 lncRNA targets the enhancer region and positively regulates the gene expression. |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | ELF1,RREB1,BACH1 | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
 |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000253948 | ENST00000521696 | exon_skip_111863 | chr14:23565815-23565892 | -14.80 | -0.2902 | AP1G2 | ENST00000308724,ENST00000397120 | Frame-shift | | ENSG00000253948 | ENST00000521696 | exon_skip_114365 | chr14:74290026-74290118 | -14.23 | -0.2223 | ABCD4 | ENST00000356924 | Frame-shift | | ENSG00000253948 | ENST00000521696 | exon_skip_370518 | chr22:50247691-50247776 | -12.92 | -0.1656 | HDAC10 | ENST00000216271 | Frame-shift | | ENSG00000253948 | ENST00000521696 | exon_skip_384420 | chr3:49812647-49812738 | -13.38 | -0.1715 | UBA7 | ENST00000333486 | Frame-shift | | ENSG00000253948 | ENST00000521696 | exon_skip_6419 | chr1:51756319-51756358 | -8.09 | -0.5056 | OSBPL9 | ENST00000428468 | In-frame | | ENSG00000253948 | ENST00000521696 | exon_skip_132355 | chr16:1786756-1786955 | -26.00 | -0.2407 | NUBP2 | ENST00000262302 | Frame-shift | | ENSG00000253948 | ENST00000521696 | exon_skip_324294 | chr2:27774423-27774530 | -10.78 | -0.1268 | MRPL33 | ENST00000296102 | Frame-shift | | ENSG00000253948 | ENST00000521696 | exon_skip_481821 | chr8:22067084-22067159 | -17.50 | -0.2536 | DMTN | ENST00000265800,ENST00000358242,ENST00000432128,ENST00000523266 | In-frame | | ENSG00000253948 | ENST00000521696 | exon_skip_16568 | chr1:201989382-201989531 | -16.26 | -0.1153 | RNPEP | ENST00000295640 | Frame-shift | | ENSG00000253948 | ENST00000521696 | exon_skip_319223 | chr19:43526200-43526349 | -19.05 | -0.2140 | ETHE1 | ENST00000292147 | Frame-shift | | ENSG00000253948 | ENST00000521696 | exon_skip_326885 | chr2:74490024-74490127 | -22.25 | -0.3007 | TTC31 | ENST00000233623 | Frame-shift | | ENSG00000253948 | ENST00000521696 | exon_skip_333962 | chr2:219247112-219247246 | -19.33 | -0.1498 | STK16 | ENST00000396738,ENST00000409638 | Frame-shift | | ENSG00000253948 | ENST00000521696 | exon_skip_335558 | chr2:240596680-240596942 | -25.41 | -0.1187 | CAPN10 | ENST00000391984 | Frame-shift | | ENSG00000253948 | ENST00000521696 | exon_skip_374375 | chr3:49675182-49675309 | -22.75 | -0.2106 | APEH | ENST00000296456 | Frame-shift | | ENSG00000253948 | ENST00000521696 | exon_skip_382458 | chr3:38131595-38131638 | -7.90 | -0.2394 | ACAA1 | ENST00000333167 | Frame-shift | | ENSG00000253948 | ENST00000521696 | exon_skip_442657 | chr5:74730259-74730398 | -11.98 | -0.1964 | GFM2 | ENST00000296805,ENST00000509430 | Frame-shift | | ENSG00000253948 | ENST00000521696 | exon_skip_446758 | chr5:178212972-178213103 | -14.45 | -0.1246 | PHYKPL | ENST00000308158 | Frame-shift | | ENSG00000253948 | ENST00000521696 | exon_skip_462144 | chr6:125298713-125298816 | -16.26 | -0.1730 | HDDC2 | ENST00000398153 | Frame-shift | | ENSG00000253948 | ENST00000521696 | exon_skip_494079 | chr8:144099080-144099205 | -28.38 | -0.2489 | SHARPIN | ENST00000398712 | Frame-shift | | ENSG00000253948 | ENST00000521696 | exon_skip_501752 | chr9:136992924-136992974 | -10.61 | -0.2947 | PAXX | ENST00000371620 | Frame-shift | | ENSG00000253948 | ENST00000521696 | exon_skip_123601 | chr15:74897010-74897219 | -20.67 | -0.1406 | MPI | ENST00000352410 | Frame-shift | | ENSG00000253948 | ENST00000521696 | exon_skip_140232 | chr16:634888-634956 | -11.77 | -0.1962 | METTL26 | ENST00000301686 | Frame-shift | | ENSG00000253948 | ENST00000521696 | exon_skip_67297 | chr11:614173-614399 | -23.94 | -0.1234 | IRF7 | ENST00000397574,ENST00000525445 | Frame-shift |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000253948.1 | ENST00000521696.1 | 86 | 40 | 300 |
|
