNA ENST IDPC Gene NamePC Gene IDPC ENST IDdGnDGCancer with PC gene up-regulationCancer with PC gene Down-regulation
ENSG00000256940ENST00000544553RNF38ENSG00000137075ENST00000377877-0.106483-BLCA,CESC,UCEC
ENSG00000256940ENST00000544553DENND5AENSG00000184014ENST00000528725-0.10608-BLCA,CESC
ENSG00000256940ENST00000544553DENND5AENSG00000184014ENST00000533737-0.106020-BLCA,CESC
ENSG00000256940ENST00000538355RNF38ENSG00000137075ENST00000377877-0.104964-BLCA,CESC,UCEC
ENSG00000256940ENST00000538355DENND5AENSG00000184014ENST00000528725-0.133593-BLCA,CESC
ENSG00000256940ENST00000538355DENND5AENSG00000184014ENST00000533737-0.133593-BLCA,CESC
ENSG00000256940ENST00000538355DENND5AENSG00000184014ENST00000531747-0.11041-BLCA,CESC
ENSG00000256940ENST00000544553LRP6ENSG00000070018ENST00000543091-0.414892-CHOL,CESC
ENSG00000256940ENST00000544553TMEM131ENSG00000075568ENST00000418629-0.104778-COAD
ENSG00000256940ENST00000544553CDC14AENSG00000079335ENST00000361544-0.1265183-KIRP,LUSC,LUAD,COAD,READ
ENSG00000256940ENST00000544553MADDENSG00000110514ENST00000395344-0.11261-GBM
ENSG00000256940ENST00000544553MADDENSG00000110514ENST00000405573-0.10758-GBM
ENSG00000256940ENST00000538355LRP6ENSG00000070018ENST00000543091-0.4182132-CHOL,CESC
ENSG00000256940ENST00000538355TMEM131ENSG00000075568ENST00000418629-0.1760151-COAD
ENSG00000256940ENST00000538355CDC14AENSG00000079335ENST00000361544-0.1452130-KIRP,LUSC,LUAD,COAD,READ
ENSG00000256940ENST00000538355MADDENSG00000110514ENST00000395344-0.127333-GBM
ENSG00000256940ENST00000538355MADDENSG00000110514ENST00000405573-0.121225-GBM
ENSG00000256940ENST00000544553ALDH5A1ENSG00000112294ENST00000491546-0.1497308-GBM,CHOL,KIRC
ENSG00000256940ENST00000544553TXNDC15ENSG00000113621ENST00000507024-0.13921-CESC
ENSG00000256940ENST00000544553TRAK2ENSG00000115993ENST00000620184-0.11111-BLCA,LUSC,COAD,READ
ENSG00000256940ENST00000544553TRAK2ENSG00000115993ENST00000430254-0.11111-BLCA,LUSC,COAD,READ
ENSG00000256940ENST00000544553CASD1ENSG00000127995ENST00000443644-0.10211-GBM,CESC,COAD,READ
ENSG00000256940ENST00000544553CASD1ENSG00000127995ENST00000417387-0.2462206-GBM,CESC,COAD,READ
ENSG00000256940ENST00000544553SPATA6ENSG00000132122ENST00000487543-0.11391-KICH,LUSC
ENSG00000256940ENST00000544553IL6STENSG00000134352ENST00000502326-0.4192256-CHOL,BLCA,CESC,UCEC,LUSC,COAD,LIHC,READ
ENSG00000256940ENST00000544553PKP4ENSG00000144283ENST00000628904-0.10191-GBM,KICH
ENSG00000256940ENST00000544553PKP4ENSG00000144283ENST00000457109-0.1074102-GBM,KICH
ENSG00000256940ENST00000544553PKP4ENSG00000144283ENST00000481115-0.10031-GBM,KICH
ENSG00000256940ENST00000544553FAM160B1ENSG00000151553ENST00000369246-0.1841150-GBM,CHOL,CESC
