lncRNA targets the enhancer region and positively regulates the gene expression. |
lncRNA targets the promoter region and positively regulates the gene expression. |
lncRNA targets the promoter region and negatively regulates the gene expression. |
lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
Only predicted by lncTar | HCCS,PCCB,SLC25A3,HSPA9 | Exist in public source | NA |
lncRNA targets the skipped exon region. | -lncRNA and exonskipping events are positively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
-lncRNA and exonskipping events are negatively correlated. |
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LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | ENSG00000254910 | ENST00000526612 | exon_skip_111863 | chr14:23565815-23565892 | -15.13 | -0.1965 | AP1G2 | ENST00000308724,ENST00000397120 | Frame-shift | ENSG00000254910 | ENST00000526612 | exon_skip_370518 | chr22:50247691-50247776 | -14.67 | -0.1746 | HDAC10 | ENST00000216271 | Frame-shift | ENSG00000254910 | ENST00000526612 | exon_skip_74009 | chr11:64773429-64773505 | -15.02 | -0.2781 | SF1 | ENST00000377390 | Frame-shift | ENSG00000254910 | ENST00000526612 | exon_skip_114200 | chr14:73279280-73279424 | -24.26 | -0.2426 | NUMB | ENST00000355058,ENST00000555238 | In-frame | ENSG00000254910 | ENST00000526612 | exon_skip_365010 | chr22:36257082-36257136 | -10.63 | -0.2215 | APOL1 | ENST00000397278,ENST00000397279,ENST00000422706 | In-frame | ENSG00000254910 | ENST00000526612 | exon_skip_41841 | chr10:68756272-68756483 | -23.02 | -0.1096 | CCAR1 | ENST00000265872 | Frame-shift | ENSG00000254910 | ENST00000526612 | exon_skip_53559 | chr10:101793912-101793998 | -9.70 | -0.2109 | OGA | ENST00000361464 | Frame-shift | ENSG00000254910 | ENST00000526612 | exon_skip_139422 | chr16:89114338-89114487 | -21.67 | -0.2006 | ACSF3 | ENST00000317447,ENST00000406948 | Frame-shift | ENSG00000254910 | ENST00000526612 | exon_skip_287763 | chr17:28884224-28884315 | -17.34 | -0.2990 | FLOT2 | ENST00000394908 | Frame-shift | ENSG00000254910 | ENST00000526612 | exon_skip_374375 | chr3:49675182-49675309 | -20.39 | -0.1789 | APEH | ENST00000296456 | Frame-shift | ENSG00000254910 | ENST00000526612 | exon_skip_380242 | chr3:186784961-186785101 | -21.80 | -0.1603 | EIF4A2 | ENST00000323963 | Frame-shift | ENSG00000254910 | ENST00000526612 | exon_skip_79575 | chr12:6727925-6728001 | -10.16 | -0.1373 | COPS7A | ENST00000229251,ENST00000534877,ENST00000534947,ENST00000539735,ENST00000543155 | Frame-shift |
lncRNA targets by miRNA. |
LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
RNA A-to-I editing events in lncRNA. |
LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
Edited-associated DElncRNAs in cancer. |
LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
lncRNA regulates differentially expressed genes by function as enhancer. |
LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation | ENSG00000254910 | ENST00000526612 | HSPA9 | ENSG00000113013 | ENST00000512328 | -0.1217 | 60 | KICH | - | ENSG00000254910 | ENST00000526612 | HSPA9 | ENSG00000113013 | ENST00000505110 | -0.1003 | 96 | KICH | - | ENSG00000254910 | ENST00000526612 | PCCB | ENSG00000114054 | ENST00000251654 | -0.1201 | 250 | CESC,UCEC | CHOL | ENSG00000254910 | ENST00000526612 | PCCB | ENSG00000114054 | ENST00000490504 | -0.1201 | 250 | CESC,UCEC | CHOL | ENSG00000254910 | ENST00000526612 | PCCB | ENSG00000114054 | ENST00000483687 | -0.1201 | 250 | CESC,UCEC | CHOL | ENSG00000254910 | ENST00000526612 | PCCB | ENSG00000114054 | ENST00000468777 | -0.1201 | 250 | CESC,UCEC | CHOL | ENSG00000254910 | ENST00000526612 | PCCB | ENSG00000114054 | ENST00000462637 | -0.1201 | 250 | CESC,UCEC | CHOL | ENSG00000254910 | ENST00000526612 | PCCB | ENSG00000114054 | ENST00000466072 | -0.1201 | 250 | CESC,UCEC | CHOL | ENSG00000254910 | ENST00000526612 | PCCB | ENSG00000114054 | ENST00000482086 | -0.1201 | 250 | CESC,UCEC | CHOL | ENSG00000254910 | ENST00000526612 | PCCB | ENSG00000114054 | ENST00000471595 | -0.1007 | 1 | CESC,UCEC | CHOL | ENSG00000254910 | ENST00000526612 | PCCB | ENSG00000114054 | ENST00000469217 | -0.1201 | 249 | CESC,UCEC | CHOL | ENSG00000254910 | ENST00000526612 | SLC25A3 | ENSG00000075415 | ENST00000551265 | -0.1413 | 5 | KICH | - | ENSG00000254910 | ENST00000526612 | SLC25A3 | ENSG00000075415 | ENST00000547534 | -0.7733 | 245 | KICH | - | ENSG00000254910 | ENST00000526612 | SLC25A3 | ENSG00000075415 | ENST00000549338 | -0.1304 | 304 | KICH | - | ENSG00000254910 | ENST00000526612 | SLC25A3 | ENSG00000075415 | ENST00000548847 | -0.1304 | 310 | KICH | - | ENSG00000254910 | ENST00000526612 | HCCS | ENSG00000004961 | ENST00000380763 | -0.2214 | 1 | KICH,CESC | - | ENSG00000254910 | ENST00000526612 | HCCS | ENSG00000004961 | ENST00000380762 | -0.2214 | 1 | KICH,CESC | - |
lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | ENSG00000254910.1 | ENST00000526612.1 | 199 | 597 | 1 |
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