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Center for Computational Systems Medicine
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lncRNA summary

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lncRNA structure and expression level

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lncRNA-Protein interaction

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lncRNA-DNA interaction

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lncRNA-RNA interaction

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Variants in lncRNA

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lncRNAs regulate the target genes through functioning as enhancers

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lncRNAs regulate the target genes through recruiting transcript factors

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lncRNAs regulate the alternative splicing events through interacting with splicing factor

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lncRNAs regulate mRNA through targeting the 3'-UTR region

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lncRNAs regulate mRNA by competing with miRNA

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lncRNA coding potential

lncRNA: ENSG00000253982

Summary for CLN8-AS1

check button Gene summary

Gene informationEnsembl ID

ENSG00000253982

Gene symbol

CLN8-AS1

Gene nameCLN8 antisense RNA 1
HGNC

55523

Entrez ID

101927752

Gene typeantisense
Synonyms08p23.3|CTD-2336O2.1|CLN8-AS1
UniProtAcc

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Structure and expression level for CLN8-AS1

check buttonDifferentially expressed gene analysis between cancer and normal samples.
DEG result
Ensembl IDBase meanlog2FC(AD/control)lfcSEStatP-valueAdjc.p-valueDEG direction Cancer type
ENSG000002539824.987544e+02-1.195172e+002.446688e-01-4.884857e+001.040000e-066.770000e-06DOWNCHOL
ENSG000002539823.272847e+02-1.568538e+003.730999e-01-4.204070e+002.620000e-053.981560e-04DOWNCESC
ENSG000002539821.942317e+02-1.107527e+001.274971e-01-8.686684e+003.730000e-185.230000e-17DOWNUCEC
ENSG000002539823.385607e+02-1.092389e+001.222355e-01-8.936758e+004.010000e-197.020000e-18DOWNLIHC

check buttonCorrelation between lncRNAs and cancer stages.
LncRNA Ensembl IDCorrelationP-valueCancer TypeAdjc.p-value
ENSG00000253982-3.621160e-011.256407e-19UCEC5.304831e-18

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lncRNA-Protein interaction for CLN8-AS1

lncrna_protein
check buttonlncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).
Epi result
LncRNA Ensembl IDLncRNA ENST IDLncRNA NameProtein Ensembl IDProtein NameCatRAPID ScoreLncpro ScoreUniPortIDGene SubtypePublic source
ENSG00000253982ENST00000517959CTD-2336O2.1ENSG00000108840HDAC586.8292.5607Q9UQL6EpiNA

check buttonlncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).
LncRNA Ensembl IDLncRNA ENST IDLncRNA NameProtein Ensembl IDProtein NameCatRAPID ScoreLncpro ScoreUniPortIDGene SubtypePublic source

check buttonlncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).
LncRNA Ensembl IDLncRNA ENST IDLncRNA NameProtein Ensembl IDProtein NameCatRAPID ScoreLncpro ScoreUniPortIDGene SubtypePublic source

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lncRNA-DNA interaction for CLN8-AS1