ENSG00000256940ENST00000538355ALDH5A1ENSG00000112294ENST00000491546-0.1497388-GBM,CHOL,KIRC
ENSG00000256940ENST00000538355ALDH5A1ENSG00000112294ENST00000348925-0.1173115-GBM,CHOL,KIRC
ENSG00000256940ENST00000538355TXNDC15ENSG00000113621ENST00000509954-0.1194328-CESC
ENSG00000256940ENST00000538355CASD1ENSG00000127995ENST00000417387-0.2462286-GBM,CESC,COAD,READ
ENSG00000256940ENST00000538355IL6STENSG00000134352ENST00000502326-0.2209155-CHOL,BLCA,CESC,UCEC,LUSC,COAD,LIHC,READ
ENSG00000256940ENST00000538355RGL1ENSG00000143344ENST00000304685-0.11231-KICH,BLCA,CESC,UCEC,LUSC,BRCA,COAD,READ
ENSG00000256940ENST00000538355RGL1ENSG00000143344ENST00000360851-0.11231-KICH,BLCA,CESC,UCEC,LUSC,BRCA,COAD,READ
ENSG00000256940ENST00000538355ATP8B2ENSG00000143515ENST00000368487-0.1241297-KICH,BLCA,CESC,UCEC,COAD,READ
ENSG00000256940ENST00000538355ATP8B2ENSG00000143515ENST00000368489-0.10201-KICH,BLCA,CESC,UCEC,COAD,READ
ENSG00000256940ENST00000538355PKP4ENSG00000144283ENST00000628904-0.116864-GBM,KICH
ENSG00000256940ENST00000538355PKP4ENSG00000144283ENST00000457109-0.105932-GBM,KICH
ENSG00000256940ENST00000538355FAM160B1ENSG00000151553ENST00000369246-0.1841230-GBM,CHOL,CESC
ENSG00000256940ENST00000544553PXKENSG00000168297ENST00000383716-0.13191-GBM,CESC
ENSG00000256940ENST00000544553PXKENSG00000168297ENST00000463280-0.13191-GBM,CESC
ENSG00000256940ENST00000544553PXKENSG00000168297ENST00000493474-0.13191-GBM,CESC
ENSG00000256940ENST00000544553TAPT1ENSG00000169762ENST00000513833-0.11071-CHOL,CESC,LUSC,LIHC
ENSG00000256940ENST00000544553KIAA0232ENSG00000170871ENST00000508423-0.175073-GBM,BLCA,CESC
ENSG00000256940ENST00000544553HECTD4ENSG00000173064ENST00000548588-0.32141-GBM
ENSG00000256940ENST00000544553NF1ENSG00000196712ENST00000471572-0.1009161-GBM
ENSG00000256940ENST00000544553MVB12BENSG00000196814ENST00000361171-0.10461-GBM,CESC,LUSC,LUAD
ENSG00000256940ENST00000544553ANXA6ENSG00000197043ENST00000354546-0.11941-CHOL,BLCA,CESC,UCEC,LUSC
ENSG00000256940ENST00000544553ANXA6ENSG00000197043ENST00000523714-0.11941-CHOL,BLCA,CESC,UCEC,LUSC
ENSG00000256940ENST00000544553ANXA6ENSG00000197043ENST00000377751-0.11941-CHOL,BLCA,CESC,UCEC,LUSC
ENSG00000256940ENST00000544553ANXA6ENSG00000197043ENST00000521512-0.11941-CHOL,BLCA,CESC,UCEC,LUSC
ENSG00000256940ENST00000544553ANXA6ENSG00000197043ENST00000517677-0.11061-CHOL,BLCA,CESC,UCEC,LUSC
ENSG00000256940ENST00000544553SYNGAP1ENSG00000197283ENST00000629380-0.10711-GBM,CESC
ENSG00000256940ENST00000544553MLLT6ENSG00000275023ENST00000621332-0.10751-GBM
ENSG00000256940ENST00000538355KIAA0232ENSG00000170871ENST00000508423-0.175013-GBM,BLCA,CESC
