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lncRNA: ENSG00000255320

Summary for RP11-755F10.1

Gene summary

Gene information	Ensembl ID	ENSG00000255320
	Gene symbol	RP11-755F10.1
	Gene name
	HGNC
	Entrez ID
	Gene type	antisense
	Synonyms
	UniProtAcc

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Structure and expression level for RP11-755F10.1

AS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure.

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000255320	5.623238e+01	1.614480e+00	3.136608e-01	5.147216e+00	2.640000e-07	1.940000e-06	UP	CHOL
ENSG00000255320	1.247895e+02	1.269534e+00	1.651690e-01	7.686278e+00	1.510000e-14	1.440000e-13	UP	KICH

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000255320	4.245213e-01	3.655029e-03	CHOL	4.973915e-03
ENSG00000255320	3.280427e-01	1.699151e-03	KICH	2.241433e-03

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lncRNA-Protein interaction for RP11-755F10.1

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000255320	ENST00000531086	RP11-755F10.1	ENSG00000025293	PHF20	26.96	93.4128	Q9BVI0	TF,Epi	NA
ENSG00000255320	ENST00000531086	RP11-755F10.1	ENSG00000100888	CHD8	22.17	95.3236	Q9HCK8	Epi	NA
ENSG00000255320	ENST00000531086	RP11-755F10.1	ENSG00000171681	ATF7IP	21.78	93.4183	Q6VMQ6	Epi	NA
ENSG00000255320	ENST00000531086	RP11-755F10.1	ENSG00000181555	SETD2	21.71	94.2185	Q9BYW2	Epi	NA
ENSG00000255320	ENST00000531086	RP11-755F10.1	ENSG00000005483	KMT2E	20.95	95.8158	Q8IZD2	Epi	NA
ENSG00000255320	ENST00000531086	RP11-755F10.1	ENSG00000108557	RAI1	20.38	91.4123	Q7Z5J4	Epi	NA
ENSG00000255320	ENST00000531086	RP11-755F10.1	ENSG00000198730	CTR9	19.43	91.6516	Q6PD62	Epi	NA
ENSG00000255320	ENST00000531086	RP11-755F10.1	ENSG00000177200	CHD9	19.3	95.3029	Q3L8U1	Epi	NA
ENSG00000255320	ENST00000531086	RP11-755F10.1	ENSG00000073614	KDM5A	19.24	92.3687	P29375	Epi	NA
ENSG00000255320	ENST00000531086	RP11-755F10.1	ENSG00000129292	PHF20L1	18.86	91.7416	A8MW92	Epi	NA
ENSG00000255320	ENST00000531086	RP11-755F10.1	ENSG00000197879	MYO1C	18.85	92.8614	O00159	Epi	NA
ENSG00000255320	ENST00000531086	RP11-755F10.1	ENSG00000086758	HUWE1	18.84	96.514	Q7Z6Z7	Epi	NA
ENSG00000255320	ENST00000531086	RP11-755F10.1	ENSG00000066135	KDM4A	18.75	91.8223	O75164	Epi	NA
ENSG00000255320	ENST00000531086	RP11-755F10.1	ENSG00000103549	RNF40	18.61	94.5202	O75150	Epi	NA
ENSG00000255320	ENST00000531086	RP11-755F10.1	ENSG00000196498	NCOR2	18.13	95.7435	Q9Y618	Epi	NA
ENSG00000255320	ENST00000531086	RP11-755F10.1	ENSG00000170322	NFRKB	17.87	92.4747	Q6P4R8	Epi	NA
ENSG00000255320	ENST00000531086	RP11-755F10.1	ENSG00000171988	JMJD1C	17.45	90.3196	Q15652	Epi	NA
ENSG00000255320	ENST00000531086	RP11-755F10.1	ENSG00000115548	KDM3A	16.79	91.6497	Q9Y4C1	Epi	NA
ENSG00000255320	ENST00000531086	RP11-755F10.1	ENSG00000120733	KDM3B	16.52	91.0801	Q7LBC6	Epi	NA
ENSG00000255320	ENST00000531086	RP11-755F10.1	ENSG00000084093	REST	15.39	92.6192	Q13127	TF,Epi	NA
ENSG00000255320	ENST00000531086	RP11-755F10.1	ENSG00000189079	ARID2	14.49	90.3986	Q68CP9	TF,Epi	NA
ENSG00000255320	ENST00000531086	RP11-755F10.1	ENSG00000183495	EP400	13.88	95.7633	Q96L91	Epi	NA
ENSG00000255320	ENST00000531086	RP11-755F10.1	ENSG00000126012	KDM5C	12.85	94.1486	P41229	Epi	NA
ENSG00000255320	ENST00000531086	RP11-755F10.1	ENSG00000083168	KAT6A	12.62	92.8164	Q92794	Epi	NA
ENSG00000255320	ENST00000531086	RP11-755F10.1	ENSG00000120071	KANSL1	9.88	92.8352	Q7Z3B3	Epi	NA
ENSG00000255320	ENST00000531086	RP11-755F10.1	ENSG00000173473	SMARCC1	28.15	91.6831	Q92922	Epi	NA
ENSG00000255320	ENST00000531086	RP11-755F10.1	ENSG00000141867	BRD4	21.76	93.7438	O60885	Epi	NA
ENSG00000255320	ENST00000531086	RP11-755F10.1	ENSG00000196367	TRRAP	21.16	94.5752	Q9Y4A5	Epi	NA
ENSG00000255320	ENST00000531086	RP11-755F10.1	ENSG00000175054	ATR	20.96	94.544	Q13535	Epi	NA
ENSG00000255320	ENST00000531086	RP11-755F10.1	ENSG00000263001	GTF2I	19.08	91.195	P78347	TF,Epi	NA
ENSG00000255320	ENST00000531086	RP11-755F10.1	ENSG00000116731	PRDM2	18.54	94.1214	Q13029	TF,Epi	NA
ENSG00000255320	ENST00000531086	RP11-755F10.1	ENSG00000141027	NCOR1	18.22	94.451	O75376	Epi	NA
ENSG00000255320	ENST00000531086	RP11-755F10.1	ENSG00000147130	ZMYM3	17.96	93.8802	Q14202	Epi	NA
ENSG00000255320	ENST00000531086	RP11-755F10.1	ENSG00000183337	BCOR	17.53	94.9901	Q6W2J9	Epi	NA
ENSG00000255320	ENST00000531086	RP11-755F10.1	ENSG00000147133	TAF1	17.32	93.1859	P21675	Epi	NA
ENSG00000255320	ENST00000531086	RP11-755F10.1	ENSG00000139613	SMARCC2	16.05	94.9798	Q8TAQ2	Epi	NA
ENSG00000255320	ENST00000531086	RP11-755F10.1	ENSG00000198646	NCOA6	13.67	95.3582	Q14686	Epi	NA
ENSG00000255320	ENST00000531086	RP11-755F10.1	ENSG00000140632	GLYR1	10.8	91.6623	Q49A26	TF,Epi	NA

