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lncRNA: ENSG00000254166 |
Summary for CASC19 |
Gene summary |
Gene information | Ensembl ID | ENSG00000254166 | Gene symbol | CASC19 |
Gene name | cancer susceptibility 19 | |
HGNC | 49476 | |
Entrez ID | 103164619 | |
Gene type | lincRNA | |
Synonyms | 08q24.21|CASC19 | |
UniProtAcc |
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Structure and expression level for CASC19 |
AS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure. |
Differentially expressed gene analysis between cancer and normal samples. |
Ensembl ID | Base mean | log2FC(AD/control) | lfcSE | Stat | P-value | Adjc.p-value | DEG direction | Cancer type |
ENSG00000254166 | 7.153271e+01 | 6.812580e+00 | 4.154499e-01 | 1.639808e+01 | 1.970000e-60 | 6.970000e-59 | UP | LUSC |
ENSG00000254166 | 4.597001e+01 | 4.937993e+00 | 2.711922e-01 | 1.820846e+01 | 4.420000e-74 | 1.590000e-71 | UP | COAD |
ENSG00000254166 | 6.893454e+01 | 2.340906e+00 | 3.380268e-01 | 6.925209e+00 | 4.350000e-12 | 7.790000e-11 | UP | STAD |
ENSG00000254166 | 4.238924e+01 | 3.182175e+00 | 4.014362e-01 | 7.926974e+00 | 2.250000e-15 | 1.840000e-13 | UP | READ |
Correlation between lncRNAs and cancer stages. |
LncRNA Ensembl ID | Correlation | P-value | Cancer Type | Adjc.p-value |
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lncRNA-Protein interaction for CASC19 |
lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5). |
LncRNA Ensembl ID | LncRNA ENST ID | LncRNA Name | Protein Ensembl ID | Protein Name | CatRAPID Score | Lncpro Score | UniPortID | Gene Subtype | Public source |
lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5). |
LncRNA Ensembl ID | LncRNA ENST ID | LncRNA Name | Protein Ensembl ID | Protein Name | CatRAPID Score | Lncpro Score | UniPortID | Gene Subtype | Public source |
lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5). |
LncRNA Ensembl ID | LncRNA ENST ID | LncRNA Name | Protein Ensembl ID | Protein Name | CatRAPID Score | Lncpro Score | UniPortID | Gene Subtype | Public source |
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