ENSG00000256940ENST00000538355NF1ENSG00000196712ENST00000471572-0.1324156-GBM
ENSG00000256940ENST00000538355MVB12BENSG00000196814ENST00000361171-0.10781-GBM,CESC,LUSC,LUAD
ENSG00000256940ENST00000538355ANXA6ENSG00000197043ENST00000521512-0.103224-CHOL,BLCA,CESC,UCEC,LUSC
ENSG00000256940ENST00000544553LDLRAD4ENSG00000168675ENST00000587757-0.1279147-GBM,CHOL,UCEC
ENSG00000256940ENST00000544553LDLRAD4ENSG00000168675ENST00000592991-0.3403212-GBM,CHOL,UCEC
ENSG00000256940ENST00000544553DENND5BENSG00000170456ENST00000546299-0.107258-GBM,CHOL,UCEC,COAD
ENSG00000256940ENST00000544553ZMYND11ENSG00000015171ENST00000509513-0.174727-GBM,CESC
ENSG00000256940ENST00000544553ZMYND11ENSG00000015171ENST00000602682-0.2446167-GBM,CESC
ENSG00000256940ENST00000544553ZMYND11ENSG00000015171ENST00000558098-0.174727-GBM,CESC
ENSG00000256940ENST00000544553MGAT4AENSG00000071073ENST00000414521-0.10371-KICH,LUSC,COAD,READ
ENSG00000256940ENST00000544553MGAT4AENSG00000071073ENST00000409391-0.1959333-KICH,LUSC,COAD,READ
ENSG00000256940ENST00000544553SOS2ENSG00000100485ENST00000543680-0.461179-COAD,READ
ENSG00000256940ENST00000544553SOS2ENSG00000100485ENST00000556452-0.1061113-COAD,READ
ENSG00000256940ENST00000544553C2CD5ENSG00000111731ENST00000545552-0.14131-GBM
ENSG00000256940ENST00000544553C2CD5ENSG00000111731ENST00000542683-0.14921-GBM
ENSG00000256940ENST00000544553SASH1ENSG00000111961ENST00000367469-0.10931-GBM,KICH,LUSC,BRCA,LUAD,READ
ENSG00000256940ENST00000538355LDLRAD4ENSG00000168675ENST00000587757-0.1279227-GBM,CHOL,UCEC
ENSG00000256940ENST00000538355LDLRAD4ENSG00000168675ENST00000592991-0.3403292-GBM,CHOL,UCEC
ENSG00000256940ENST00000538355DENND5BENSG00000170456ENST00000536562-0.11941-GBM,CHOL,UCEC,COAD
ENSG00000256940ENST00000538355DENND5BENSG00000170456ENST00000546299-0.1258156-GBM,CHOL,UCEC,COAD
ENSG00000256940ENST00000538355ZMYND11ENSG00000015171ENST00000509513-0.1177107-GBM,CESC
ENSG00000256940ENST00000538355ZMYND11ENSG00000015171ENST00000602682-0.2446247-GBM,CESC
ENSG00000256940ENST00000538355ZMYND11ENSG00000015171ENST00000558098-0.1177107-GBM,CESC
ENSG00000256940ENST00000538355SOS2ENSG00000100485ENST00000543680-0.7660280-COAD,READ
ENSG00000256940ENST00000538355SOS2ENSG00000100485ENST00000556452-0.1237154-COAD,READ
ENSG00000256940ENST00000538355C2CD5ENSG00000111731ENST00000542676-0.55401-GBM
ENSG00000256940ENST00000538355C2CD5ENSG00000111731ENST00000542683-0.1038178-GBM
ENSG00000256940ENST00000544553PLSCR4ENSG00000114698ENST00000493382-0.5336144-CHOL,KICH,BLCA,UCEC,LUSC,BRCA,LUAD,COAD,LIHC,READ
ENSG00000256940ENST00000544553PARD3BENSG00000116117ENST00000415947-0.10331-KIRC,UCEC,LUSC,BRCA,LUAD,READ