lncrna_DNA
check buttonlncRNA targets the enhancer region and positively regulates the gene expression.
Only predicted by TDF
FKBP8,ARL16,UXT,TCEA2,NDUFS3,CTF1,ABHD17A,BLVRB,IFT22,C12orf57,CIRBP,PET100,DYNC2LI1,WDR83OS,C1orf56,SHARPIN,DPM2,SIRT3,PPP2R3B,HINT2,ACD,POLR3D,DPP7,TIMM17B,MIEF2,B3GAT3,ISCU,CENPB,PIGP,NDUFA11,PRKAR1B,STK16,SNRPA,WDR54,TRAPPC2L,HIRIP3,FAAP20,COMMD7,COA3,LAMTOR2,PELI3,TERF2IP,EIF3G,PMM1,NDUFA3,SVBP,CLEC14A,MICOS13,TAZ,NAA80,SIGIRR,NABP2,FAM104B,NDUFB2,SARAF,RNF167,GTF2H5,USE1,CYB5D2,LIX1L,TMEM208,RAB4B,RNF187,CA11,ERI3,VKORC1,CISD3,RING1,SLC22A17,PSENEN,UROD,CBY1,WDR83,TIMMDC1,C3orf18,DHPS,WASHC3,BABAM1,GPR137,PIH1D1,RASIP1,TSSC4,B3GALT6,DDX49,INO80E,COMT,RBM42,YJU2,CBX7,TMEM101,CCDC28A,C17orf97,COPZ2,RPL35,NDUFA2,BORCS6,CLPP,TMEM160,LPAR2,FDX2,MCAT,FUZ,ESS2,TM2D2,RTL8B,TSC22D4,MTLN,FBXW4,FAM229B,MRPL57,PAFAH1B3,TNKS,CBX6,C2orf76,IL17RC,DCN,LRTOMT,COX6C,UBTD1,CCDC159,HMGN3,NDUFB1,NR1H3,CCAR2,CZIB,MLF2,MPG,TSPAN4,HDAC5,ELOF1,HEXD,SDHAF2,EEFSEC,IDH3B,PMVK,ANAPC11,SKP1,GABARAP,CCDC12,ILVBL,PTRHD1,TDRP,CLTB,MCRIP1,PHYHD1,LONRF1,CLU,ABHD8,ISCA2,TRIR,JMJD4,MRPL52,PRADC1,MMAB,ADSS1,FCGRT,DNAJC4,ADI1,MRPL55,HMGCL,CCDC28B,NMRAL1,NDUFB8,SH2B1,SSR4,SNRNP25,CRIP2,PRR3,FAM98C,TECR,NICN1,CRYL1,PPOX,CD63,SWI5,NDUFB11,IFTAP,C19orf53,TAX1BP3,GUK1,MRPL28,HSCB,ADPRM,HPF1,ACYP2,APBB1,LSM3,CTDSP1,ZNF25,C8orf58,SURF1,PPP2CB,PLD3,ASAH1,ELP3,NUBP2,TMEM175,GNPTG,C11orf68,TMEM8B,COMMD9,BCAP31,FIS1,CTDNEP1,GTPBP6,MRPL24,SPACA9,MSRB1,SMPD2,UBL7,EFEMP2,CHCHD2,NPDC1,NAA38,ABHD12,NME4,JTB,TCTA,SHISA4,CWC15,CCDC106,EMD,TOLLIP,FBXO44,NELFE,DOHH,EXD3,P4HTM,PCED1A,PRRT3,MAF1,STX8,TUSC2,EVA1B,MVB12A,ELP5,FN3K,TBCB,CHMP2A,SYCE1L,LMF1,THOC6,UBOX5,MPND,GATB,PQBP1,LENG1,PRCP,DENND6B,PEX11G,TRADD,IFI27L2,TLE2,SGF29,POLR2L,SERF2,VPS28,COMMD1,TRPT1,TATDN2,NUDT22,POMGNT2,CD2BP2,RABEP2,TMEM218,PTOV1,ALKBH4,PYURF,CCDC25,FBXL8,CNOT7,IDUA,TMEM134,POP5,CDIPT,ORAI3,TMEM91,GDI1,MYL5,UBXN6,SOD1,CNPY4,SULT1A1,CUEDC2,METTL26,SCAND1,COX14,DECR1,TCF25,SRR,UBXN11,HSPBP1,HAGH,CCDC71,ATP6AP1,B9D1,PPCDC,CROCC,CERS5,NCAPH2,ATPAF2,AKR7A2,COPRS,ARHGEF25,TRIOBP,JOSD2,AMZ2,EMC10,TMEM187,SPAG7,ENKD1,FAM3A,ATP5IF1,ZDHHC1,ACADS,BLOC1S1,SUMF1,C11orf1,MORN2,ATP5F1E,CLEC3B,MSRA,ZBTB4,MYPOP,MRPL34,POMT1,MEIS3,ARF5,CDPF1,NAT14,P3H3,DNPH1,C1orf35,LSM10,TIMM13,NME5,TMEM150A,NPRL2,SNX17,DCAKD,HDAC11,GFER,ZMYND12,HHLA3,MIEN1,LSM5,H2AJ,BCAT2,TP53I13,COQ4,WDR45,B4GALT7,CHST14,COPS9,CNRIP1,DHRS12,ZMAT5,STX10,PHLDB3,ECI1,ARMC5,ST6GALNAC6,ACBD4,SNU13,LRRC23,RBPMS,COPE,FAM50A,BAD,RAMP2,ELP6,ALKBH7,ZNF34,TMEM258,MYL6,KLHDC8B,SUOX,C9orf116,MZT2B,PHF1,SNX21,CETN2,ABHD11,TMC4,HDAC10,DEAF1,CHADL,SCRN2,HSF4,ANKS3,ATRAID,NOXA1,UCK1,SMDT1,PIGQ,TXNRD2,RASSF7,LAMTOR1,VMAC,TAF10,COX4I1,TMEM60,NFKBIL1,LRPAP1,ECSIT,CENPS,B3GALT4,ZCCHC24,MZT2A,RASL12,PPM1M,INTS9,CIAO2B,MCRIP2,MAGIX,BRAT1,AAMDC,GPAA1,MRPL27,MYL6B,C19orf25,RILP,FAM234A,ARPC4,DTX3,ERCC1,RNF215,TLE5,NDUFA1,ABHD14A,KLHL22,PHLDA3,TPGS1,TMEM25,COA5,ECSCR,BTBD2,ATP5F1D,SMARCD3,ATP5PF,UBE2M,MRPL43,APRT,TOMM7,HEBP1,ECHS1,NRIP2,CNTROB,RAI2,BDH2,B9D2,NOP53,IRF2BP1,SMIM19,WBP1,NDUFAF8,FKBP2,NDUFB10,DDRGK1,PRDX5,UBA52,NUDT16L1,C15orf61,TMEM115,TXN2,MRPS26,HDDC3,ARMCX6,SMIM1,IMP3,SERGEF,NDUFA13,C7orf50,C1orf122,DCTN3,COQ8B,RRNAD1,CD99L2,SNRPD2,TGFB1I1,ZSWIM7,SLC25A11,BIN3,RP11-523H20.5,NAGLU,MIF4GD,HSD17B8,OSCP1,NDUFA4,BCL7C,OBSL1,MFSD10,CD81,TMEM9,ASMTL,PDLIM2,MXRA7,B4GAT1,IFT27,ZNHIT1,PHKG2,PMF1,POLR2J,PPP1R16A,LRRC75B,SWSAP1,TBC1D17,RFXANK,ARL3,RAB13,NT5C3B,CLN3,RNH1,POLR2I,G6PC3,EMP3,SHC2,CFAP410,VAMP2,CUEDC1,NUDT14,CTSF,LSM4,DBP,OAZ2,DNAJB2,TMEM99,CCDC102A,RERG,DCTN6,RABAC1,DCXR,UBL5,PSD,GAMT,AK8,EZH1,C8orf82,TTLL1,HAAO,TMEM129,NDUFB7,ING4,UBXN1,RHOC,THYN1,RRAS,PRAF2,PEX16,ETFB,IFT46,EID1,LRRC29,POLL,FAM228B,STOML1,WASHC1,PTMS,NDUFC1,PCBP4,THAP3,MTFR1L,VEGFB,MOSPD3,CLASRP,LYRM1,OAZ1,ATOX1,ANKRD16,MOB2,RNF130,SPATA2L,SPATA20,COMMD6,LZTS2,TMA7,EMC9,MACROD1,KCTD11,SOX12,SPATA24,SORBS3,POLR2E,KLHDC3,CLIP3,BOLA1,TSR3,RPS19BP1,GHDC,HSD17B14,YPEL3,RNASEH2C,PLEKHO1,C3orf33,NSMCE1,PIN1,GALK1,ATP5MC2,SIL1,TSEN34,TUBA1A,RNF5,HOMER3,DGCR6L,REX1BD,FASTK,CYHR1,SIRT6,MAPK3,ECH1,DXO,NR1H2,MRPL54,CCDC57,FAM174C
Exist in public source
NA

