lncRNA targets the enhancer region and positively regulates the gene expression. |
lncRNA targets the promoter region and positively regulates the gene expression. |
lncRNA targets the promoter region and negatively regulates the gene expression. |
lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
Only predicted by lncTar | RBMS2,CNOT1,ASB8,FNIP1,QKI,CEBPZ,FEZ2,PPP4R1,VPS4B,OXSR1,TRAPPC11,KLHL28,NT5C2,ZMYND11,VWA5A,HIPK1,SECISBP2L,SEPTIN10,UBR1,PCDHGC3,PPP1R12A,MBNL1,TAOK3,NPEPPS,SMAD4,KIAA1109,PTPN11,HPS3,ITGB1,ARHGAP21,HECTD1,NEDD1,FCHO2,MAT2B,PBX1,SLAIN2,PBRM1,ANKFY1,PKN2,ERBIN,ABLIM1,SEC24B,ATRN,RABL3,CREBRF,SEC24A,SON,SH3GLB1,NBR1,MACF1,ATP11B,CTNNB1,RIC1,NUMB,PDPK1,KTN1,C5orf24,MFSD6,ACBD5,SNX29,PHF3,APAF1,ZEB2,USP33,BBX,CPEB4,ILK,CEP120,RNF111,PTPN21,PCNX1,SGMS1,CDC42SE2,UBE2D3,SNRK,KIDINS220,CYLD,IQGAP1,CDC27,DYNC1I2,GIGYF2,SMARCA2,SLMAP,CLIP1,STAT3,ARNT,RAD50,FBXO11,APPBP2,FBXW11,DDX6,PIAS1,CLASP2,SEC23A,IQGAP2,ATF2,CCNI,MKLN1,ARHGAP5,AFF4,DDX3X,ITSN2,ASXL2,MFSD14A,USP47,SMAD1,HIPK2,PIKFYVE,MIER3,ROCK2,MYOF,MTMR9,PDLIM5,TIPARP,KIF13B,PCM1,ASH1L,DYNC1LI2,VEZT,KBTBD4,RAB18,UEVLD,YAP1,ZNF106,HNMT,RASA1,DENND4A,ARL1,FOXN3,CERT1,WDR7,TMEM131,SSH1,MARCHF7,OSBPL8,SWAP70,SMG6,KDM6A,CHURC1,AFTPH,MED13L,SEPTIN2,KIAA0232,KLHL5,COG6,EPS15,LYSMD3,ACTR2,DOCK9,CCNG1,SYNJ1,VAMP7,PIGN,RBM7,AKAP10,GPATCH8,CNOT8,PLSCR4,TRIP12,PDCD6IP,GALC,GTF2A1,APH1B,PRKAA1,SEMA3C,ANTXR2,RHOT1,KIF2A,GTF2I,MED1,PPIG,PLS1,EIF3L,REST,SNX4,HBP1,MORC3,SMAD5,SEC62,NEK7,EIF4G2,CSNK1A1,STX7,SOS2,CD46,FAM160B1,CSNK1G3,CAB39,ATP8A1,POLK,PRKAR1A,ACADM,PPP3CB,MIS18BP1,SEC31A,ERAP1,ELF1,BACH1,IL6ST,YME1L1,OSBPL1A,BLOC1S6,RB1,AFF1,GCC2,LPP,CAST,USP8,PICALM,DENND5A,FAM114A2,FAM13B,ITFG1,FEM1B,FNDC3B,WWC2,ATF1,SPG11,VAPA,MPRIP,CTDSP2,NEMF,FAM172A,AHNAK,DHX36,LATS1,FYCO1,DOCK1,MCFD2,IBTK,SPOPL,SCAF11,RAB6A | Exist in public source | NA |
lncRNA targets the skipped exon region. | -lncRNA and exonskipping events are positively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | ENSG00000255224 | ENST00000524499 | exon_skip_462673 | chr6:138926400-138926481 | -10.64 | -0.1612 | REPS1 | ENST00000450536 | In-frame | ENSG00000255224 | ENST00000524499 | exon_skip_430601 | chr4:82842139-82842481 | -35.95 | -0.1123 | SEC31A | ENST00000355196,ENST00000395310,ENST00000448323 | In-frame |