ENSG00000256940ENST00000544553PTPRBENSG00000127329ENST00000550358-0.1173113-GBM,CHOL,KICH,CESC,KIRP,UCEC,LUSC,BRCA,LUAD
ENSG00000256940ENST00000544553PTPRBENSG00000127329ENST00000538708-0.1217245-GBM,CHOL,KICH,CESC,KIRP,UCEC,LUSC,BRCA,LUAD
ENSG00000256940ENST00000544553PTPRBENSG00000127329ENST00000550857-0.1217245-GBM,CHOL,KICH,CESC,KIRP,UCEC,LUSC,BRCA,LUAD
ENSG00000256940ENST00000544553PTPRBENSG00000127329ENST00000261266-0.1217245-GBM,CHOL,KICH,CESC,KIRP,UCEC,LUSC,BRCA,LUAD
ENSG00000256940ENST00000544553PTPRBENSG00000127329ENST00000547715-0.11541-GBM,CHOL,KICH,CESC,KIRP,UCEC,LUSC,BRCA,LUAD
ENSG00000256940ENST00000544553ARHGEF9ENSG00000131089ENST00000374878-0.10441-GBM,BLCA,READ
ENSG00000256940ENST00000544553ARHGEF9ENSG00000131089ENST00000374872-0.1789195-GBM,BLCA,READ
ENSG00000256940ENST00000544553ARHGEF9ENSG00000131089ENST00000624843-0.5444198-GBM,BLCA,READ
ENSG00000256940ENST00000544553FAM168BENSG00000152102ENST00000389915-0.237083-GBM,BLCA
ENSG00000256940ENST00000544553CNSTENSG00000162852ENST00000366511-0.53226-GBM,CHOL,BLCA,READ
ENSG00000256940ENST00000544553NEMFENSG00000165525ENST00000556672-0.144621-GBM
ENSG00000256940ENST00000544553AFF1ENSG00000172493ENST00000544085-0.4920125-READ
ENSG00000256940ENST00000544553DENND1CENSG00000205744ENST00000590867-0.10521-COAD
ENSG00000256940ENST00000544553DENND1CENSG00000205744ENST00000543576-0.8450296-COAD
ENSG00000256940ENST00000544553DENND1CENSG00000205744ENST00000586046-0.12531-COAD
ENSG00000256940ENST00000538355PLSCR4ENSG00000114698ENST00000446574-0.1116175-CHOL,KICH,BLCA,UCEC,LUSC,BRCA,LUAD,COAD,LIHC,READ
ENSG00000256940ENST00000538355PLSCR4ENSG00000114698ENST00000493382-0.5336224-CHOL,KICH,BLCA,UCEC,LUSC,BRCA,LUAD,COAD,LIHC,READ
ENSG00000256940ENST00000538355PTPRBENSG00000127329ENST00000550358-0.1019193-GBM,CHOL,KICH,CESC,KIRP,UCEC,LUSC,BRCA,LUAD
ENSG00000256940ENST00000538355PTPRBENSG00000127329ENST00000538708-0.1217325-GBM,CHOL,KICH,CESC,KIRP,UCEC,LUSC,BRCA,LUAD
ENSG00000256940ENST00000538355PTPRBENSG00000127329ENST00000550857-0.1217325-GBM,CHOL,KICH,CESC,KIRP,UCEC,LUSC,BRCA,LUAD
ENSG00000256940ENST00000538355PTPRBENSG00000127329ENST00000261266-0.1217325-GBM,CHOL,KICH,CESC,KIRP,UCEC,LUSC,BRCA,LUAD
ENSG00000256940ENST00000538355ARHGEF9ENSG00000131089ENST00000374872-0.1789275-GBM,BLCA,READ
ENSG00000256940ENST00000538355ARHGEF9ENSG00000131089ENST00000624843-0.5444278-GBM,BLCA,READ
ENSG00000256940ENST00000538355FAM168BENSG00000152102ENST00000389915-0.1332203-GBM,BLCA
ENSG00000256940ENST00000538355CNSTENSG00000162852ENST00000366511-0.68713-GBM,CHOL,BLCA,READ
ENSG00000256940ENST00000538355AFF1ENSG00000172493ENST00000544085-0.4920205-READ
ENSG00000256940ENST00000538355DENND1CENSG00000205744ENST00000543576-0.8450205-COAD