check buttonlncRNA targets the promoter region and positively regulates the gene expression.
Only predicted by TDF
NPDC1,CENPB,SULT1A1,SIL1,ECSCR,ABHD11,G6PC3,CNPY4,DHPS,PEX11G,CLPP,CRYL1,PGLS,CLDN23,ENDOG,OXLD1,ATP6AP1,LPAR2,CFAP36,UBXN1,GNB2,SORBS3,PQBP1,CUEDC2,ELOF1,EIF3G,TMEM9,C1orf56,TSPAN4,DYNLRB1,CCDC53,FKBP8,NICN1,BCAT2,PSMB6,UBXN6,TAZ,C2orf81,NSMCE1,C7orf50,GLTSCR2,PIH1D1,MZT2B,TLE2,ATRAID,POLR2L,GPAA1,ALKBH4,VDAC3,NDUFB1,B4GALT7,TMEM8B,TMEM160,TIMM17B,OSCP1,THAP3,VPS28,TUSC2,SRP14,LAMTOR4,C14orf79,PRDX5,CDC34,HINT2,TMEM134,OCEL1,FAM160B2,QTRT1,MYL5,ZCCHC24,PRR14,MANBAL,COX8A,ABHD12,HSCB,NDUFB11,NENF,TBKBP1,CRTC1,RBM42,SUMF1,PPCDC,CLTB,C8orf82,NT5C,ELAC1,B3GALT4,FAM234A,HIGD1B,MACROD1,FBXL8,ECI1,MAGEF1,THOC6,ATPIF1,SCARA3,FAM195B,RPL35,TRIOBP,PKIG,POLR3D,SLC27A1,WDR13,ST6GALNAC6,HCFC1R1,POMT1,BABAM1,AMZ2,ARIH2OS,CAPNS1,TRADD,NPM2,TRMT112,ATP5I,COX4I2,NMRAL1,CIRBP,UBA52
Exist in public source
NA

check buttonlncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for CLN8-AS1

lncrna_RNA
check buttonlncRNA targets the 3'UTR region and negatively regulates the mRNA.
Only predicted by lncTar
CNOT1,IDH3A,TMEM87B,KPNB1,INTS7,CEP55,SCAF11,ESPL1,RIF1,HEATR1,BOD1L1,UTP20,RACGAP1,N4BP2,RNF123,USP15,PMM2,NT5C2,TTK,RALGAPB,EIF4G3,NUP155,UBQLN1,TCF20,RAD1,DNAJC16,QTRT2,TNPO3,DLGAP5,ACTR3,PPP1R12A,DNM2,NOP9,UBR1,EDC4,TAOK3,LARP1,BUB1B,BUB1,GNL3L,TSR1,TPM3,MED14,RBM28,ADAM10,KAT6B,EIF4G1,TUBA1C,IARS1,CUL4A,LMNB1,RRP12,SMG1,POLE,PBRM1,UBE4A,GPATCH2L,CDV3,NUDCD1,ARIH1,DDX46,PUM1,DNAJC11,NR2C2,ELOA,CAP1,ATL2,CLTC,FANCA,FOXN2,ARID2,PARG,ATP2A2,TDG,MCU,KMT2D,DHX8,TRAPPC8,PRRC2C,ATP11B,FUBP1,ECT2,GART,PTPN12,ANAPC1,NOL8,APAF1,PAK2,TAF1,PRRC2A,SET,CCT5,ARHGAP11A,MCM4,DDI2,PPIP5K2,ZDHHC5,EZH2,IQGAP1,G3BP1,DYNC1I2,NCBP1,IREB2,SMARCC1,PIP4K2A,ORC1,AP4E1,CLIP1,TMPO,RAD50,USP48,SLC25A24,DNMT1,DDX23,SEC23A,POLR1A,BPTF,SPDL1,UBE3C,RC3H2,MKLN1,DDX3X,MFSD9,PRKDC,IPO5,SMC3,ITSN2,NCAPG2,SLC25A15,ASXL2,NIPBL,ATXN7,MAPK1,PHF8,KLF13,TRIM25,NUP205,COPB2,FRYL,CLSPN,BORA,CASP2,CYRIB,SLC7A6,MYCBP2,BAZ2A,SF3B1,PIKFYVE,R3HDM1,BRCC3,HELZ2,NIPA2,HSPA9,TDP1,MYOF,LARP4,ROCK2,KNTC1,KLHL18,HSPA14,DNAJC13,ZWILCH,SEC23IP,UHRF1BP1,GALK2,XPO5,EP400,MARCHF7,GNE,CENPE,RBM41,KIF11,LDLR,ADNP2,GALNT7,TTF2,RBM33,SP1,CCNYL1,NUP98,KIAA0586,KMT2B,SMCHD1,TAF1B,MTF1,KDM2A,ACTR2,CCNF,NCOA3,TRIP12,PAXIP1,DIAPH1,NCAPG,USP7,GOLGA4,NUP188,TNPO1,NFAT5,KIF2A,MED1,NUP58,REST,ACLY,EIF4G2,MORC3,PTBP1,CSNK1A1,NIN,CS,CUL2,GON4L,NAA50,JOSD1,CAB39,HEATR5B,PSPC1,HUWE1,TUBGCP3,BIRC6,TEP1,MIS18BP1,KIFC1,CALU,ELF1,DCP2,BACH1,YME1L1,CLINT1,ZNF28,UGGT1,RPE,CARM1,TAF2,PLAA,TRIO,BDP1,SYNRG,SCAF4,HEATR5A,ATP6V0A2,SLC30A7,KIF15,KIF23,THOC2,CPSF2,FNDC3B,CELF1,SPG11,SMC6,TMX3,NEMF,CTPS1,DHX36,STIL,KNL1,IBTK,BAZ1A,CIP2A,POLG,HMGCR,NRDC,MPHOSPH9
Exist in public source
NA

