 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | FRMD4B,RPAP2,SPAG9,PMM2,MGAT4A,HELQ,CPLANE1,PUM1,XRN1,MYCBP2,ERI2,LARS1,SLC25A32,BICD2,CSNK1G3,MFSD8,SH3D19,ATL2,DYNC2I1,DNAJC27,NUP155,WDFY1,ANAPC1,WDR89,BRD1,RB1CC1,CILK1,SPATA13,ZRANB1,TRIQK,IPP,MZF1,PDE5A,TTC31,STX7,MAPK8IP3,CHM,DCP1A,SUGP2,RPS6KA3,VAMP4,DCLRE1C,FBXL4,TANK,SLF2,DMTF1,GNAQ,RFC1,TMEM184C,FAM193A,NSD3,RNF170,UNKL,PHF10,PIGG,MAK16,SENP1,LMBR1L,WWP1,GPCPD1,ZNF24,SLC38A2,NUP50,UBE4A,SNIP1,ZBED4,KMT2B,IRAK4,GSTCD,NBN,ENY2,VMP1,ZFP14,CENATAC,WDR5B,TP53INP1,ST7L,KAT6A,KLHL28,KDM5B,MSANTD2,TUBGCP6,CCDC14,NUP58,SMARCC2,RSF1,AFF4,MYO9A,LZTFL1,ARAP2,COG6,RNF38,THAP2,VIRMA,CLK4,LBR,ZUP1,USP30,FAM133B,ZBED5,INPP5B,IBTK,SETD2,TBK1,TTC14,KLHL42,KNTC1,RANBP6,SAMD12,PPP1R3D,NOD1,CREB1,MEX3C,SUDS3,SH3GLB1,SLC33A1,KDM5A,EXOC8,PPIP5K2,DPY19L4,CAPN7,ATR,ADAM10,STRN3,ARHGAP19,SIAH1,SMAD2,SCYL3,CLCN6,ECHDC2,OGT,ARIH1,IGIP,ZFP1,CPSF1,C20orf194,CLK2,NCBP1,MYEF2,RNF19A,RAPGEF6,ARID4B,ASH1L,CNST,POLG2,CLOCK,NFIA,PTAR1,TUT4,RBM15,PSIP1,FAN1,UBE3A,RIC8B,TOP2B,CPSF7,MOCS3,ZNFX1,BBIP1,MORC2,THOC2,CTC1,CLK1,ATXN7,ZBTB6,HS2ST1,GABPB1,RABL2A,GTF3C2,OFD1,IGF1R,VPS36,PEAK1,ACYP1,INTS6,FBXO38,RFX7,TMEM39A,MAP2K4,HCFC2,FOXJ3,BMI1,PURA,KDM7A,XPNPEP3,MBD5,MIER1,ANO8,RSRC2,TTC21B,SNX27,NPAT,ZNHIT6,NAPB,USP46,AP1G1,ANKRD11,RRM2B,RAF1,NBR1,RAB3GAP2,NAA25,UTP23,NEMP1,EML4,SETD5,ZFP62,MIS18BP1,GON4L,MDN1,TRAM1,SOCS4,CERS6,C9orf72,ZBED8,CHIC1,ORMDL1,CHD9,BRAF,ZNF45,HACD2,RALGAPA2,YTHDC1,TOPBP1,BAZ1A,BACH1,PIGN,SECISBP2L,ORC2,OSBPL3,NFKBIZ,PTPN14,SLC35F5,SBNO1,C1orf52,PHC3,CUL9,PRRC1,POGLUT1,PTPN13,CAMSAP1,TFCP2,YWHAZ,LRRC37B,DHX35,ZZEF1,SKIL,INTS2,SUPT20H,RSRC1,CCDC191,TAOK3,NXF1,DCUN1D2,UBXN2A,RNF111,HIF1AN,TNKS,ANKRD28,SLU7,FIGNL1,C6orf62,NR2C2,PAN2,SLFN13,FUT10,R3HDM1,PPP4R2,SLC25A16,SMARCAD1,GIGYF1,KHNYN,ZNF14,FAM193B,SCRN3,STAG2,FAM114A2,PLS1,PKN2,BRD2