ENSG00000256940ENST00000538355DENND1CENSG00000205744ENST00000586046-0.1129110-COAD
ENSG00000256940ENST00000544553ZZEF1ENSG00000074755ENST00000381638-0.10411-COAD,READ
ENSG00000256940ENST00000544553ZZEF1ENSG00000074755ENST00000572699-0.11331-COAD,READ
ENSG00000256940ENST00000544553CBX7ENSG00000100307ENST00000216133-0.13391-GBM,BLCA,CESC,KIRP,UCEC,LUSC,BRCA,LUAD,COAD,READ
ENSG00000256940ENST00000544553CRY2ENSG00000121671ENST00000616080-0.1270104-GBM,CHOL,BLCA,CESC,UCEC,LUSC,BRCA,LUAD
ENSG00000256940ENST00000544553TNS3ENSG00000136205ENST00000442536-0.3030243-KIRP,LUSC,LUAD
ENSG00000256940ENST00000544553TNS3ENSG00000136205ENST00000458317-0.854313-KIRP,LUSC,LUAD
ENSG00000256940ENST00000538355ZZEF1ENSG00000074755ENST00000571436-0.10791-COAD,READ
ENSG00000256940ENST00000538355CRY2ENSG00000121671ENST00000616080-0.1368174-GBM,CHOL,BLCA,CESC,UCEC,LUSC,BRCA,LUAD
ENSG00000256940ENST00000538355TNS3ENSG00000136205ENST00000442536-0.3030323-KIRP,LUSC,LUAD
ENSG00000256940ENST00000538355TNS3ENSG00000136205ENST00000458317-0.5262201-KIRP,LUSC,LUAD
ENSG00000256940ENST00000544553HEATR5BENSG00000008869ENST00000425467-0.12283-GBM
ENSG00000256940ENST00000544553CALCOCO1ENSG00000012822ENST00000550804-0.123142-BLCA,CESC,UCEC,LUSC,BRCA,LUAD
ENSG00000256940ENST00000544553FAM13BENSG00000031003ENST00000425075-0.1294277-GBM,BLCA,CESC,LUSC,READ
ENSG00000256940ENST00000544553FAM13BENSG00000031003ENST00000420893-0.1317161-GBM,BLCA,CESC,LUSC,READ
ENSG00000256940ENST00000544553ARID4AENSG00000032219ENST00000395168-0.12351-CHOL,LUSC
ENSG00000256940ENST00000544553PPP1R12AENSG00000058272ENST00000550299-0.151572-BLCA,CESC,UCEC,READ
ENSG00000256940ENST00000544553PPP1R12AENSG00000058272ENST00000546369-0.1500298-BLCA,CESC,UCEC,READ
ENSG00000256940ENST00000544553TP53BP1ENSG00000067369ENST00000434561-0.1071168-GBM
ENSG00000256940ENST00000544553TP53BP1ENSG00000067369ENST00000467474-0.136644-GBM
ENSG00000256940ENST00000544553SMARCA2ENSG00000080503ENST00000382186-0.7243217-GBM,CHOL,KIRP,UCEC
ENSG00000256940ENST00000544553ADD1ENSG00000087274ENST00000398125-0.10081-CESC
ENSG00000256940ENST00000544553ADD1ENSG00000087274ENST00000446856-0.10081-CESC
ENSG00000256940ENST00000544553ADD1ENSG00000087274ENST00000513328-0.10081-CESC
ENSG00000256940ENST00000544553ADD1ENSG00000087274ENST00000503455-0.10081-CESC
ENSG00000256940ENST00000544553ADD1ENSG00000087274ENST00000355842-0.10081-CESC
ENSG00000256940ENST00000544553ADD1ENSG00000087274ENST00000536424-0.12011-CESC
ENSG00000256940ENST00000544553ADD1ENSG00000087274ENST00000541843-0.268298-CESC
ENSG00000256940ENST00000544553DOCK9ENSG00000088387ENST00000376460-0.11271-GBM,LUSC