check buttonlncRNA targets the skipped exon region.
-lncRNA and exonskipping events are positively correlated.
lncRNA and exonskipping events positive correlated
LncRNA Ensembl IDLncRNA ENST IDExon IDSkipped ExondGndGGene name with skipped exonTransID with skipped exonORF mutation
ENSG00000253982ENST00000518481exon_skip_21610chr1:9737497-9737554-10.70-0.2184CLSTN1ENST00000377298In-frame
ENSG00000253982ENST00000518481exon_skip_96112chr12:109945259-109945349-13.73-0.1695GIT2ENST00000355312In-frame

-lncRNA and exonskipping events are negatively correlated.
lncRNA and exonskipping events negative correlated
LncRNA Ensembl IDLncRNA ENST IDExon IDSkipped ExondGndGGene name with skipped exonTransID with skipped exonLOF
ENSG00000253982ENST00000518481exon_skip_98384chr12:124327408-124327633-30.37-0.1615NCOR2ENST00000405201In-frame
ENSG00000253982ENST00000518481exon_skip_114200chr14:73279280-73279424-16.51-0.2359NUMBENST00000355058,ENST00000555238In-frame
ENSG00000253982ENST00000518481exon_skip_131398chr15:101286213-101286293-10.25-0.1798SNRPA1ENST00000254193Frame-shift
ENSG00000253982ENST00000518481exon_skip_462144chr6:125298713-125298816-13.79-0.2298HDDC2ENST00000398153Frame-shift
ENSG00000253982ENST00000518481exon_skip_27384chr1:54258068-54258149-17.41-0.2418SSBP3ENST00000371320In-frame

check buttonlncRNA targets by miRNA.
LncRNA Ensembl IDmiRNA IDLncRNA ENST IDBinding site in lncRNAScoreEnergyAlign LenPublic source

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Variants for CLN8-AS1

check buttonRNA A-to-I editing events in lncRNA.
LncRNAediting IDLncRNA Ensembl IDChromosomeEditing PositionStrandGene TypeGene NameTranscript IDTranscript TypeTranscript Name

check buttonEdited-associated DElncRNAs in cancer.
LncRNA Ensembl IDLncRNA IndexCancer TypeChr_Postion_StrandAVE1AVE2log2FCW-valueP-valueAdjc.p-valueChange

check buttonCorrelation between RNA A-to-I editing events's frequecy and lncRNA expression.
LncRNA Ensembl IDLncRNA IndexCorrelationP-valueAdjc.p-value

