 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | TRIR,MRPL52,BLOC1S1,SCNM1,C11orf1,ARL16,TCEA2,ZBTB8OS,ZSWIM9,GLI4,EMG1,TMEM234,NMRAL1,SH2B1,IRF3,CIRBP,STK11,SNRNP25,C1orf159,DDX56,PET100,FAM98C,MZF1,CHTF18,WDR83OS,C7orf50,PPOX,CDPF1,RRNAD1,KAT8,SNF8,BCS1L,ACD,MKS1,RP11-523H20.5,C1orf35,XAB2,TRAPPC12,MUTYH,BCL7C,MRPL28,ZCWPW1,LIN37,SNRPA,SMUG1,HDAC11,MSANTD2,IFT27,RECQL5,GFER,HIRIP3,PHKG2,NARF,PMF1,NUBP2,LRRC75B,RFXANK,ACBD6,LAMTOR2,RAB13,NT5C3B,CENPT,COQ4,COPS9,DRC3,ZMAT5,SUGP1,SPG7,STX10,ARMC5,C19orf44,IQCD,LSM4,ACBD4,LRRC23,DNAJB2,ECHDC2,PLA2G6,TAF1C,COX19,CWC15,ENDOV,AAAS,PSENEN,METTL17,PPIE,BAD,NELFE,CBY1,WDR83,METTL23,EXD3,USF1,CXXC1,RABL2A,NASP,DHPS,PCED1A,BABAM1,ACYP1,NDUFB7,MVB12A,LMF1,CFAP298,HEXIM2,DDX49,INO80E,THOC6,ANKS3,ATRAID,YJU2,RASSF7,ZBED8,DENND6B,PEX11G,CCHCR1,PRMT7,ZFYVE19,FAM228B,TMEM160,COX4I1,SGF29,NEK8,TIGD1,DDX51,ESS2,NDUFC1,THAP3,PSMB3,TSEN54,PSPN,ODF3B,ATG4B,HEMK1,LMNTD2,CCDC191,SPATA33,MCRIP2,PCSK4,TMA7,PFDN5,CCS,PELP1,C19orf25,SETD4,FAM234A,HMGN3,MYG1,DUSP28,NAT9,POP5,BOLA1,CZIB,RPS19BP1,YPEL3,SAP30BP,NTHL1,ARHGAP33,MYL5,METTL26,RPA3,C14orf93,CCDC24,UBXN11,CCDC12,CEP131,TOMM7,HINFP,S100A13,CERS5,GPS1,NCAPH2,SIRT6,COPRS,HSPB11,TRIOBP,CCDC57,ENKD1,FKBP2,IQCC | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| Only predicted by TDF | | C14orf93,HEMK1,MZF1,C19orf25,OCEL1,TRIOBP,C19orf44,DHPS,INO80E,DMAP1,FKBPL,BABAM1,TSEN54,YPEL3,NENF,RRNAD1,SETD4,NT5C,TMA7,FAM98C,TMEM160,THAP3,PPOX,NMRAL1,CIRBP,ZCWPW1,HIRIP3 | | Exist in public source | | NA |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | CNOT1,RNF4,RNF123,NIPA2,CLTC,DNAJC14,BECN1,PSMD1,SCYL2,ATP11B,KIAA0100,PNPO,EDEM1,EIF4G2,SLC36A1,VAMP7,WDR44,SEC23A | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation | | ENSG00000255337 | ENSG00000004777 | ARHGAP33 | CHOL,KIRC,KIRP,LIHC,THCA | KIRC,LIHC | | | ENSG00000255337 | ENSG00000064490 | RFXANK | CHOL,DLBC,KIRP,LIHC,PRAD | LIHC | | | ENSG00000255337 | ENSG00000115257 | PCSK4 | CHOL,KIRC,KIRP,LGG,THCA | KIRP | | | ENSG00000255337 | ENSG00000124074 | ENKD1 | CHOL,KIRC,KIRP,LGG,PRAD,THCA,THYM | KIRP | | | ENSG00000255337 | ENSG00000127586 | CHTF18 | CHOL,KIRC,KIRP,LIHC,PRAD | KIRC,KIRP,LIHC | | | ENSG00000255337 | ENSG00000130731 | METTL26 | CHOL,DLBC,KIRP,LIHC,PRAD | KIRP | | | ENSG00000255337 | ENSG00000143793 | C1orf35 | CHOL,DLBC,KIRC,KIRP,LIHC,PRAD | LIHC | | | ENSG00000255337 | ENSG00000158062 | UBXN11 | CHOL,KIRC,KIRP,LGG,PRAD,THCA | KIRC,KIRP | | | ENSG00000255337 | ENSG00000163156 | SCNM1 | CHOL,KIRC,KIRP,LIHC,PRAD | LIHC | | | ENSG00000255337 | ENSG00000167930 | FAM234A | CHOL,DLBC,KIRP,PRAD,THYM | KIRP | | | ENSG00000255337 | ENSG00000168096 | ANKS3 | CHOL,KIRC,KIRP,LIHC,PRAD,THCA,THYM | KIRP,LIHC | | | ENSG00000255337 | ENSG00000169592 | INO80E | CHOL,DLBC,KIRC,KIRP,PRAD,THCA | KIRC | | | ENSG00000255337 | ENSG00000177989 | ODF3B | CHOL,KIRC,KIRP,LGG,PRAD,THYM | KIRC,KIRP | | | ENSG00000255337 | ENSG00000178026 | LRRC75B | CHOL,KIRC,KIRP,PRAD,THCA,THYM | KIRC,KIRP | | | ENSG00000255337 | ENSG00000185522 | LMNTD2 | CHOL,DLBC,KIRC,KIRP,LIHC,THCA | KIRC,KIRP | | | ENSG00000255337 | ENSG00000204536 | CCHCR1 | CHOL,DLBC,KIRC,KIRP,LIHC | LIHC | | | ENSG00000255337 | ENSG00000215375 | MYL5 | CHOL,DLBC,KIRC,KIRP,LGG,PRAD,THCA | KIRC,KIRP | | | ENSG00000255337 | ENSG00000221886 | ZBED8 | CHOL,KIRC,LIHC,OV,THCA | LIHC | | | ENSG00000255337 | ENSG00000230124 | ACBD6 | CHOL,DLBC,KIRC,LIHC,PRAD | LIHC | | | ENSG00000255337 | ENSG00000267796 | LIN37 | CHOL,KIRC,KIRP,LIHC,PRAD,THCA | KIRC | | | ENSG00000255337 | ENSG00000277791 | PSMB3 | CHOL,DLBC,KIRP,LIHC,PRAD | KIRP | | | ENSG00000255337 | ENSG00000010626 | LRRC23 | DLBC,KIRC,KIRP,LGG,PRAD,THCA | KIRP | | | ENSG00000255337 | ENSG00000182173 | TSEN54 | DLBC,KIRC,KIRP,LIHC,PRAD | LIHC | | | ENSG00000255337 | ENSG00000109065 | NAT9 | KIRC,KIRP,LIHC,PRAD,THCA,THYM | LIHC | |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000255337.1 | ENST00000528717.1 | 88 | 233 | 499 |
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