ENSG00000256940ENST00000544553DOCK9ENSG00000088387ENST00000627024-0.11811-GBM,LUSC
ENSG00000256940ENST00000544553DOCK9ENSG00000088387ENST00000427887-0.11811-GBM,LUSC
ENSG00000256940ENST00000544553TTC28ENSG00000100154ENST00000442232-0.156158-BLCA,CESC,LUSC,BRCA,LUAD
ENSG00000256940ENST00000544553PCNX1ENSG00000100731ENST00000555780-0.5200365-GBM,BRCA
ENSG00000256940ENST00000544553MPDZENSG00000107186ENST00000536827-0.2294132-CHOL,BLCA,UCEC,LUSC,BRCA,LIHC
ENSG00000256940ENST00000544553MPDZENSG00000107186ENST00000447879-0.2294133-CHOL,BLCA,UCEC,LUSC,BRCA,LIHC
ENSG00000256940ENST00000538355HEATR5BENSG00000008869ENST00000425467-0.115611-GBM
ENSG00000256940ENST00000538355FAM13BENSG00000031003ENST00000425075-0.1761167-GBM,BLCA,CESC,LUSC,READ
ENSG00000256940ENST00000538355FAM13BENSG00000031003ENST00000420893-0.1761167-GBM,BLCA,CESC,LUSC,READ
ENSG00000256940ENST00000538355PPP1R12AENSG00000058272ENST00000546369-0.1500378-BLCA,CESC,UCEC,READ
ENSG00000256940ENST00000538355TP53BP1ENSG00000067369ENST00000434561-0.1071248-GBM
ENSG00000256940ENST00000538355TP53BP1ENSG00000067369ENST00000467474-0.11041-GBM
ENSG00000256940ENST00000538355SMARCA2ENSG00000080503ENST00000382186-0.7243297-GBM,CHOL,KIRP,UCEC
ENSG00000256940ENST00000538355DOP1AENSG00000083097ENST00000349129-0.1027266-GBM
ENSG00000256940ENST00000538355ADD1ENSG00000087274ENST00000536424-0.115396-CESC
ENSG00000256940ENST00000538355ADD1ENSG00000087274ENST00000541843-0.2257217-CESC
ENSG00000256940ENST00000538355MPDZENSG00000107186ENST00000536827-0.2294212-CHOL,BLCA,UCEC,LUSC,BRCA,LIHC
ENSG00000256940ENST00000538355MPDZENSG00000107186ENST00000447879-0.2294213-CHOL,BLCA,UCEC,LUSC,BRCA,LIHC
ENSG00000256940ENST00000544553ATP9AENSG00000054793ENST00000311637-0.10371-GBM
ENSG00000256940ENST00000544553ATP9AENSG00000054793ENST00000338821-0.10371-GBM
ENSG00000256940ENST00000544553TACC1ENSG00000147526ENST00000520340-0.1233117-GBM,BLCA,CESC,KIRP,UCEC,LUSC,BRCA,LUAD,READ
ENSG00000256940ENST00000544553TACC1ENSG00000147526ENST00000518415-0.1261121-GBM,BLCA,CESC,KIRP,UCEC,LUSC,BRCA,LUAD,READ
ENSG00000256940ENST00000544553TACC1ENSG00000147526ENST00000521866-0.1261111-GBM,BLCA,CESC,KIRP,UCEC,LUSC,BRCA,LUAD,READ
ENSG00000256940ENST00000544553DCHS1ENSG00000166341ENST00000299441-0.1020125-BLCA,CESC,KIRP,UCEC,LUSC,LUAD
ENSG00000256940ENST00000538355TECPR2ENSG00000196663ENST00000359520-0.10671-GBM
ENSG00000256940ENST00000538355TNS2ENSG00000111077ENST00000546772-0.12881-CHOL,BLCA,CESC,KIRP,UCEC,LUSC,BRCA,LUAD,COAD,READ
ENSG00000256940ENST00000538355TACC1ENSG00000147526ENST00000520340-0.1233197-GBM,BLCA,CESC,KIRP,UCEC,LUSC,BRCA,LUAD,READ
ENSG00000256940ENST00000538355TACC1ENSG00000147526ENST00000518415-0.106874-GBM,BLCA,CESC,KIRP,UCEC,LUSC,BRCA,LUAD,READ