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000255320	ENST00000531086	RP11-755F10.1	ENSG00000025293	PHF20	26.96	93.5077	Q9BVI0	TF,Epi	NA
ENSG00000255320	ENST00000531086	RP11-755F10.1	ENSG00000102908	NFAT5	23.67	90.8731	O94916	TF	NA
ENSG00000255320	ENST00000531086	RP11-755F10.1	ENSG00000257923	CUX1	20.84	92.1493	P39880	TF	NA
ENSG00000255320	ENST00000531086	RP11-755F10.1	ENSG00000263001	GTF2I	19.08	91.6019	P78347	TF,Epi	NA
ENSG00000255320	ENST00000531086	RP11-755F10.1	ENSG00000116731	PRDM2	18.54	94.1337	Q13029	TF,Epi	NA
ENSG00000255320	ENST00000531086	RP11-755F10.1	ENSG00000084093	REST	15.39	93.3414	Q13127	TF,Epi	NA
ENSG00000255320	ENST00000531086	RP11-755F10.1	ENSG00000156273	BACH1	15.08	92.0098	O14867	TF	NA
ENSG00000255320	ENST00000531086	RP11-755F10.1	ENSG00000189079	ARID2	14.49	90.6441	Q68CP9	TF,Epi	NA
ENSG00000255320	ENST00000531086	RP11-755F10.1	ENSG00000126464	PRR12	13.53	92.3988	Q9ULL5	TF	NA
ENSG00000255320	ENST00000531086	RP11-755F10.1	ENSG00000065970	FOXJ2	12.67	91.3213	Q9P0K8	TF	NA
ENSG00000255320	ENST00000531086	RP11-755F10.1	ENSG00000102034	ELF4	12.12	92.9754	Q99607	TF	NA
ENSG00000255320	ENST00000531086	RP11-755F10.1	ENSG00000142065	ZFP14	11.77	92.0993	Q9HCL3	TF	NA
ENSG00000255320	ENST00000531086	RP11-755F10.1	ENSG00000146587	RBAK	11.18	93.2057	Q9NYW8	TF	NA
ENSG00000255320	ENST00000531086	RP11-755F10.1	ENSG00000140632	GLYR1	10.8	91.7589	Q49A26	TF,Epi	NA
ENSG00000255320	ENST00000531086	RP11-755F10.1	ENSG00000164631	ZNF12	7.97	92.5998	P17014	TF	NA
ENSG00000255320	ENST00000531086	RP11-755F10.1	ENSG00000198815	FOXJ3	7.83	90.3973	Q9UPW0	TF	NA
ENSG00000255320	ENST00000531086	RP11-755F10.1	ENSG00000062194	GPBP1	6.92	90.8546	Q86WP2	TF	NA
ENSG00000255320	ENST00000531086	RP11-755F10.1	ENSG00000120690	ELF1	5.36	92.756	P32519	TF	NA

