lncRNA targets the enhancer region and positively regulates the gene expression. |
Only predicted by TDF | SLIRP,GLI4,THAP4,MYPOP,IRF3,CIRBP,DDX56,IMP3,TRUB2,CENPB,LARP6,SNRPA,LSM3,LSM5,EIF3G,CENPT,MRM1,SUGP1,PUF60,DBP,LSM4,RBM4B,CREB3,RNPS1,ERAL1,NR2F6,CWC15,SURF6,CPSF4,PPIE,SF3B6,NELFE,USF1,CXXC1,CSTF1,THYN1,DEAF1,DDX49,HSF4,THOC6,RBM42,ILF2,ZNF48,TIGD1,MBD3,THAP3,UNC50,APEX1,FIZ1,PREB,ZNF18,PCGF2,C1D,HMGN3,CPSF3,KHDC1,NOL3,THAP8,LSM2,PIN1,LSM1,SMYD3,DDX41,XPA,THOC7,RALY,NR1H2 | Exist in public source | NA |
lncRNA targets the promoter region and positively regulates the gene expression. |
lncRNA targets the promoter region and negatively regulates the gene expression. |
lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
Only predicted by lncTar | UBR5,ATF7,CELF2,BAZ2A,REST,HBP1,ZEB1,CPEB4,MLXIP,ZNF28,FOXN3,IREB2,SART3,KLF7,DDX6,FOXP1,NCOA2,CELF1,SRRM2,DDX3X,PUM1,KDM2A,KLF13 | Exist in public source | NA |
lncRNA targets the skipped exon region. | -lncRNA and exonskipping events are positively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
-lncRNA and exonskipping events are negatively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | ENSG00000256073 | ENST00000534991 | exon_skip_324294 | chr2:27774423-27774530 | -12.77 | -0.1330 | MRPL33 | ENST00000296102 | Frame-shift | ENSG00000256073 | ENST00000534991 | exon_skip_6419 | chr1:51756319-51756358 | -9.14 | -0.2948 | OSBPL9 | ENST00000428468 | In-frame | ENSG00000256073 | ENST00000534991 | exon_skip_291984 | chr17:59119318-59119495 | -15.59 | -0.1321 | SKA2 | ENST00000330137 | In-frame |
lncRNA targets by miRNA. |
LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
RNA A-to-I editing events in lncRNA. |
LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
Edited-associated DElncRNAs in cancer. |
LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
lncRNA regulates differentially expressed genes by function as enhancer. |
LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | ENSG00000256073.3 | ENST00000534991.3 | 78 | 227 | 463 |
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