check buttonCis-expression quantitative trait loci(cis-eQTL) of lncRNA.
LncRNA Ensembl IDLncRNA NameSNP infoNumber of Positive corelated CancerPositive corelated CancerNumber of Negative corelated CancerNegative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncrna_enhancer
check buttonlncRNA regulates differentially expressed genes by function as enhancer.
LncRNA Ensembl IDPC Gene IDPC Gene NamePositive correlated cancersCancer with PC gene up-regulationCancer with PC gene down-regulation
ENSG00000253982ENSG00000088543C3orf18ACC,BRCA,PAAD,READ,STAD,UCECUCEC
ENSG00000253982ENSG00000104695PPP2CBACC,CESC,LGG,LIHC,OV,READ,UCEC,UCS,UVMCESC
ENSG00000253982ENSG00000105379ETFBACC,CHOL,DLBC,KIRP,LGG,THCACHOL
ENSG00000253982ENSG00000108799EZH1ACC,CESC,HNSC,PAAD,UCECCESC,UCEC
ENSG00000253982ENSG00000108840HDAC5ACC,CESC,DLBC,HNSC,PAAD,THCACESC
ENSG00000253982ENSG00000126088URODACC,BRCA,CHOL,DLBC,GBM,KICH,KIRC,KIRP,PAAD,SKCM,THCACHOL
ENSG00000253982ENSG00000133872SARAFACC,BLCA,CESC,CHOL,COAD,DLBC,GBM,HNSC,KICH,KIRC,LIHC,OV,PAAD,READ,SARC,THCA,UCECCESC
ENSG00000253982ENSG00000134533RERGACC,CESC,GBM,READ,STAD,TGCT,UCECCESC,UCEC
ENSG00000253982ENSG00000147419CCDC25ACC,BLCA,BRCA,CESC,HNSC,KIRC,LIHC,PAAD,READLIHC
ENSG00000253982ENSG00000150281CTF1ACC,BLCA,CESC,CHOL,GBM,HNSC,STAD,TGCT,THCA,THYM,UVMCESC
ENSG00000253982ENSG00000154359LONRF1ACC,BLCA,CESC,COAD,ESCA,HNSC,PAAD,READ,THYM,UCSCESC
ENSG00000253982ENSG00000166313APBB1ACC,CESC,HNSC,PAAD,STAD,UCEC,UVMCESC,UCEC
ENSG00000253982ENSG00000166997CNPY4ACC,CESC,PAAD,READ,TGCT,THCACESC
ENSG00000253982ENSG00000170296GABARAPACC,BRCA,CESC,CHOL,DLBC,ESCA,GBM,HNSC,KIRP,LGG,PAAD,STAD,TGCT,THCA,UVMCESC
ENSG00000253982ENSG00000174516PELI3ACC,CHOL,DLBC,HNSC,KIRC,PAAD,STAD,TGCT,UCECUCEC
ENSG00000253982ENSG00000175806MSRAACC,BLCA,HNSC,KIRC,LGG,LIHC,OV,READ,SKCM,TGCT,THCA,UVMLIHC
ENSG00000253982ENSG00000181513ACBD4ACC,BLCA,BRCA,CESC,CHOL,DLBC,GBM,HNSC,LGG,PAAD,READ,TGCT,THCA,UCECCESC,CHOL
ENSG00000253982ENSG00000087076HSD17B14BLCA,CESC,DLBC,HNSC,KIRC,LGG,PAAD,THYMCESC
ENSG00000253982ENSG00000125652ALKBH7BLCA,BRCA,CHOL,DLBC,ESCA,HNSC,KICH,KIRP,LGG,SKCM,THCACHOL
ENSG00000253982ENSG00000137103TMEM8BBLCA,CESC,HNSC,PAAD,TGCT,UVMCESC
ENSG00000253982ENSG00000167740CYB5D2BLCA,BRCA,CESC,GBM,HNSC,KIRP,PAAD,THCA,THYMCESC
ENSG00000253982ENSG00000174080CTSFBLCA,CESC,DLBC,GBM,HNSC,LGG,PAAD,READ,STAD,THCACESC
ENSG00000253982ENSG00000183617MRPL54BLCA,BRCA,CHOL,DLBC,HNSC,KIRC,KIRP,OV,PAAD,THCACHOL
ENSG00000253982ENSG00000248487ABHD14ABLCA,BRCA,CHOL,DLBC,HNSC,KICH,LAML,PAAD,STAD,TGCT,THCA,THYMCHOL
ENSG00000253982ENSG00000008382MPNDBRCA,CHOL,DLBC,HNSC,TGCTCHOL
ENSG00000253982ENSG00000120896SORBS3BRCA,CESC,CHOL,DLBC,ESCA,HNSC,LAML,LGG,LIHC,PAAD,READ,SKCM,STAD,TGCT,THCA,THYM,UCEC,UCS,UVMCESC,CHOL
ENSG00000253982ENSG00000124104SNX21BRCA,CESC,DLBC,SKCM,UCECCESC,UCEC
ENSG00000253982ENSG00000131477RAMP2BRCA,CESC,DLBC,HNSC,PAAD,STAD,TGCT,THCA,UCECCESC,UCEC
ENSG00000253982ENSG00000140691ARMC5BRCA,CHOL,DLBC,HNSC,PAAD,THCA,THYMCHOL
ENSG00000253982ENSG00000148290SURF1BRCA,CHOL,DLBC,GBM,HNSC,KIRC,KIRP,LGG,PAAD,SKCM,THCACHOL
