lncRNA targets the enhancer region and positively regulates the gene expression. |
Only predicted by TDF | SPINT1,TMEM38A,SDHD,C11orf68,TMEM9B,SLC29A2,KCNJ11,MARK2,F11R,CAPN1,CDC42BPG,GOT1,CKMT2,NDUFB5,TCTA,DDR1,MGAT4B,MRPL49,TSG101,PIGC,DLAT,AKAP1,NDRG2,SLC25A12,DHRS11,ATP1B1,SH3BGR,ZFPL1,LLGL2,TMX2,SSH3 | Exist in public source | NA |
lncRNA targets the promoter region and positively regulates the gene expression. |
lncRNA targets the promoter region and negatively regulates the gene expression. |
lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
lncRNA targets the skipped exon region. | -lncRNA and exonskipping events are positively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
-lncRNA and exonskipping events are negatively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF |
lncRNA targets by miRNA. |
LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
RNA A-to-I editing events in lncRNA. |
LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name | LncEditing_243147 | ENSG00000254614.2 | chr11 | 65180324 | - | antisense | AP003068.23 | ENST00000528551.1 | antisense | AP003068.23-002 |
Edited-associated DElncRNAs in cancer. |
LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change | ENSG00000254614 | LncEditing_243147 | OV | chr11_65180324_- | 3.484467e+00 | 2.606273e+00 | 2.386921e+00 | 4.167271e+00 | 3.082678e-05 | 3.671662e-05 | UP |
Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value | ENSG00000254614 | LncEditing_243147 | -5.754115e-01 | 4.316520e-06 | 4.929921e-05 |
Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
lncRNA regulates differentially expressed genes by function as enhancer. |
LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation | ENSG00000254614 | ENSG00000161013 | MGAT4B | CHOL,ESCA,KICH,PAAD,THYM | KICH | | ENSG00000254614 | ENSG00000187486 | KCNJ11 | CHOL,DLBC,KICH,KIRP,UCS | KICH | | ENSG00000254614 | ENSG00000174669 | SLC29A2 | KICH,KIRC,KIRP,LIHC,PAAD | KICH | |
LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | ENSG00000254614.2 | ENST00000528551.1 | 77 | 472 | 705 | ENSG00000254614.2 | ENST00000526623.2 | 59 | 202 | 23 |
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