,LSM11,SLC30A6,TMCO6,GRK3,ARHGAP29,CDK17,STYX,METTL4,GLS,ATG2B,ZFC3H1,MBTD1,NFYB,N4BP2L1,ATXN2L,SP3,SEPSECS,ARHGEF7,AP4E1,MAN1A2,ANKRD13C,DDX42,WDR35,VCPKMT,HIPK1,TTC3,CEP192,ARHGEF11,EIF4A1,PIK3C2A,PAFAH1B1,DHX16,VPS13A,PALB2,EIF2AK2,ZNF69,DNAJC24,PGGT1B,STXBP5,ATF7IP,ZFP3,ITGB8,RCHY1,MARCHF6,SWT1,EIF4ENIF1,LONRF1,MOSPD2,LTN1,RSPH3,CD2AP,RNF214,ZNF30,AMMECR1L,TMEM168,IPO8,RAB28,PIK3R4,ATM,FAM172A,THADA,ADO,FLVCR1,LUZP1,EMC2,FANCL,ILF3,MED14,GLI4,TTC17,BRAP,CDK13,CAND1,DPY19L3,LENG8,PER2,SMURF2,KLF7,LCORL,PRR3,TRAF6,CSNK1G1,UBE2G2,CEP57,PAWR,MIB1,CEP68,HOOK3,FGD4,NEMP2,FEM1B,ARIH2,SPICE1,SLFN12,PPWD1,RC3H2,LNX2,RELCH,ARMCX4,RSBN1,VEZF1,MLLT6,PRPF40A,GSK3B,SASS6,SLC30A7,ATG12,PIBF1,ZNF70,CLASP1,AHI1,INO80D,SAMD8,NHLRC3,ICE2,AGK,SMCR8,ASTE1,RORA,BIVM,CRLF3,CNOT6L,PGAP1,ADGRA3,DDX55,KPNA1,SMG1,STK3,MAPK9,CASP2,KRIT1,IPMK,DCAF7,ZXDA,USP53,FAM111A,COG5,PARP11,GCFC2,THOC1,PROSER1,ANKMY1,WDR59,ZNF25,OTUD7B,UBA6,VPS50,ACAP2,TRNT1,UBR1,WAPL,NUMA1,PHF12,CHD8,EPN2,LANCL1,SESN3,TNKS2,KIAA1143,ZZZ3,DENND6A,RALGPS2,ODR4,ZMYM5,UGGT2,C2CD3,PPP3CB,UBR4,OXR1,TMED8,OSBPL8,PDCD6IP,SNRNP48,RC3H1,CBLB,XPO4,SETX,ZNF44,AP1AR,SLC12A6,TOP3A,TRIM13,ARHGEF38,UFL1,FGFR1OP2,PKD1,LYSMD3,RIMKLB,TAF8,LTO1,GRPEL2,KANSL2,PHC1,LRRFIP2,METAP1D,XIAP,SLC25A46,ATP7A,BEND7,BCLAF3,APBB2,DNAJB14,PPM1B,PUS7L,MCM9,IFT80,ALS2CL,CD47,PELI1,CEP83,ZCCHC14,GGNBP2,ATP11A,EP400,UACA,LIN54,UBN2,ERCC6L2,DDX6,KIAA0586,LRIG2,FBXO3,SEC23IP,ABHD18,SESTD1,RTTN,REV3L,WDR47,NRBP2,SMCHD1,SLX4,CREBRF,MECP2,AFDN,KLF3,IKBKB,NBPF11,ATP6V1C1,RPRD1B,DYNLT2,DTWD2,PRKD3,ACIN1,ZNF41,ZC3H8,DOCK7,LATS1,ARHGAP17,BPNT2,SART3,DGKE,TRAPPC6B,ATE1,ENOSF1,AKT3,DZIP3,RAB2B,USP6NL,ANKRD49,PAXBP1,MBLAC2,SLC38A9,APPL2,GANC,EPS15,CCDC125,MEX3A,FNTA,KCTD18,TADA2A,FNBP4,MAU2,MMS19,JADE2,KIAA1958,ZNF28,PITPNB,SYNRG,KMT2D,BOD1L1,PLEKHA8,RSRP1,RAB33B,TMF1,SSH2,EYA3,MLLT10,CHD2,RNF31,AHR,GOLGA4,MINDY3,USP40,MED23,GPR180,NVL,ATG14,GOLGB1,FOXP1,PWWP2A,SQLE,NBPF15,CHRAC1,MYNN,METTL14,TSNARE1,OTUD4,ANKLE2,TUBGCP3,AHNAK,ZNF720,SLC39A10,MIER3,UPF3B,LINS1,TMPO,QKI,BTBD7,ROCK2,ANKRD26,GSAP,SCAF11,STAT6,PUS10,ARHGAP39,C18orf32,GPBP1,C2orf68,WAC,CNOT7,GNRH1,ZSWIM8,ARHGAP32,MRE11,NOL4L,RBM6,EHMT1,TRMT13,GDAP2,RAD50,ZNF862,PDS5B,CDK19,TP53BP1,ZFHX3,EDEM3,SREK1IP1,ARHGAP12,ARID4A,PIGF,SBF2,NT5C2,LPP,RNF115,AGPS,ATP6V0A2,ARPP19,LRBA,VPS54,DCTN4,CCDC142,LYRM7,SMAD4,ELP1,AASDHPPT,PAXIP1,TTC37,VCPIP1,SYNE2,NOM1,CBX5,KIF3A,RYK,EPM2AIP1,SCAMP1,PPP3CA,SYNGAP1,CHD1,ZHX2,MAML1,WDR27,HECTD4,ZEB2,EXOC7,ANKFY1,KHDC4,GNPTAB,DIXDC1,PLXNB1,CERS5,TPR,TFDP2,PIGB,MIDEAS,NOC3L,HPS4,MCPH1,NBPF1,PNISR,SFPQ,CEPT1,USP45,UBE3B,CARD8,SLC35E3,DMXL2,ARHGAP42,PIK3CA,ATAD2B,ZNF10,SINHCAF,CTBP2,CUL4B,GOPC,LRRC14,EVI5,NCOA2,FBXO9,TBC1D15,FAM126B,OSGIN2,ATAT1,MED17,INVS,PREPL,PLCG1,ESCO1,PRKAB2,RALGAPA1,MTMR10,CEP120,PBX2,FGD6,TMX3,KLF12,B3GALNT2,ANGEL2,WDR11,MDM1,NAA15,NIPAL2,ROCK1,WASHC2C,CSPP1,SHANK2,KDM3B,N4BP2,MYSM1,FAM214A,MED13L,FCHO2,AKAP8,CEP57L1,METTL15,ARID2,SEC24B,STAM2,SMG6,TTC5,VPS13B,UIMC1,ELF1,RNF44,MALT1,TAF1D,KATNBL1,TAF4,PLEKHH1,CCDC174,NUP153,TTI1,DBR1,SPIN3,DDX52,TASP1,TBRG1,CHFR,COX11,TBP,GABPA,SLX4IP,HEATR1,ITSN1,SUGT1,GTF3C3,PPP1R12A,KLHDC1,AFTPH,ZMAT3,GATAD1,PBRM1,TET3,DHFR2,BNIP2,PDPK1,PRR14L,PPM1A,RNPC3,C14orf28,BARD1,ANKRD10,RPS6KB1,TENT4A,TRPS1,OBI1,PPP4R3B,CPNE3,PTK2,LRCH3,UBXN7,GABBR1,MTMR12,CNOT4,CHTOP,SON,DOP1A,BTBD19,KIAA2026,KANSL3,KMT2C,DHX57,MRPS30,STAU2,SIKE1,FBXO22,SCAF4,PHF8,DENND4A,RLIM,DDX60,MPHOSPH9,YTHDF3,CCNT2,SNX14,HECTD1,PTCD3,MAGI1,EEA1,UBE2W,PHTF2,NFRKB,ZNF91,CHD6,ZFP91,CTPS2,AGO2,BRWD1,CNOT1,DERL1,NIN,ARL13B,DDI2,RBMS3,BMPR1A,TRAPPC11,RBM26,NAPEPLD,PURB,SPATA6,RBM25,C1orf131,FBXW7,TBCK,RO60,BBS10,KLHL9,ZFP30,MLH3,SP4,SPRTN,RBM43,SETD6,KANSL1L,ARL5A,POLI,UBR5,LNPEP,PRPF39,ITSN2,RESF1,ETNK1,ZNF34,KIAA0753,ANKRD46,WDFY3,ATP8A1,ZFAND1,ENTPD4,SMC5,TMEM41B,VPS41,HEATR5B,ZNF106,PJA2,EPC1,LCOR,ZC3H13,PANK3,DDHD1,PABIR2,MAP4K5,SLC4A7,CMTR2,GORAB,UBR3,ATXN3,MAP3K7,FBXL20,CEP44,CENPC,RBM41,PROSER3,NOL9,HERC2,OTUD6B,ARGLU1,TDG,NEPRO,ABHD13,CIAO1,TUBGCP4,FBXW11,CCNL1,SRPK2,TLK1,USP28,SLC37A3,C10orf88,KRAS,ANKRA2,ASB7,SGSM2,C2orf49,POLK,PLEKHA3,VMAC,TGS1,SOGA1,NCOR1,CELF1,TMEM161B,PRKAA1,CDC40,EPG5,KRR1,RBM45,HSPBAP1,NFXL1,WRN,PRDM2,RBL1,NSMCE2,SPATA5,FAM149B1,R3HDM2,VEZT,QRICH1,PMS1,NSMAF,NFIB,ATAD2,USP12,RNFT1,DENND1B,ARHGEF2,ADAM17,VIPAS39,ADCY6,METTL6,ABI1,WDR36,AAK1,TIA1,ZNF83,PPP4R3A,MOSMO,BAG4,RPS6KC1,RMDN1,KANSL1,NSUN6,TMTC3,RFX3,ZNF8,TMEM245,ZMYM3,AMMECR1,DNMT3A,HAUS6,TBC1D8,PTPN2,SYNJ1,BMPR2,DPH1,TMEM68,VSIG10,ERCC3,CDS2,NEIL1,KDM2B,SZT2,SMARCD1,FAM13B,PRKDC,USP48,STX17,GIN1,PARP8,HELZ,C8orf37,CWF19L2,STK4,ARFGEF1,ELF2,MTMR9,CRAMP1,SPOPL,LUC7L,TMEM65,ZNF43,RAPGEF5,PTBP3,PTPRK,PNN,MICAL3,PDGFC,LUC7L2,BRD8,IRF2BP2,CCAR1,GAPVD1,SACM1L,TMCC1,CACUL1,UBE2V1,ARHGAP5,MROH1,CASP8,ARL5B,SNX13,PMS2,TMEM131,TRA2A,MTREX,MAPKAPK5,KMT2A,TPP2,REV1,SLC10A7,FZD6,BROX,PCBD2,NR2C1,MFAP3,AMY2B,C8orf76,FAM135A,DYNC1LI2,APPL1,SOS1,ETV3,RUFY2,JMY,RBM33,PAG1,HCFC1,RAD17,N4BP2L2,AVL9,NOL8,ZDHHC21,WDR37,LRCH4,AGAP6,GGA3,RBM19,RYBP,DSTYK,GABPB2,ZNF16,ATXN7L1,CPEB2,TRIM66,MAPKBP1,RBM39,ODF2L,KIF5B,C21orf91,TAF9B,GPATCH8,TNPO1,SLC25A27,PGS1,MSL2,STAG1,ZCCHC8,ERICH1,TBL1XR1,NRF1,FAM120B,ZNF2,GXYLT1,KAT7,BLOC1S6,WASHC4,ZXDC,INTS3,NSRP1,FNDC3A,PDS5A,PIGL,AZIN1,POLR1F,ZC3H7A,AASDH,CSAD,PHLDB1,BAZ2A,NDUFAF6,ATRX,MAP3K2,RPRD1A,GPATCH2,RBM28,MAML2,DCAF8,IKZF5,C2CD5,GRHL2,ABCA5,PHYKPL,SF3B1,POFUT2,NHLRC2,ANKIB1,FRA10AC1,ZBTB5,RUFY3,PTEN,BCLAF1,PIK3CB,OGA,MAP3K4,ZFP69,ZFYVE26,RASAL2,NUP42,PAN3,CEP350,MED28,RNF168,PIGM,KMT2E,CLASP2,CWC22,COPS5,DCAF16,ATP11B,NUMB,ACVR2B,SUPT7L