-lncRNA and exonskipping events are negatively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | ENSG00000255224 | ENST00000524499 | exon_skip_5818 | chr1:45568484-45568684 | -24.65 | -0.1318 | AKR1A1 | ENST00000351829,ENST00000372070 | Frame-shift | ENSG00000255224 | ENST00000524499 | exon_skip_445390 | chr5:150403120-150403312 | -25.57 | -0.1445 | CD74 | ENST00000009530 | In-frame | ENSG00000255224 | ENST00000524499 | exon_skip_300022 | chr18:79919183-79919400 | -32.27 | -0.1876 | PQLC1 | ENST00000397778 | Frame-shift | ENSG00000255224 | ENST00000524499 | exon_skip_303345 | chr19:17227839-17228005 | -22.43 | -0.1420 | OCEL1 | ENST00000215061 | Frame-shift | ENSG00000255224 | ENST00000524499 | exon_skip_307385 | chr19:40783777-40783840 | -17.45 | -0.3009 | RAB4B | ENST00000357052,ENST00000594800 | In-frame |
lncRNA targets by miRNA. |
LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
RNA A-to-I editing events in lncRNA. |
LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
Edited-associated DElncRNAs in cancer. |
LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
lncRNA regulates differentially expressed genes by function as enhancer. |
LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation | ENSG00000255224 | ENST00000524499 | FYCO1 | ENSG00000163820 | ENST00000438446 | -0.1150 | 738 | - | BLCA,UCEC,LUSC,READ | ENSG00000255224 | ENST00000524499 | SEC23A | ENSG00000100934 | ENST00000557280 | -0.1550 | 39 | - | BLCA,UCEC | ENSG00000255224 | ENST00000524499 | SEC23A | ENSG00000100934 | ENST00000553970 | -0.1550 | 39 | - | BLCA,UCEC | ENSG00000255224 | ENST00000524499 | CLIP1 | ENSG00000130779 | ENST00000540539 | -0.1231 | 788 | - | BLCA | ENSG00000255224 | ENST00000524499 | CLIP1 | ENSG00000130779 | ENST00000540338 | -0.5016 | 669 | - | BLCA | ENSG00000255224 | ENST00000524499 | PDLIM5 | ENSG00000163110 | ENST00000512274 | -0.1568 | 207 | - | BLCA,UCEC,LIHC | ENSG00000255224 | ENST00000524499 | PDLIM5 | ENSG00000163110 | ENST00000509357 | -0.1228 | 613 | - | BLCA,UCEC,LIHC | ENSG00000255224 | ENST00000524499 | PDLIM5 | ENSG00000163110 | ENST00000506632 | -0.1156 | 808 | - | BLCA,UCEC,LIHC | ENSG00000255224 | ENST00000524499 | SEPTIN10 | ENSG00000186522 | ENST00000437928 | -0.1179 | 334 | - | BLCA,UCEC | ENSG00000255224 | ENST00000524499 | SEPTIN10 | ENSG00000186522 | ENST00000425498 | -0.1438 | 18 | - | BLCA,UCEC | ENSG00000255224 | ENST00000524499 | PCDHGC3 | ENSG00000240184 | ENST00000611950 | -0.3280 | 302 | - | BLCA,UCEC,LUSC,LUAD | ENSG00000255224 | ENST00000524499 | PCDHGC3 | ENSG00000240184 | ENST00000617222 | -0.4086 | 616 | - | BLCA,UCEC,LUSC,LUAD | ENSG00000255224 | ENST00000524499 | DENND4A | ENSG00000174485 | ENST00000431932 | -0.1207 | 387 | - | UCEC | ENSG00000255224 | ENST00000524499 | CHURC1 | ENSG00000258289 | ENST00000548752 | -0.1306 | 1 | - | BLCA,UCEC,READ | ENSG00000255224 | ENST00000524499 | CHURC1 | ENSG00000258289 | ENST00000547625 | -0.4889 | 966 | - | BLCA,UCEC,READ | ENSG00000255224 | ENST00000524499 | PPP1R12A | ENSG00000058272 | ENST00000550903 | -0.1303 | 1 | - | BLCA,UCEC,READ | ENSG00000255224 | ENST00000524499 | PPP1R12A | ENSG00000058272 | ENST00000550299 | -0.1830 | 807 | - | BLCA,UCEC,READ | ENSG00000255224 | ENST00000524499 | PPP1R12A | ENSG00000058272 | ENST00000546369 | -0.1500 | 1152 | - | BLCA,UCEC,READ | ENSG00000255224 | ENST00000524499 | IL6ST | ENSG00000134352 | ENST00000502326 | -0.2109 | 230 | - | BLCA,UCEC,LUSC,LIHC,READ | ENSG00000255224 | ENST00000524499 | PTPN21 | ENSG00000070778 | ENST00000553531 | -0.1181 | 637 | - | BLCA,UCEC,LUSC,BRCA,LUAD,READ | ENSG00000255224 | ENST00000524499 | SMARCA2 | ENSG00000080503 | ENST00000382186 | -0.4700 | 552 | - | UCEC | ENSG00000255224 | ENST00000524499 | VAPA | ENSG00000101558 | ENST00000340541 | -0.1109 | 410 | - | READ | ENSG00000255224 | ENST00000524499 | VWA5A | ENSG00000110002 | ENST00000392744 | -0.2172 | 570 | - | LUSC,READ | ENSG00000255224 | ENST00000524499 | ACADM | ENSG00000117054 | ENST00000530953 | -0.1127 | 719 | - | LIHC,READ | ENSG00000255224 | ENST00000524499 | ACADM | ENSG00000117054 | ENST00000420607 | -0.1708 | 390 | - | LIHC,READ | ENSG00000255224 | ENST00000524499 | ACADM | ENSG00000117054 | ENST00000528016 | -0.1224 | 441 | - | LIHC,READ | ENSG00000255224 | ENST00000524499 | VPS4B | ENSG00000119541 | ENST00000591519 | -0.3645 | 724 | - | READ | ENSG00000255224 | ENST00000524499 | ATP8A1 | ENSG00000124406 | ENST00000515872 | -0.1016 | 754 | - | LUSC,READ | ENSG00000255224 | ENST00000524499 | ATP8A1 | ENSG00000124406 | ENST00000504024 | -0.1105 | 1 | - | LUSC,READ | ENSG00000255224 | ENST00000524499 | SECISBP2L | ENSG00000138593 | ENST00000561428 | -0.2479 | 164 | - | LUSC,LUAD,READ | ENSG00000255224 | ENST00000524499 | OSBPL1A | ENSG00000141447 | ENST00000357041 | -0.3848 | 150 | - | BLCA,UCEC,READ | ENSG00000255224 | ENST00000524499 | OSBPL1A | ENSG00000141447 | ENST00000578013 | -0.4643 | 679 | - | BLCA,UCEC,READ | ENSG00000255224 | ENST00000524499 | OSBPL1A | ENSG00000141447 | ENST00000578055 | -0.1580 | 1079 | - | BLCA,UCEC,READ | ENSG00000255224 | ENST00000524499 | IQGAP2 | ENSG00000145703 | ENST00000396234 | -0.1513 | 106 | - | LUSC,READ | ENSG00000255224 | ENST00000524499 | IQGAP2 | ENSG00000145703 | ENST00000502745 | -0.1141 | 99 | - | LUSC,READ | ENSG00000255224 | ENST00000524499 | NEK7 | ENSG00000151414 | ENST00000367383 | -0.1563 | 980 | - | UCEC,LUSC,READ | ENSG00000255224 | ENST00000524499 | MIER3 | ENSG00000155545 | ENST00000451637 | -0.1256 | 60 | - | READ | ENSG00000255224 | ENST00000524499 | CDC42SE2 | ENSG00000158985 | ENST00000502582 | -0.1109 | 496 | - | READ | ENSG00000255224 | ENST00000524499 | MORC3 | ENSG00000159256 | ENST00000549948 | -0.1015 | 1 | - | UCEC | ENSG00000255224 | ENST00000524499 | MORC3 | ENSG00000159256 | ENST00000552581 | -0.1464 | 1 | - | UCEC | ENSG00000255224 | ENST00000524499 | ANTXR2 | ENSG00000163297 | ENST00000404191 | -0.2947 | 837 | - | BLCA,UCEC,LUSC,BRCA,LIHC,READ | ENSG00000255224 | ENST00000524499 | ANTXR2 | ENSG00000163297 | ENST00000346652 | -0.3720 | 679 | - | BLCA,UCEC,LUSC,BRCA,LIHC,READ | ENSG00000255224 | ENST00000524499 | FEM1B | ENSG00000169018 | ENST00000566008 | -0.1449 | 1089 | - | UCEC | ENSG00000255224 | ENST00000524499 | FEZ2 | ENSG00000171055 | ENST00000414288 | -0.1373 | 241 | - | UCEC,READ | ENSG00000255224 | ENST00000524499 | KIF13B | ENSG00000197892 | ENST00000523130 | -2.9550 | 819 | - | LUSC,READ | ENSG00000255224 | ENST00000524499 | MED13L | ENSG00000123066 | ENST00000552340 | -0.1093 | 870 | - | UCEC | ENSG00000255224 | ENST00000524499 | FAM13B | ENSG00000031003 | ENST00000425075 | -0.1185 | 89 | - | BLCA,LUSC,READ | ENSG00000255224 | ENST00000524499 | FAM13B | ENSG00000031003 | ENST00000420893 | -0.1766 | 983 | - | BLCA,LUSC,READ | ENSG00000255224 | ENST00000524499 | KLHL5 | ENSG00000109790 | ENST00000515612 | -0.1492 | 100 | - | BLCA,READ | ENSG00000255224 | ENST00000524499 | YAP1 | ENSG00000137693 | ENST00000531439 | -0.5977 | 786 | - | UCEC,BRCA | ENSG00000255224 | ENST00000524499 | ILK | ENSG00000166333 | ENST00000532063 | -0.1347 | 79 | - | BLCA,UCEC,LUSC,READ | ENSG00000255224 | ENST00000524499 | ILK | ENSG00000166333 | ENST00000299421 | -0.1510 | 83 | - | BLCA,UCEC,LUSC,READ | ENSG00000255224 | ENST00000524499 | ILK | ENSG00000166333 | ENST00000537806 | -0.1392 | 118 | - | BLCA,UCEC,LUSC,READ | ENSG00000255224 | ENST00000524499 | ILK | ENSG00000166333 | ENST00000420936 | -0.1384 | 120 | - | BLCA,UCEC,LUSC,READ | ENSG00000255224 | ENST00000524499 | ILK | ENSG00000166333 | ENST00000528995 | -0.1510 | 87 | - | BLCA,UCEC,LUSC,READ | ENSG00000255224 | ENST00000524499 | ILK | ENSG00000166333 | ENST00000396751 | -0.1510 | 83 | - | BLCA,UCEC,LUSC,READ | ENSG00000255224 | ENST00000524499 | ILK | ENSG00000166333 | ENST00000526318 | -0.1510 | 82 | - | BLCA,UCEC,LUSC,READ | ENSG00000255224 | ENST00000524499 | ROCK2 | ENSG00000134318 | ENST00000401753 | -0.1052 | 808 | - | BLCA,UCEC | ENSG00000255224 | ENST00000524499 | LPP | ENSG00000145012 | ENST00000415906 | -0.1270 | 66 | - | BLCA,UCEC,READ | ENSG00000255224 | ENST00000524499 | SOS2 | ENSG00000100485 | ENST00000543680 | -0.3140 | 232 | - | READ | ENSG00000255224 | ENST00000524499 | SOS2 | ENSG00000100485 | ENST00000556452 | -0.1595 | 29 | - | READ | ENSG00000255224 | ENST00000524499 | PCNX1 | ENSG00000100731 | ENST00000439984 | -0.1760 | 143 | - | BRCA | ENSG00000255224 | ENST00000524499 | PCNX1 | ENSG00000100731 | ENST00000554691 | -0.1760 | 108 | - | BRCA | ENSG00000255224 | ENST00000524499 | PCNX1 | ENSG00000100731 | ENST00000555780 | -0.3372 | 100 | - | BRCA | ENSG00000255224 | ENST00000524499 | MTMR9 | ENSG00000104643 | ENST00000526292 | -0.1155 | 605 | - | READ | ENSG00000255224 | ENST00000524499 | PPP3CB | ENSG00000107758 | ENST00000430762 | -0.5083 | 479 | - | BLCA,READ | ENSG00000255224 | ENST00000524499 | PLSCR4 | ENSG00000114698 | ENST00000446574 | -0.1293 | 792 | - | BLCA,UCEC,LUSC,BRCA,LUAD,LIHC,READ | ENSG00000255224 | ENST00000524499 | PLSCR4 | ENSG00000114698 | ENST00000493382 | -0.1819 | 699 | - | BLCA,UCEC,LUSC,BRCA,LUAD,LIHC,READ | ENSG00000255224 | ENST00000524499 | AHNAK | ENSG00000124942 | ENST00000530124 | -0.1215 | 240 | - | BLCA,UCEC,LUSC,BRCA,LUAD,READ | ENSG00000255224 | ENST00000524499 | AHNAK | ENSG00000124942 | ENST00000257247 | -0.1215 | 244 | - | BLCA,UCEC,LUSC,BRCA,LUAD,READ | ENSG00000255224 | ENST00000524499 | SEC24B | ENSG00000138802 | ENST00000504968 | -0.1886 | 191 | - | LIHC | ENSG00000255224 | ENST00000524499 | SEC24B | ENSG00000138802 | ENST00000399100 | -0.8600 | 608 | - | LIHC | ENSG00000255224 | ENST00000524499 | HNMT | ENSG00000150540 | ENST00000410115 | -0.1292 | 985 | - | UCEC,LUSC | ENSG00000255224 | ENST00000524499 | HNMT | ENSG00000150540 | ENST00000329366 | -0.1581 | 164 | - | UCEC,LUSC | ENSG00000255224 | ENST00000524499 | FCHO2 | ENSG00000157107 | ENST00000287761 | -0.1507 | 826 | - | LUSC,READ | ENSG00000255224 | ENST00000524499 | SLMAP | ENSG00000163681 | ENST00000416658 | -0.1137 | 1 | - | BLCA,UCEC,READ | ENSG00000255224 | ENST00000524499 | SLMAP | ENSG00000163681 | ENST00000495364 | -0.2050 | 860 | - | BLCA,UCEC,READ | ENSG00000255224 | ENST00000524499 | SLMAP | ENSG00000163681 | ENST00000494088 | -0.1255 | 2 | - | BLCA,UCEC,READ | ENSG00000255224 | ENST00000524499 | SNRK | ENSG00000163788 | ENST00000437827 | -0.1377 | 808 | - | BLCA,UCEC,LUSC,LUAD,READ | ENSG00000255224 | ENST00000524499 | CREBRF | ENSG00000164463 | ENST00000520420 | -0.1471 | 1 | - | BLCA,UCEC,LUSC,READ | ENSG00000255224 | ENST00000524499 | CEP120 | ENSG00000168944 | ENST00000515110 | -0.4930 | 1037 | - | UCEC | ENSG00000255224 | ENST00000524499 | AFF1 | ENSG00000172493 | ENST00000544085 | -0.6750 | 396 | - | READ |
lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | ENSG00000255224.1 | ENST00000524499.1 | 264 | 1049 | 255 |
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