ENSG00000253982ENSG00000164088PPM1MBRCA,CESC,GBM,HNSC,READ,UCEC,UVMCESC
ENSG00000253982ENSG00000175573C11orf68BRCA,CESC,CHOL,DLBC,LAML,LGG,STAD,TGCT,THCA,THYM,UCEC,UVMCESC
ENSG00000253982ENSG00000178498DTX3BRCA,CESC,CHOL,ESCA,HNSC,PAAD,STAD,TGCT,THCA,UCS,UVMCESC
ENSG00000253982ENSG00000185187SIGIRRBRCA,CHOL,DLBC,HNSC,LAML,THCACHOL
ENSG00000253982ENSG00000214941ZSWIM7BRCA,CESC,CHOL,GBM,HNSC,KIRC,KIRP,LIHC,READ,THCA,THYM,UCECCESC
ENSG00000253982ENSG00000011465DCNCESC,GBM,READ,TGCT,UCECCESC,UCEC
ENSG00000253982ENSG00000053702NRIP2CESC,DLBC,PAAD,TGCT,THCA,UCECCESC,UCEC
ENSG00000253982ENSG00000063180CA11CESC,CHOL,ESCA,HNSC,PAAD,READ,STAD,TGCT,THCA,UCECCESC,UCEC
ENSG00000253982ENSG00000100307CBX7CESC,HNSC,PAAD,THCA,UCECCESC,UCEC
ENSG00000253982ENSG00000102181CD99L2CESC,HNSC,PAAD,TGCT,UCECCESC,UCEC
ENSG00000253982ENSG00000102897LYRM1CESC,GBM,HNSC,LGG,THCACESC
ENSG00000253982ENSG00000103710RASL12CESC,PAAD,TGCT,THCA,UCECCESC,UCEC
ENSG00000253982ENSG00000105270CLIP3CESC,PAAD,READ,STAD,TGCT,UCECCESC,UCEC
ENSG00000253982ENSG00000117640MTFR1LCESC,HNSC,KIRC,KIRP,PAAD,READ,TGCT,THCA,THYM,UCEC,UCSCESC
ENSG00000253982ENSG00000119865CNRIP1CESC,PAAD,READ,STAD,TGCT,UCECCESC,UCEC
ENSG00000253982ENSG00000131831RAI2CESC,HNSC,PAAD,STAD,TGCTCESC
ENSG00000253982ENSG00000140682TGFB1I1CESC,READ,STAD,TGCT,UCEC,UVMCESC,UCEC
ENSG00000253982ENSG00000163815CLEC3BCESC,PAAD,READ,THCA,UCECCESC,UCEC
ENSG00000253982ENSG00000165424ZCCHC24CESC,READ,STAD,TGCT,UCECCESC,UCEC
ENSG00000253982ENSG00000166848TERF2IPCESC,DLBC,ESCA,PAAD,STAD,THCA,UCECCESC
ENSG00000253982ENSG00000176435CLEC14ACESC,PAAD,TGCT,THCA,UCECCESC,UCEC
ENSG00000253982ENSG00000220205VAMP2CESC,DLBC,HNSC,LAML,PAAD,STAD,TGCT,THYM,UCEC,UVMCESC,UCEC
ENSG00000253982ENSG00000240771ARHGEF25CESC,CHOL,ESCA,HNSC,READ,STAD,TGCT,UCECCESC,UCEC
ENSG00000253982ENSG00000255302EID1CESC,COAD,PAAD,READ,STAD,TGCT,THCA,UCECCESC,UCEC
ENSG00000253982ENSG00000271601LIX1LCESC,READ,STAD,TGCT,UCECCESC,UCEC
ENSG00000253982ENSG00000113269RNF130CHOL,DLBC,GBM,HNSC,SARCCHOL
ENSG00000253982ENSG00000120885CLUCHOL,DLBC,GBM,LIHC,PAADCHOL
ENSG00000253982ENSG00000130312MRPL34CHOL,DLBC,HNSC,KIRC,KIRP,PAAD,THCACHOL
ENSG00000253982ENSG00000154723ATP5PFCHOL,ESCA,GBM,HNSC,THCACHOL
ENSG00000253982ENSG00000159335PTMSCHOL,DLBC,HNSC,LAML,PAAD,STAD,TGCT,THCA,THYM,UCSCHOL
ENSG00000253982ENSG00000167397VKORC1CHOL,DLBC,ESCA,GBM,LAML,OV,PAAD,READ,STAD,THCACHOL
ENSG00000253982ENSG00000174684B4GAT1CHOL,PAAD,TGCT,THCA,THYM,UCEC,UVMUCEC
ENSG00000253982ENSG00000176209SMIM19CHOL,DLBC,GBM,HNSC,KICH,KIRC,KIRP,LGG,THCA,THYMCHOL
ENSG00000253982ENSG00000005243COPZ2COAD,DLBC,GBM,READ,SKCM,STAD,TGCT,UCECUCEC
ENSG00000253982ENSG00000059915PSDDLBC,PAAD,READ,TGCT,UCECUCEC
ENSG00000253982ENSG00000142227EMP3DLBC,LAML,READ,TGCT,UCECUCEC
ENSG00000253982ENSG00000249751ECSCRDLBC,PAAD,TGCT,THCA,UCECUCEC
ENSG00000253982ENSG00000183741CBX6LAML,PAAD,STAD,TGCT,UCECUCEC
ENSG00000253982ENSG00000160408ST6GALNAC6PAAD,STAD,TGCT,THCA,UCEC,UVMUCEC
ENSG00000253982ENSG00000182534MXRA7PAAD,READ,STAD,TGCT,THCA,UCECUCEC