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000255320	ENST00000531086	RP11-755F10.1	ENSG00000159082	SYNJ1	21.56	93.9311	O43426	RBP	NA
ENSG00000255320	ENST00000531086	RP11-755F10.1	ENSG00000213079	SCAF8	19.54	93.4133	Q9UPN6	RBP	NA
ENSG00000255320	ENST00000531086	RP11-755F10.1	ENSG00000106344	RBM28	18.17	91.8755	Q9NW13	RBP	NA
ENSG00000255320	ENST00000531086	RP11-755F10.1	ENSG00000137776	SLTM	18.05	92.8003	Q9NWH9	RBP	NA
ENSG00000255320	ENST00000531086	RP11-755F10.1	ENSG00000167978	SRRM2	6.35	96.4829	Q9UQ35	RBP	NA

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lncRNA-DNA interaction for RP11-755F10.1

lncRNA targets the enhancer region and positively regulates the gene expression.

lncRNA targets the promoter region and positively regulates the gene expression.

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for RP11-755F10.1

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

NDUFC1,ATP5MC1,ATP5PF,COA3,DDT,HSD17B10,UQCRQ,LAMTOR2,TXN2,MRPL58,SLIRP,COX5A,GCAT,MRPL40,MRPL55,FAM162A,ATP5MJ,COX6A1,ATP5PD,EDF1,NDUFB1,NDUFA6,DPM3,ATP5ME,MRPL27

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

ORF mutation

-lncRNA and exonskipping events are negatively correlated.

lncRNA and exonskipping events negative correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	LOF
ENSG00000255320	ENST00000531086	exon_skip_98384	chr12:124327408-124327633	-19.17	-0.1176	NCOR2	ENST00000405201	In-frame

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

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Variants for RP11-755F10.1

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID

PC Gene ID

PC Gene Name

Positive correlated cancers

Cancer with PC gene up-regulation

Cancer with PC gene down-regulation

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID	LncRNA ENST ID	PC Gene Name	PC Gene ID	PC ENST ID	dG	nDG	Cancer with PC gene up-regulation	Cancer with PC gene Down-regulation
ENSG00000255320	ENST00000531086	HSD17B10	ENSG00000072506	ENST00000375304	-0.1891	200	-	CHOL
ENSG00000255320	ENST00000531086	HSD17B10	ENSG00000072506	ENST00000168216	-0.1891	200	-	CHOL
ENSG00000255320	ENST00000531086	DDT	ENSG00000099977	ENST00000428792	-0.1247	102	-	CHOL
ENSG00000255320	ENST00000531086	DDT	ENSG00000099977	ENST00000403754	-0.9800	23	-	CHOL
ENSG00000255320	ENST00000531086	DDT	ENSG00000099977	ENST00000430101	-0.1064	125	-	CHOL
ENSG00000255320	ENST00000531086	GCAT	ENSG00000100116	ENST00000323205	-0.1572	154	-	CHOL
ENSG00000255320	ENST00000531086	GCAT	ENSG00000100116	ENST00000248924	-0.1325	166	-	CHOL
ENSG00000255320	ENST00000531086	FAM162A	ENSG00000114023	ENST00000232125	-0.1383	32	-	CHOL

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000255320.1	ENST00000531086.1	79	133	372

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential