lncRNA targets the enhancer region and positively regulates the gene expression. |
Only predicted by TDF | FKBP8,ARL16,UXT,TCEA2,NDUFS3,CTF1,ABHD17A,BLVRB,IFT22,C12orf57,CIRBP,PET100,DYNC2LI1,WDR83OS,C1orf56,SHARPIN,DPM2,SIRT3,PPP2R3B,HINT2,ACD,POLR3D,DPP7,TIMM17B,MIEF2,B3GAT3,ISCU,CENPB,PIGP,NDUFA11,PRKAR1B,STK16,SNRPA,WDR54,TRAPPC2L,HIRIP3,FAAP20,COMMD7,COA3,LAMTOR2,PELI3,TERF2IP,EIF3G,PMM1,NDUFA3,SVBP,CLEC14A,MICOS13,TAZ,NAA80,SIGIRR,NABP2,FAM104B,NDUFB2,SARAF,RNF167,GTF2H5,USE1,CYB5D2,LIX1L,TMEM208,RAB4B,RNF187,CA11,ERI3,VKORC1,CISD3,RING1,SLC22A17,PSENEN,UROD,CBY1,WDR83,TIMMDC1,C3orf18,DHPS,WASHC3,BABAM1,GPR137,PIH1D1,RASIP1,TSSC4,B3GALT6,DDX49,INO80E,COMT,RBM42,YJU2,CBX7,TMEM101,CCDC28A,C17orf97,COPZ2,RPL35,NDUFA2,BORCS6,CLPP,TMEM160,LPAR2,FDX2,MCAT,FUZ,ESS2,TM2D2,RTL8B,TSC22D4,MTLN,FBXW4,FAM229B,MRPL57,PAFAH1B3,TNKS,CBX6,C2orf76,IL17RC,DCN,LRTOMT,COX6C,UBTD1,CCDC159,HMGN3,NDUFB1,NR1H3,CCAR2,CZIB,MLF2,MPG,TSPAN4,HDAC5,ELOF1,HEXD,SDHAF2,EEFSEC,IDH3B,PMVK,ANAPC11,SKP1,GABARAP,CCDC12,ILVBL,PTRHD1,TDRP,CLTB,MCRIP1,PHYHD1,LONRF1,CLU,ABHD8,ISCA2,TRIR,JMJD4,MRPL52,PRADC1,MMAB,ADSS1,FCGRT,DNAJC4,ADI1,MRPL55,HMGCL,CCDC28B,NMRAL1,NDUFB8,SH2B1,SSR4,SNRNP25,CRIP2,PRR3,FAM98C,TECR,NICN1,CRYL1,PPOX,CD63,SWI5,NDUFB11,IFTAP,C19orf53,TAX1BP3,GUK1,MRPL28,HSCB,ADPRM,HPF1,ACYP2,APBB1,LSM3,CTDSP1,ZNF25,C8orf58,SURF1,PPP2CB,PLD3,ASAH1,ELP3,NUBP2,TMEM175,GNPTG,C11orf68,TMEM8B,COMMD9,BCAP31,FIS1,CTDNEP1,GTPBP6,MRPL24,SPACA9,MSRB1,SMPD2,UBL7,EFEMP2,CHCHD2,NPDC1,NAA38,ABHD12,NME4,JTB,TCTA,SHISA4,CWC15,CCDC106,EMD,TOLLIP,FBXO44,NELFE,DOHH,EXD3,P4HTM,PCED1A,PRRT3,MAF1,STX8,TUSC2,EVA1B,MVB12A,ELP5,FN3K,TBCB,CHMP2A,SYCE1L,LMF1,THOC6,UBOX5,MPND,GATB,PQBP1,LENG1,PRCP,DENND6B,PEX11G,TRADD,IFI27L2,TLE2,SGF29,POLR2L,SERF2,VPS28,COMMD1,TRPT1,TATDN2,NUDT22,POMGNT2,CD2BP2,RABEP2,TMEM218,PTOV1,ALKBH4,PYURF,CCDC25,FBXL8,CNOT7,IDUA,TMEM134,POP5,CDIPT,ORAI3,TMEM91,GDI1,MYL5,UBXN6,SOD1,CNPY4,SULT1A1,CUEDC2,METTL26,SCAND1,COX14,DECR1,TCF25,SRR,UBXN11,HSPBP1,HAGH,CCDC71,ATP6AP1,B9D1,PPCDC,CROCC,CERS5,NCAPH2,ATPAF2,AKR7A2,COPRS,ARHGEF25,TRIOBP,JOSD2,AMZ2,EMC10,TMEM187,SPAG7,ENKD1,FAM3A,ATP5IF1,ZDHHC1,ACADS,BLOC1S1,SUMF1,C11orf1,MORN2,ATP5F1E,CLEC3B,MSRA,ZBTB4,MYPOP,MRPL34,POMT1,MEIS3,ARF5,CDPF1,NAT14,P3H3,DNPH1,C1orf35,LSM10,TIMM13,NME5,TMEM150A,NPRL2,SNX17,DCAKD,HDAC11,GFER,ZMYND12,HHLA3,MIEN1,LSM5,H2AJ,BCAT2,TP53I13,COQ4,WDR45,B4GALT7,CHST14,COPS9,CNRIP1,DHRS12,ZMAT5,STX10,PHLDB3,ECI1,ARMC5,ST6GALNAC6,ACBD4,SNU13,LRRC23,RBPMS,COPE,FAM50A,BAD,RAMP2,ELP6,ALKBH7,ZNF34,TMEM258,MYL6,KLHDC8B,SUOX,C9orf116,MZT2B,PHF1,SNX21,CETN2,ABHD11,TMC4,HDAC10,DEAF1,CHADL,SCRN2,HSF4,ANKS3,ATRAID,NOXA1,UCK1,SMDT1,PIGQ,TXNRD2,RASSF7,LAMTOR1,VMAC,TAF10,COX4I1,TMEM60,NFKBIL1,LRPAP1,ECSIT,CENPS,B3GALT4,ZCCHC24,MZT2A,RASL12,PPM1M,INTS9,CIAO2B,MCRIP2,MAGIX,BRAT1,AAMDC,GPAA1,MRPL27,MYL6B,C19orf25,RILP,FAM234A,ARPC4,DTX3,ERCC1,RNF215,TLE5,NDUFA1,ABHD14A,KLHL22,PHLDA3,TPGS1,TMEM25,COA5,ECSCR,BTBD2,ATP5F1D,SMARCD3,ATP5PF,UBE2M,MRPL43,APRT,TOMM7,HEBP1,ECHS1,NRIP2,CNTROB,RAI2,BDH2,B9D2,NOP53,IRF2BP1,SMIM19,WBP1,NDUFAF8,FKBP2,NDUFB10,DDRGK1,PRDX5,UBA52,NUDT16L1,C15orf61,TMEM115,TXN2,MRPS26,HDDC3,ARMCX6,SMIM1,IMP3,SERGEF,NDUFA13,C7orf50,C1orf122,DCTN3,COQ8B,RRNAD1,CD99L2,SNRPD2,TGFB1I1,ZSWIM7,SLC25A11,BIN3,RP11-523H20.5,NAGLU,MIF4GD,HSD17B8,OSCP1,NDUFA4,BCL7C,OBSL1,MFSD10,CD81,TMEM9,ASMTL,PDLIM2,MXRA7,B4GAT1,IFT27,ZNHIT1,PHKG2,PMF1,POLR2J,PPP1R16A,LRRC75B,SWSAP1,TBC1D17,RFXANK,ARL3,RAB13,NT5C3B,CLN3,RNH1,POLR2I,G6PC3,EMP3,SHC2,CFAP410,VAMP2,CUEDC1,NUDT14,CTSF,LSM4,DBP,OAZ2,DNAJB2,TMEM99,CCDC102A,RERG,DCTN6,RABAC1,DCXR,UBL5,PSD,GAMT,AK8,EZH1,C8orf82,TTLL1,HAAO,TMEM129,NDUFB7,ING4,UBXN1,RHOC,THYN1,RRAS,PRAF2,PEX16,ETFB,IFT46,EID1,LRRC29,POLL,FAM228B,STOML1,WASHC1,PTMS,NDUFC1,PCBP4,THAP3,MTFR1L,VEGFB,MOSPD3,CLASRP,LYRM1,OAZ1,ATOX1,ANKRD16,MOB2,RNF130,SPATA2L,SPATA20,COMMD6,LZTS2,TMA7,EMC9,MACROD1,KCTD11,SOX12,SPATA24,SORBS3,POLR2E,KLHDC3,CLIP3,BOLA1,TSR3,RPS19BP1,GHDC,HSD17B14,YPEL3,RNASEH2C,PLEKHO1,C3orf33,NSMCE1,PIN1,GALK1,ATP5MC2,SIL1,TSEN34,TUBA1A,RNF5,HOMER3,DGCR6L,REX1BD,FASTK,CYHR1,SIRT6,MAPK3,ECH1,DXO,NR1H2,MRPL54,CCDC57,FAM174C | Exist in public source | NA |
lncRNA targets the promoter region and positively regulates the gene expression. |
Only predicted by TDF | NPDC1,CENPB,SULT1A1,SIL1,ECSCR,ABHD11,G6PC3,CNPY4,DHPS,PEX11G,CLPP,CRYL1,PGLS,CLDN23,ENDOG,OXLD1,ATP6AP1,LPAR2,CFAP36,UBXN1,GNB2,SORBS3,PQBP1,CUEDC2,ELOF1,EIF3G,TMEM9,C1orf56,TSPAN4,DYNLRB1,CCDC53,FKBP8,NICN1,BCAT2,PSMB6,UBXN6,TAZ,C2orf81,NSMCE1,C7orf50,GLTSCR2,PIH1D1,MZT2B,TLE2,ATRAID,POLR2L,GPAA1,ALKBH4,VDAC3,NDUFB1,B4GALT7,TMEM8B,TMEM160,TIMM17B,OSCP1,THAP3,VPS28,TUSC2,SRP14,LAMTOR4,C14orf79,PRDX5,CDC34,HINT2,TMEM134,OCEL1,FAM160B2,QTRT1,MYL5,ZCCHC24,PRR14,MANBAL,COX8A,ABHD12,HSCB,NDUFB11,NENF,TBKBP1,CRTC1,RBM42,SUMF1,PPCDC,CLTB,C8orf82,NT5C,ELAC1,B3GALT4,FAM234A,HIGD1B,MACROD1,FBXL8,ECI1,MAGEF1,THOC6,ATPIF1,SCARA3,FAM195B,RPL35,TRIOBP,PKIG,POLR3D,SLC27A1,WDR13,ST6GALNAC6,HCFC1R1,POMT1,BABAM1,AMZ2,ARIH2OS,CAPNS1,TRADD,NPM2,TRMT112,ATP5I,COX4I2,NMRAL1,CIRBP,UBA52 | Exist in public source | NA |
lncRNA targets the promoter region and negatively regulates the gene expression. |
lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
Only predicted by lncTar | CNOT1,IDH3A,TMEM87B,KPNB1,INTS7,CEP55,SCAF11,ESPL1,RIF1,HEATR1,BOD1L1,UTP20,RACGAP1,N4BP2,RNF123,USP15,PMM2,NT5C2,TTK,RALGAPB,EIF4G3,NUP155,UBQLN1,TCF20,RAD1,DNAJC16,QTRT2,TNPO3,DLGAP5,ACTR3,PPP1R12A,DNM2,NOP9,UBR1,EDC4,TAOK3,LARP1,BUB1B,BUB1,GNL3L,TSR1,TPM3,MED14,RBM28,ADAM10,KAT6B,EIF4G1,TUBA1C,IARS1,CUL4A,LMNB1,RRP12,SMG1,POLE,PBRM1,UBE4A,GPATCH2L,CDV3,NUDCD1,ARIH1,DDX46,PUM1,DNAJC11,NR2C2,ELOA,CAP1,ATL2,CLTC,FANCA,FOXN2,ARID2,PARG,ATP2A2,TDG,MCU,KMT2D,DHX8,TRAPPC8,PRRC2C,ATP11B,FUBP1,ECT2,GART,PTPN12,ANAPC1,NOL8,APAF1,PAK2,TAF1,PRRC2A,SET,CCT5,ARHGAP11A,MCM4,DDI2,PPIP5K2,ZDHHC5,EZH2,IQGAP1,G3BP1,DYNC1I2,NCBP1,IREB2,SMARCC1,PIP4K2A,ORC1,AP4E1,CLIP1,TMPO,RAD50,USP48,SLC25A24,DNMT1,DDX23,SEC23A,POLR1A,BPTF,SPDL1,UBE3C,RC3H2,MKLN1,DDX3X,MFSD9,PRKDC,IPO5,SMC3,ITSN2,NCAPG2,SLC25A15,ASXL2,NIPBL,ATXN7,MAPK1,PHF8,KLF13,TRIM25,NUP205,COPB2,FRYL,CLSPN,BORA,CASP2,CYRIB,SLC7A6,MYCBP2,BAZ2A,SF3B1,PIKFYVE,R3HDM1,BRCC3,HELZ2,NIPA2,HSPA9,TDP1,MYOF,LARP4,ROCK2,KNTC1,KLHL18,HSPA14,DNAJC13,ZWILCH,SEC23IP,UHRF1BP1,GALK2,XPO5,EP400,MARCHF7,GNE,CENPE,RBM41,KIF11,LDLR,ADNP2,GALNT7,TTF2,RBM33,SP1,CCNYL1,NUP98,KIAA0586,KMT2B,SMCHD1,TAF1B,MTF1,KDM2A,ACTR2,CCNF,NCOA3,TRIP12,PAXIP1,DIAPH1,NCAPG,USP7,GOLGA4,NUP188,TNPO1,NFAT5,KIF2A,MED1,NUP58,REST,ACLY,EIF4G2,MORC3,PTBP1,CSNK1A1,NIN,CS,CUL2,GON4L,NAA50,JOSD1,CAB39,HEATR5B,PSPC1,HUWE1,TUBGCP3,BIRC6,TEP1,MIS18BP1,KIFC1,CALU,ELF1,DCP2,BACH1,YME1L1,CLINT1,ZNF28,UGGT1,RPE,CARM1,TAF2,PLAA,TRIO,BDP1,SYNRG,SCAF4,HEATR5A,ATP6V0A2,SLC30A7,KIF15,KIF23,THOC2,CPSF2,FNDC3B,CELF1,SPG11,SMC6,TMX3,NEMF,CTPS1,DHX36,STIL,KNL1,IBTK,BAZ1A,CIP2A,POLG,HMGCR,NRDC,MPHOSPH9 | Exist in public source | NA |
lncRNA targets the skipped exon region. | -lncRNA and exonskipping events are positively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | ENSG00000253982 | ENST00000518481 | exon_skip_21610 | chr1:9737497-9737554 | -10.70 | -0.2184 | CLSTN1 | ENST00000377298 | In-frame | ENSG00000253982 | ENST00000518481 | exon_skip_96112 | chr12:109945259-109945349 | -13.73 | -0.1695 | GIT2 | ENST00000355312 | In-frame |
-lncRNA and exonskipping events are negatively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | ENSG00000253982 | ENST00000518481 | exon_skip_98384 | chr12:124327408-124327633 | -30.37 | -0.1615 | NCOR2 | ENST00000405201 | In-frame | ENSG00000253982 | ENST00000518481 | exon_skip_114200 | chr14:73279280-73279424 | -16.51 | -0.2359 | NUMB | ENST00000355058,ENST00000555238 | In-frame | ENSG00000253982 | ENST00000518481 | exon_skip_131398 | chr15:101286213-101286293 | -10.25 | -0.1798 | SNRPA1 | ENST00000254193 | Frame-shift | ENSG00000253982 | ENST00000518481 | exon_skip_462144 | chr6:125298713-125298816 | -13.79 | -0.2298 | HDDC2 | ENST00000398153 | Frame-shift | ENSG00000253982 | ENST00000518481 | exon_skip_27384 | chr1:54258068-54258149 | -17.41 | -0.2418 | SSBP3 | ENST00000371320 | In-frame |
lncRNA targets by miRNA. |
LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
RNA A-to-I editing events in lncRNA. |
LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
Edited-associated DElncRNAs in cancer. |
LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
lncRNA regulates differentially expressed genes by function as enhancer. |
LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation | ENSG00000253982 | ENSG00000088543 | C3orf18 | ACC,BRCA,PAAD,READ,STAD,UCEC | | UCEC | ENSG00000253982 | ENSG00000104695 | PPP2CB | ACC,CESC,LGG,LIHC,OV,READ,UCEC,UCS,UVM | | CESC | ENSG00000253982 | ENSG00000105379 | ETFB | ACC,CHOL,DLBC,KIRP,LGG,THCA | | CHOL | ENSG00000253982 | ENSG00000108799 | EZH1 | ACC,CESC,HNSC,PAAD,UCEC | | CESC,UCEC | ENSG00000253982 | ENSG00000108840 | HDAC5 | ACC,CESC,DLBC,HNSC,PAAD,THCA | | CESC | ENSG00000253982 | ENSG00000126088 | UROD | ACC,BRCA,CHOL,DLBC,GBM,KICH,KIRC,KIRP,PAAD,SKCM,THCA | | CHOL | ENSG00000253982 | ENSG00000133872 | SARAF | ACC,BLCA,CESC,CHOL,COAD,DLBC,GBM,HNSC,KICH,KIRC,LIHC,OV,PAAD,READ,SARC,THCA,UCEC | | CESC | ENSG00000253982 | ENSG00000134533 | RERG | ACC,CESC,GBM,READ,STAD,TGCT,UCEC | | CESC,UCEC | ENSG00000253982 | ENSG00000147419 | CCDC25 | ACC,BLCA,BRCA,CESC,HNSC,KIRC,LIHC,PAAD,READ | | LIHC | ENSG00000253982 | ENSG00000150281 | CTF1 | ACC,BLCA,CESC,CHOL,GBM,HNSC,STAD,TGCT,THCA,THYM,UVM | | CESC | ENSG00000253982 | ENSG00000154359 | LONRF1 | ACC,BLCA,CESC,COAD,ESCA,HNSC,PAAD,READ,THYM,UCS | | CESC | ENSG00000253982 | ENSG00000166313 | APBB1 | ACC,CESC,HNSC,PAAD,STAD,UCEC,UVM | | CESC,UCEC | ENSG00000253982 | ENSG00000166997 | CNPY4 | ACC,CESC,PAAD,READ,TGCT,THCA | | CESC | ENSG00000253982 | ENSG00000170296 | GABARAP | ACC,BRCA,CESC,CHOL,DLBC,ESCA,GBM,HNSC,KIRP,LGG,PAAD,STAD,TGCT,THCA,UVM | | CESC | ENSG00000253982 | ENSG00000174516 | PELI3 | ACC,CHOL,DLBC,HNSC,KIRC,PAAD,STAD,TGCT,UCEC | | UCEC | ENSG00000253982 | ENSG00000175806 | MSRA | ACC,BLCA,HNSC,KIRC,LGG,LIHC,OV,READ,SKCM,TGCT,THCA,UVM | | LIHC | ENSG00000253982 | ENSG00000181513 | ACBD4 | ACC,BLCA,BRCA,CESC,CHOL,DLBC,GBM,HNSC,LGG,PAAD,READ,TGCT,THCA,UCEC | | CESC,CHOL | ENSG00000253982 | ENSG00000087076 | HSD17B14 | BLCA,CESC,DLBC,HNSC,KIRC,LGG,PAAD,THYM | | CESC | ENSG00000253982 | ENSG00000125652 | ALKBH7 | BLCA,BRCA,CHOL,DLBC,ESCA,HNSC,KICH,KIRP,LGG,SKCM,THCA | | CHOL | ENSG00000253982 | ENSG00000137103 | TMEM8B | BLCA,CESC,HNSC,PAAD,TGCT,UVM | | CESC | ENSG00000253982 | ENSG00000167740 | CYB5D2 | BLCA,BRCA,CESC,GBM,HNSC,KIRP,PAAD,THCA,THYM | | CESC | ENSG00000253982 | ENSG00000174080 | CTSF | BLCA,CESC,DLBC,GBM,HNSC,LGG,PAAD,READ,STAD,THCA | | CESC | ENSG00000253982 | ENSG00000183617 | MRPL54 | BLCA,BRCA,CHOL,DLBC,HNSC,KIRC,KIRP,OV,PAAD,THCA | | CHOL | ENSG00000253982 | ENSG00000248487 | ABHD14A | BLCA,BRCA,CHOL,DLBC,HNSC,KICH,LAML,PAAD,STAD,TGCT,THCA,THYM | | CHOL | ENSG00000253982 | ENSG00000008382 | MPND | BRCA,CHOL,DLBC,HNSC,TGCT | | CHOL | ENSG00000253982 | ENSG00000120896 | SORBS3 | BRCA,CESC,CHOL,DLBC,ESCA,HNSC,LAML,LGG,LIHC,PAAD,READ,SKCM,STAD,TGCT,THCA,THYM,UCEC,UCS,UVM | | CESC,CHOL | ENSG00000253982 | ENSG00000124104 | SNX21 | BRCA,CESC,DLBC,SKCM,UCEC | | CESC,UCEC | ENSG00000253982 | ENSG00000131477 | RAMP2 | BRCA,CESC,DLBC,HNSC,PAAD,STAD,TGCT,THCA,UCEC | | CESC,UCEC | ENSG00000253982 | ENSG00000140691 | ARMC5 | BRCA,CHOL,DLBC,HNSC,PAAD,THCA,THYM | | CHOL | ENSG00000253982 | ENSG00000148290 | SURF1 | BRCA,CHOL,DLBC,GBM,HNSC,KIRC,KIRP,LGG,PAAD,SKCM,THCA | | CHOL | ENSG00000253982 | ENSG00000164088 | PPM1M | BRCA,CESC,GBM,HNSC,READ,UCEC,UVM | | CESC | ENSG00000253982 | ENSG00000175573 | C11orf68 | BRCA,CESC,CHOL,DLBC,LAML,LGG,STAD,TGCT,THCA,THYM,UCEC,UVM | | CESC | ENSG00000253982 | ENSG00000178498 | DTX3 | BRCA,CESC,CHOL,ESCA,HNSC,PAAD,STAD,TGCT,THCA,UCS,UVM | | CESC | ENSG00000253982 | ENSG00000185187 | SIGIRR | BRCA,CHOL,DLBC,HNSC,LAML,THCA | | CHOL | ENSG00000253982 | ENSG00000214941 | ZSWIM7 | BRCA,CESC,CHOL,GBM,HNSC,KIRC,KIRP,LIHC,READ,THCA,THYM,UCEC | | CESC | ENSG00000253982 | ENSG00000011465 | DCN | CESC,GBM,READ,TGCT,UCEC | | CESC,UCEC | ENSG00000253982 | ENSG00000053702 | NRIP2 | CESC,DLBC,PAAD,TGCT,THCA,UCEC | | CESC,UCEC | ENSG00000253982 | ENSG00000063180 | CA11 | CESC,CHOL,ESCA,HNSC,PAAD,READ,STAD,TGCT,THCA,UCEC | | CESC,UCEC | ENSG00000253982 | ENSG00000100307 | CBX7 | CESC,HNSC,PAAD,THCA,UCEC | | CESC,UCEC | ENSG00000253982 | ENSG00000102181 | CD99L2 | CESC,HNSC,PAAD,TGCT,UCEC | | CESC,UCEC | ENSG00000253982 | ENSG00000102897 | LYRM1 | CESC,GBM,HNSC,LGG,THCA | | CESC | ENSG00000253982 | ENSG00000103710 | RASL12 | CESC,PAAD,TGCT,THCA,UCEC | | CESC,UCEC | ENSG00000253982 | ENSG00000105270 | CLIP3 | CESC,PAAD,READ,STAD,TGCT,UCEC | | CESC,UCEC | ENSG00000253982 | ENSG00000117640 | MTFR1L | CESC,HNSC,KIRC,KIRP,PAAD,READ,TGCT,THCA,THYM,UCEC,UCS | | CESC | ENSG00000253982 | ENSG00000119865 | CNRIP1 | CESC,PAAD,READ,STAD,TGCT,UCEC | | CESC,UCEC | ENSG00000253982 | ENSG00000131831 | RAI2 | CESC,HNSC,PAAD,STAD,TGCT | | CESC | ENSG00000253982 | ENSG00000140682 | TGFB1I1 | CESC,READ,STAD,TGCT,UCEC,UVM | | CESC,UCEC | ENSG00000253982 | ENSG00000163815 | CLEC3B | CESC,PAAD,READ,THCA,UCEC | | CESC,UCEC | ENSG00000253982 | ENSG00000165424 | ZCCHC24 | CESC,READ,STAD,TGCT,UCEC | | CESC,UCEC | ENSG00000253982 | ENSG00000166848 | TERF2IP | CESC,DLBC,ESCA,PAAD,STAD,THCA,UCEC | | CESC | ENSG00000253982 | ENSG00000176435 | CLEC14A | CESC,PAAD,TGCT,THCA,UCEC | | CESC,UCEC | ENSG00000253982 | ENSG00000220205 | VAMP2 | CESC,DLBC,HNSC,LAML,PAAD,STAD,TGCT,THYM,UCEC,UVM | | CESC,UCEC | ENSG00000253982 | ENSG00000240771 | ARHGEF25 | CESC,CHOL,ESCA,HNSC,READ,STAD,TGCT,UCEC | | CESC,UCEC | ENSG00000253982 | ENSG00000255302 | EID1 | CESC,COAD,PAAD,READ,STAD,TGCT,THCA,UCEC | | CESC,UCEC | ENSG00000253982 | ENSG00000271601 | LIX1L | CESC,READ,STAD,TGCT,UCEC | | CESC,UCEC | ENSG00000253982 | ENSG00000113269 | RNF130 | CHOL,DLBC,GBM,HNSC,SARC | | CHOL | ENSG00000253982 | ENSG00000120885 | CLU | CHOL,DLBC,GBM,LIHC,PAAD | | CHOL | ENSG00000253982 | ENSG00000130312 | MRPL34 | CHOL,DLBC,HNSC,KIRC,KIRP,PAAD,THCA | | CHOL | ENSG00000253982 | ENSG00000154723 | ATP5PF | CHOL,ESCA,GBM,HNSC,THCA | | CHOL | ENSG00000253982 | ENSG00000159335 | PTMS | CHOL,DLBC,HNSC,LAML,PAAD,STAD,TGCT,THCA,THYM,UCS | | CHOL | ENSG00000253982 | ENSG00000167397 | VKORC1 | CHOL,DLBC,ESCA,GBM,LAML,OV,PAAD,READ,STAD,THCA | | CHOL | ENSG00000253982 | ENSG00000174684 | B4GAT1 | CHOL,PAAD,TGCT,THCA,THYM,UCEC,UVM | | UCEC | ENSG00000253982 | ENSG00000176209 | SMIM19 | CHOL,DLBC,GBM,HNSC,KICH,KIRC,KIRP,LGG,THCA,THYM | | CHOL | ENSG00000253982 | ENSG00000005243 | COPZ2 | COAD,DLBC,GBM,READ,SKCM,STAD,TGCT,UCEC | | UCEC | ENSG00000253982 | ENSG00000059915 | PSD | DLBC,PAAD,READ,TGCT,UCEC | | UCEC | ENSG00000253982 | ENSG00000142227 | EMP3 | DLBC,LAML,READ,TGCT,UCEC | | UCEC | ENSG00000253982 | ENSG00000249751 | ECSCR | DLBC,PAAD,TGCT,THCA,UCEC | | UCEC | ENSG00000253982 | ENSG00000183741 | CBX6 | LAML,PAAD,STAD,TGCT,UCEC | | UCEC | ENSG00000253982 | ENSG00000160408 | ST6GALNAC6 | PAAD,STAD,TGCT,THCA,UCEC,UVM | | UCEC | ENSG00000253982 | ENSG00000182534 | MXRA7 | PAAD,READ,STAD,TGCT,THCA,UCEC | | UCEC |
LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation | ENSG00000253982 | ENST00000518481 | DIAPH1 | ENSG00000131504 | ENST00000389054 | -0.1052 | 1 | CESC | - | ENSG00000253982 | ENST00000518481 | DIAPH1 | ENSG00000131504 | ENST00000253811 | -0.1052 | 1 | CESC | - | ENSG00000253982 | ENST00000518481 | DIAPH1 | ENSG00000131504 | ENST00000389057 | -0.1052 | 1 | CESC | - | ENSG00000253982 | ENST00000518481 | DIAPH1 | ENSG00000131504 | ENST00000398557 | -0.1052 | 1 | CESC | - | ENSG00000253982 | ENST00000518481 | DIAPH1 | ENSG00000131504 | ENST00000518047 | -0.1052 | 1 | CESC | - | ENSG00000253982 | ENST00000518822 | MFSD9 | ENSG00000135953 | ENST00000421966 | -0.1107 | 389 | UCEC | - | ENSG00000253982 | ENST00000517959 | MFSD9 | ENSG00000135953 | ENST00000428085 | -0.1298 | 1 | UCEC | - | ENSG00000253982 | ENST00000517959 | MFSD9 | ENSG00000135953 | ENST00000421966 | -0.1107 | 419 | UCEC | - | ENSG00000253982 | ENST00000518481 | MFSD9 | ENSG00000135953 | ENST00000428085 | -0.1021 | 84 | UCEC | - | ENSG00000253982 | ENST00000518481 | MFSD9 | ENSG00000135953 | ENST00000421966 | -0.1082 | 1 | UCEC | - | ENSG00000253982 | ENST00000518822 | GALNT7 | ENSG00000109586 | ENST00000503213 | -0.1382 | 70 | CHOL,UCEC | - | ENSG00000253982 | ENST00000517959 | GALNT7 | ENSG00000109586 | ENST00000503213 | -0.1382 | 100 | CHOL,UCEC | - | ENSG00000253982 | ENST00000518481 | GALNT7 | ENSG00000109586 | ENST00000503213 | -0.2015 | 97 | CHOL,UCEC | - |
lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | ENSG00000253982.1 | ENST00000518822.1 | 302 | 1399 | 491 | ENSG00000253982.1 | ENST00000517959.1 | 56 | 819 | 649 | ENSG00000253982.1 | ENST00000518481.1 | 56 | 849 | 679 |
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