ENSG00000256940ENST00000538355TACC1ENSG00000147526ENST00000521866-0.106864-GBM,BLCA,CESC,KIRP,UCEC,LUSC,BRCA,LUAD,READ
ENSG00000256940ENST00000544553TTC3ENSG00000182670ENST00000540756-0.32131-GBM
ENSG00000256940ENST00000544553TTC3ENSG00000182670ENST00000428693-0.2196176-GBM
ENSG00000256940ENST00000544553BDP1ENSG00000145734ENST00000380675-0.1160121-GBM
ENSG00000256940ENST00000544553TUBENSG00000166402ENST00000534099-0.160752-GBM,UCEC
ENSG00000256940ENST00000544553TUBENSG00000166402ENST00000305253-0.10461-GBM,UCEC
ENSG00000256940ENST00000544553TUBENSG00000166402ENST00000299506-0.14321-GBM,UCEC
ENSG00000256940ENST00000544553KMT2DENSG00000167548ENST00000301067-0.10341-GBM
ENSG00000256940ENST00000544553KMT2DENSG00000167548ENST00000526209-0.141854-GBM
ENSG00000256940ENST00000544553RALGAPA1ENSG00000174373ENST00000382366-0.1764273-GBM
ENSG00000256940ENST00000544553RALGAPA1ENSG00000174373ENST00000553892-0.657145-GBM
ENSG00000256940ENST00000544553TANC1ENSG00000115183ENST00000454300-0.10251-KIRP
ENSG00000256940ENST00000538355TTC3ENSG00000182670ENST00000540756-0.237149-GBM
ENSG00000256940ENST00000538355TTC3ENSG00000182670ENST00000428693-0.2572167-GBM
ENSG00000256940ENST00000538355DENND11ENSG00000257093ENST00000536163-0.10061-GBM
ENSG00000256940ENST00000538355BDP1ENSG00000145734ENST00000380675-0.1281201-GBM
ENSG00000256940ENST00000538355TUBENSG00000166402ENST00000534099-0.1231106-GBM,UCEC
ENSG00000256940ENST00000538355KMT2DENSG00000167548ENST00000526209-0.1304177-GBM
ENSG00000256940ENST00000538355RALGAPA1ENSG00000174373ENST00000382366-0.1764353-GBM
ENSG00000256940ENST00000538355RALGAPA1ENSG00000174373ENST00000553892-0.5250322-GBM
ENSG00000256940ENST00000544553MPDZENSG00000107186ENST00000546205-0.990054-CHOL,BLCA,UCEC,LUSC,BRCA,LIHC
ENSG00000256940ENST00000544553EZH1ENSG00000108799ENST00000428826-0.10011-GBM,CESC,UCEC,BRCA
ENSG00000256940ENST00000544553EZH1ENSG00000108799ENST00000415827-0.10011-GBM,CESC,UCEC,BRCA
ENSG00000256940ENST00000544553EZH1ENSG00000108799ENST00000585893-0.22121-GBM,CESC,UCEC,BRCA
ENSG00000256940ENST00000544553EZH1ENSG00000108799ENST00000590078-0.22121-GBM,CESC,UCEC,BRCA
ENSG00000256940ENST00000544553EZH1ENSG00000108799ENST00000586935-0.123721-GBM,CESC,UCEC,BRCA
ENSG00000256940ENST00000544553USP30ENSG00000135093ENST00000392784-0.11891-CHOL
ENSG00000256940ENST00000544553ABI2ENSG00000138443ENST00000425253-0.14831-GBM,CESC
ENSG00000256940ENST00000538355MPDZENSG00000107186ENST00000546205-0.325770-CHOL,BLCA,UCEC,LUSC,BRCA,LIHC
ENSG00000256940ENST00000538355MPDZENSG00000107186ENST00000437441-0.10591-CHOL,BLCA,UCEC,LUSC,BRCA,LIHC
ENSG00000256940ENST00000538355EZH1ENSG00000108799ENST00000592743-0.125666-GBM,CESC,UCEC,BRCA
ENSG00000256940ENST00000538355EZH1ENSG00000108799ENST00000585893-0.1454126-GBM,CESC,UCEC,BRCA
ENSG00000256940ENST00000538355EZH1ENSG00000108799ENST00000590078-0.1454126-GBM,CESC,UCEC,BRCA
ENSG00000256940ENST00000538355EZH1ENSG00000108799ENST00000586935-0.121680-GBM,CESC,UCEC,BRCA
ENSG00000256940ENST00000538355ABI2ENSG00000138443ENST00000447762-0.10351-GBM,CESC
ENSG00000256940ENST00000538355ABI2ENSG00000138443ENST00000430418-0.103061-GBM,CESC
ENSG00000256940ENST00000544553ABI2ENSG00000138443ENST00000454023-0.6926113-GBM,CESC
ENSG00000256940ENST00000544553KIAA1109ENSG00000138688ENST00000419325-0.1870281-GBM,LUSC
ENSG00000256940ENST00000544553KIAA1109ENSG00000138688ENST00000442707-0.5050357-GBM,LUSC
ENSG00000256940ENST00000544553SEC24BENSG00000138802ENST00000399100-0.4657379-CHOL,LIHC
ENSG00000256940ENST00000544553MAGI1ENSG00000151276ENST00000330909-0.10891-GBM,LUSC,LUAD
ENSG00000256940ENST00000544553MAGI1ENSG00000151276ENST00000611645-0.10891-GBM,LUSC,LUAD
ENSG00000256940ENST00000544553MAGI1ENSG00000151276ENST00000497477-0.122854-GBM,LUSC,LUAD
ENSG00000256940ENST00000544553ZFYVE9ENSG00000157077ENST00000357206-0.10521-GBM,KIRP,LUAD
ENSG00000256940ENST00000544553CEP120ENSG00000168944ENST00000515110-0.404811-UCEC
ENSG00000256940ENST00000538355ABI2ENSG00000138443ENST00000454023-0.6926193-GBM,CESC
ENSG00000256940ENST00000538355KIAA1109ENSG00000138688ENST00000419325-0.1870361-GBM,LUSC
ENSG00000256940ENST00000538355KIAA1109ENSG00000138688ENST00000442707-0.4650171-GBM,LUSC
ENSG00000256940ENST00000538355SEC24BENSG00000138802ENST00000504968-0.25171-CHOL,LIHC
ENSG00000256940ENST00000538355SEC24BENSG00000138802ENST00000399100-0.3660271-CHOL,LIHC
ENSG00000256940ENST00000538355MAGI1ENSG00000151276ENST00000497477-0.1199193-GBM,LUSC,LUAD
ENSG00000256940ENST00000538355CYP2U1ENSG00000155016ENST00000508453-0.1193174-CHOL,BLCA,UCEC,LUSC,BRCA
ENSG00000256940ENST00000538355CREBRFENSG00000164463ENST00000520420-0.1200231-BLCA,CESC,UCEC,LUSC,READ
ENSG00000256940ENST00000538355CEP120ENSG00000168944ENST00000515110-0.2516178-UCEC
ENSG00000256940ENST00000544553MPHOSPH8ENSG00000196199ENST00000414242-0.334364-GBM

Top

lncRNAs regulate mRNA by competing with miRNA

lncrna_miRNA
check buttonlncRNA regulates mRNA by competing the miRNA binding site with mRNA.
LncRNA Ensembl IDlncRNA-miRNA-mRNACancer Types

Top

lncRNA coding potential

check buttonORFfinder result for the gencode.v22.lncRNA.transcript.fa.
lncRNA Ensembl IDlncRNA ENST IDlength(AA)start at transcriptend at transcript
ENSG00000256940.1ENST00000544553.17016225
ENSG00000256940.1ENST00000538355.142386258