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lncRNAs regulate the target genes through recruiting transcript factors

lncrna_TF
check buttonLncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).
lncRNA IDTF IDTF NamePCgene IDPCgene NameNumber of CancerCanaer Types

check buttonLncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).
lncRNA IDTF IDTF NamePCgene IDPCgene NameNumber of CancerCanaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

lncrna_AS
check buttonLncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.
LncRNA Ensembl IDRBP IDRBP Gene NameExon Skipping IDSkipped ExonEX Gene NameEX Affected TransIDORF_annoCancer Type

check buttonLncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.
LncRNA Ensembl IDRBP IDRBP Gene NameExon Skipping IDSkipped ExonEX Gene NameEX Affected TransIDORF_annoCancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncrna_mRNA
check buttonlncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.
LncRNA Ensembl IDLncRNA ENST IDPC Gene NamePC Gene IDPC ENST IDdGnDGCancer with PC gene up-regulationCancer with PC gene Down-regulation
ENSG00000253982ENST00000518481DIAPH1ENSG00000131504ENST00000389054-0.10521CESC-
ENSG00000253982ENST00000518481DIAPH1ENSG00000131504ENST00000253811-0.10521CESC-
ENSG00000253982ENST00000518481DIAPH1ENSG00000131504ENST00000389057-0.10521CESC-
ENSG00000253982ENST00000518481DIAPH1ENSG00000131504ENST00000398557-0.10521CESC-
ENSG00000253982ENST00000518481DIAPH1ENSG00000131504ENST00000518047-0.10521CESC-
ENSG00000253982ENST00000518822MFSD9ENSG00000135953ENST00000421966-0.1107389UCEC-
ENSG00000253982ENST00000517959MFSD9ENSG00000135953ENST00000428085-0.12981UCEC-
ENSG00000253982ENST00000517959MFSD9ENSG00000135953ENST00000421966-0.1107419UCEC-
ENSG00000253982ENST00000518481MFSD9ENSG00000135953ENST00000428085-0.102184UCEC-
ENSG00000253982ENST00000518481MFSD9ENSG00000135953ENST00000421966-0.10821UCEC-
ENSG00000253982ENST00000518822GALNT7ENSG00000109586ENST00000503213-0.138270CHOL,UCEC-
ENSG00000253982ENST00000517959GALNT7ENSG00000109586ENST00000503213-0.1382100CHOL,UCEC-
ENSG00000253982ENST00000518481GALNT7ENSG00000109586ENST00000503213-0.201597CHOL,UCEC-

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lncRNAs regulate mRNA by competing with miRNA

lncrna_miRNA
check buttonlncRNA regulates mRNA by competing the miRNA binding site with mRNA.
LncRNA Ensembl IDlncRNA-miRNA-mRNACancer Types

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lncRNA coding potential

check buttonORFfinder result for the gencode.v22.lncRNA.transcript.fa.
lncRNA Ensembl IDlncRNA ENST IDlength(AA)start at transcriptend at transcript
ENSG00000253982.1ENST00000518822.13021399491
ENSG00000253982.1ENST00000517959.156819649
ENSG00000253982.1ENST00000518481.156849679