,MORC3,ITPRIPL2,EXTL2,MINDY2,RICTOR,SNX16,CENPT,OSGEPL1,PEX1,CHORDC1,S100PBP,RBM4,RAB11FIP2,CALCOCO1,METTL25,DPP8,USP24,KAT6B,APAF1,SOS2,WDR55,TOGARAM1,FAM217B,FAM76B,POGZ,BRWD3,NUDCD1,RBMX,AKAP10,TRIM23,RBM4B,RNF217,EXOG,PCNT,N4BP1,YEATS2,RBM14,ADNP,ADAT2,TANC2,ESYT2,MAP3K12,ORC4,GABRE,MBD1,IKZF4,TEFM,JARID2,ARID1B,FUBP1,PIP4K2B,DCAF5,NF1,MTBP,PRIMPOL,ERC1,GID4,TCF20,SPIN4,ANKRD50,THAP9,TENT4B,TRIM33,RAB22A,WDR20,SCAPER,LRP6,EZH1,FTO,MRNIP,THAP6,KIDINS220,SS18L1,ELMOD3,DHX15,DCAF1,FBXW2,DDX17,KIF20B,C12orf66,ABL2,SENP7,AQR,DCAF13,MTRF1,UBTD2,FMR1,RAD52,RSBN1L,MACC1,CEP43,TSTD2,DHX33,DYRK1A,ASXL2,STRN,CTDSPL2,MARF1,TAF2,GNPDA2,INO80,CEP290,TPD52,TRIP11,NEK1,TRPM7,SMC6,CDAN1,TRAPPC8,RAD21,WSB1,SLC24A1,TRAK2,GPALPP1,MAP4K3,ERV3-1,MKLN1,WDR41,PHIP,VPS52,RSPRY1,DLG1,PGM2L1,USP21,DOCK9,ALS2,ELK4,KLC1,CNNM3,NSD2,TRIM52,NCBP3,LRRC58,PPP1R21,ASAP1,ANO6,USF3,CRYZL1,SLC22A5,FBXO11,ZC3HAV1L,CCDC93,DFFB,TTC13,MBD6,BBS9,CWC25,SNX1,STK36,MTX3,TM2D1,ZMAT1,TCEA1,GOLGA8B,GTF2A1,EIF3H,YOD1,UBAP2,MCM3AP,RASSF8,CSGALNACT2,HP1BP3,ALPK1,TUT7,ACP6,STRADA,VPS13C,LRATD2,ZFX,CBR4,RMND5A,CSNK2A1,NAF1,CBWD2,WASHC5,USO1,RAB2A,DIDO1,TEX10,GOLGA8A,APPBP2,TJP1,LMBRD2,CYP2R1,RABGAP1,FKTN,POC1B,ARNT,CNOT2,SETD4,ABCA1,ALG9,EIF3E,CREBBP,RBM48,PIKFYVE,AARSD1,DUSP28,PUM2,TYW5,RBM5,USP3,ULK2,DHX36,NKTR,CEP162,DST,TRIP12,RBMS1,HERPUD2,IKZF2,ZFP28,RAD18,MTF1,FARP2,C19orf71,ZNF17,IMPA1,SRCAP,DOT1L,CRBN,TTLL3,TUBE1,RNF169,CEP170,ZNF84,SCYL2,LDB1,BAZ2B,CCP110,PARP6,ARHGEF12,BICRAL,TUBD1,YAP1,WDR33,WDR26,MTMR11,HOOK1,UTP15,NRIP1,LONP2,ARMC1,NEDD1,TRA2B,PRPF40B,FRYL,PCMTD1,PIAS2,LRP5L,KATNIP,JMJD1C,LRRC6,TBC1D31,ASXL1,ARHGAP21,KIF13A,USP31,TSC1,NSUN3,TEP1,DENND11,SPG11,WASL,RPRD2,FBXO42,NOTCH2,LRRC40,MAN2C1,TAB3,USPL1,TTC33,TBC1D5,PRPF4B,INTS4,LIN7C,CCDC57,TRAPPC2,FUT11,TET2,KBTBD2,PIP5K1A,CFAP97,ATF2 | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| Only predicted by TDF | | RNF111,KIAA1147,E2F5,PARD3B,TRIM33,ARHGAP19,ATF7IP,PHF20L1,CCNT1,DOCK7,NOC3L,XPO1,MECP2,WAC,FRMD4B,BAZ2A,VPRBP,PTPN4,PGS1,STRN3,RASA1,DGCR8,LMBRD2,ZFYVE16,MTMR11,CASC4,ANKRD46,RANBP6,FAN1,EFHC1,STK3,PNN,POC1B,ABCA5,STX16,UTP20,RALGAPB,RNF219,ZSWIM6,KIAA0355,CASP8AP2,PDIK1L,GTF3C2,ZFP14,IST1,HAUS6,KLHL9,DIP2B,TTPAL,WDR55,EP300,CTTNBP2NL,DDX52,ZFR,ZFX,EBAG9,CYP2R1,PROSER1,PLEKHH2,KIAA1586,PRPF40B,IKZF5,SETD6,BMPR2,FUBP1,YLPM1,UBXN7,CDK17,HOOK1,ANKRD13C,NLK,MACC1,TET2,CCDC93,INTS3,KAT6A,SLC30A7,DSTYK,PTGR2,RPRD1A,PSIP1,LRCH1,CCNG2,ARID4B,HERC4,DCUN1D2,DHX33,ZFYVE26,MAPK8IP3,PRDM1,TMEM39A,ATP6V0A2,CCDC66,RASAL2,EVI5,MZF1,ERCC4,PLEKHA1,THOC1,SOS1,FAM208A,ASH1L,LRRC57,C2CD5,LRRC37B,TYW5,OTUD6B,STRADA,MFAP3,NEK1,HIPK1,UBTD2,PRKD3,CHFR,TLK2,RAF1,SPICE1,FBXO42,LINS1,ALG9,PLEKHH1,OTUD7B,KIAA0196,IFT81,DHX15,SLC38A9,GPATCH2L,FAM126B,ARAP2,CDK13,FAM111A,RUFY2,EIF2AK2,UBR1,TANC1,PPWD1,FMR1,CFLAR,TERF1,OSBPL8,SRPK2,TJP1,CARD8,GANC,QRICH1,ERCC3,UGGT2,GSE1,YTHDC2,RBMS3,PMS1,ERI2,ARGLU1,PDP1,FAM217B,APPL1,DCAF8,KIDINS220,POGLUT1,SPAG9,TNKS2,GK5,PCNT,ALG6,SEH1L,FAM102B,SOCS5,GGA3,ATAT1,MED13L,NFRKB,MYLIP,CBFA2T2,UBE2W,TTC3,XPO4,TOP2B,LTN1,REST,ITGB8,METTL14,DENND6A,METTL6,PUM2,NUDCD1,TUBGCP4,LMBR1L,ARL13B,FBXW2,CTC1,ZDHHC21,MPHOSPH8,MAPK8,FER,PIAS1,ICK,MAK16,HERC2,OXR1,NPEPPS,KLHDC1,ORMDL1,CHD9,SLC25A16,WDR48,GOLGB1,SLK,MBNL1,AVL9,DIEXF,ZNF14,PARP11,WIPF2,ZFP1,NAPEPLD,RBM19,MEX3A,KIAA1551,SESN3,FBXL20,ACVR2A,ITPRIPL2,USP12,AGO4,FAM133B,CAMSAP2,SLC4A7,RIMKLB,SEC23IP,ELMSAN1,USP9X,RRP7BP,AGO1,ZC3H11A,MFN1,ZMYM3,DBR1,PIGF,TRIO,PIK3R4,ADAT2,FAM122B,USF3,ZFAND1,COG6,IQCB1,LARS,PAXBP1,SEPSECS,ZFP2,XIAP,RFC1,MLLT10,MPHOSPH9,DDX46,PIGN,NSUN6,CD46,AGAP9,TLK1,ZFHX3,ZFP30,PHLDB1,ACCS,ENGASE,SETX,C2orf68,INTS4,WDR5B,RASSF8,BDP1,CSAD,PRRC2C,WSB1,CHD6,XPNPEP3,MRPL42,USP33,AKAP11,GSK3B,SNX1,ABHD13,ANGEL2,PCM1,PER2,VPS8,LIMD1,THAP6,ELF1,ARMC1,ICE2,WDR35,ING5,GTF2I,ZMYM4,ZBED6,C21orf91,CEP120,TULP4,CEPT1,ZNF85,CEP135,ARHGAP5,FNBP1L,AARSD1,DCAF16,FOXK1,PPP4R3B,PAN3,MICAL3,PCBD2,MDN1,C8orf76,C1orf131,MAP3K1,ARL5A,NFIA,USP34,SRFBP1,ZBTB6,MCM3AP,MDM4,COPS5,RIC1,SUPT20H,USP42,ERC1,RSF1,MSI2,N4BP2L1,TASP1,CCDC174,SEC24B,KDM5A,PAFAH1B1,RFX7,LZTFL1,MAN1A2,ZMAT1,WDR60,RNF115,FEM1B,NAA40,ORC4,ARHGEF10,RBM43,ANKRD50,TBC1D5,KLHL28,RAD52,PIK3CB,ALPK1,PPP2R2A,GORAB,CHRAC1,KIAA1468,IFT80,TOP3A,SMG1,CDK12,CERS6,LONP2,BPTF,FRS2,EPC1,FCHO2,ARFGEF1,SLC39A10,DDI2,SAMD12,DHX16,KLHL42,DDX17,TBP,PGAP1,KANSL1L,ATP8A1,MSL2,PTAR1,DCTN4,CTPS2,RCHY1,MOSPD2,ZNF720,NUMB,TAF2,COG5,ZNF83,BACH1,SH3D19,RABEP1,DYNC1LI2,PJA2,RSPRY1,PRPF3,NR2C2,DDX60,PIK3C3,RAPGEF5,DCLRE1C,C12orf66,ZC3H6,FAM179B,WRN,INO80D,LCORL,LUC7L,FBXO9,DOT1L,PCMTD1,YOD1,TUBGCP3,SIN3B,ZFC3H1,TMEM131,SF3B1,WDFY3,MALT1,FAM120B,SLC35F5,TOPBP1,YEATS2,PKD1,ZCCHC4,USP6NL,SMG6,ANKRD28,FBXO3,KIF5B,SGMS2,ZNF45,TRAPPC10,FAM117B,RAB28,EYA3,ABHD18,ANKRD26,ZCCHC6,NFX1,N4BP2,ZEB2,MAVS,GAPVD1,HELQ,ARFGEF2,WAPL,RALGAPA1,NEMP2,RAD17,BCLAF1,SOCS6,PTPRG,STYX,APC,LRRC40,MFSD8,JARID2,UBR5,STK36,CNOT6,CCNL1,WDR20,SPIN3,S100PBP,TRPM7,NUP155,AHNAK,RBMS2,TUBD1,FOXJ3,CPSF7,YIPF4,EXOC8,WDR43,SENP5,RLIM,SLX4,RBM6,FKTN,HECTD4,ZFP3,C6orf62,PHF14,ZMAT3,B3GALNT2,ZCCHC11,KIAA0556,CDAN1,PEAK1,TTC33,NSD1,KIAA1143,CSNK1G3,CHD7,FOXP1,ZYG11B,DCAF7,ATXN1L,GABPB1,GTF2H4,SMARCC2,ZNHIT6,LEMD3,NHLRC3,OSGEPL1,SETD2,IGF1R,STX7,FAM73A,VIPAS39,ADRBK2,SLC33A1,BRWD3,VPS13C,ORC2,MTMR12,SLC12A6,CCDC125,CBFB,CD47,BNIP2,ITCH,ZNF70,SKIL,PBX2,ACP6,UBAP2,ZNF30,MED12,RORA,CACUL1,NIPAL2,USP25,FBXO11,HSPBAP1,SPATA25,PLS1,ITSN2,YWHAZ,CBL,TIA1,RBM5,CEP290,FAM114A2,NCBP3,THOC2,KPNA5,GPCPD1,SACM1L,RAB21,MYNN,TRMT12,EXTL2,AFTPH,CWC25,PMS2,CRYZL1,ETV3,ZUFSP,C5orf51,RIF1,CELF1,ENOSF1,SMURF2,KRIT1,ARID2,NCOR1,FRA10AC1,ITSN1,PDE5A,TMCO6,NAA15,NOL4L,DOCK1,DPP8,NEK7,CCDC82,TCEA1,PTPN12,REV3L,RALGPS1,USP28,KIAA2026,PAPD5,KIAA0907,SRSF5,VAMP4,ARL5B,TRAF5,ZNF69,CUL4B,NUP160,MAU2,CLASP1,SETD4,C9orf72,RNF38,PUS10,BBIP1,CEP162,SIKE1,SUZ12,EZH1,NUMA1,TEP1,OSBPL3,GIT2,METTL8,DPH1,LDB1,PGM2L1,PDGFC,CSGALNACT2,TAF5,MAML2,MED13,NSMAF,TBRG1,SPRTN,MTRF1,UTRN,LMTK2,CHD8,NUPL2,ZZEF1,KMT2D,TFCP2,SUN1,RC3H1,TMX3,HECA,SPIN4,BRAP,KLHL20,C18orf25,ZNFX1,PRKAA1,POM121,RANBP2,MED28,NRIP1,FOXJ2,FAM175B,ARHGEF11,RBM4,SLC25A27,IPP,CNOT6L | | Exist in public source | | NA |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| Only predicted by TDF | | ATP6V1F,EIF3G,CHMP2A,COX6A1,ENO1,SSSCA1,CAPNS1,CLPP,UBXN1,UBE2M,PSMB6,SDHB,RBM42,CLTB,MRPL4,SLC25A39,GPX4,PARK7,STOML2,COX14,COX8A,DDT,ECI1,PSMB7,MPV17L2,UBL7,LAMTOR2,GUK1,LSM10,TSR3,NDUFA3,FIS1,PPP1CA | | Exist in public source | | NA |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | PSMB5,UBL7,MPG,HAGH,DDT,RNF181,GET3,NUDT22,LAMTOR2,PCYT2,CHID1,AURKAIP1,ANAPC11,MPDU1,TMEM53,CHMP2A,SLC25A39,EDF1,CLPP,SERF2,COX4I1,PSMD13,YIF1A,GPX4,ATP6V0D1,MRPS34,MICOS13,TSR3,ZNRD2,COX6B1,CAPNS1,UQCRC1,MYDGF,PSMC3,TMEM208,ISOC2,CHCHD5,COPE,RHOG,UBXN1,NDUFB10,PPP1CA,GAPDH,PARK7,GPX1,PSMC5,RBM42,BLVRB,HMOX2,GIPC1,RNH1,EIF3I,HSD17B10,TXN2,PPIB,PRDX5,EIF3G,GUK1,AP2S1,ECI1,STOML2,MRPL4,NDUFS3,TSPO,LMAN2,CFL1,PSMD8,RHOC,NDUFS8,NDUFS7,PSMC4,COX8A,PSMB7,FIS1,POLR2E,C19orf53,EIF3K,NDUFB7,PSMB6,FKBP2,NDUFB8,NDUFA3,NUBP2 | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000253106 | ENST00000518639 | exon_skip_382458 | chr3:38131595-38131638 | -8.23 | -0.3165 | ACAA1 | ENST00000333167 | Frame-shift |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types | | ENSG00000253106 | ENSG00000001167 | NFYA | ENSG00000133740 | E2F5 | 5 | CHOL,COAD,ESCA,PRAD,THCA | | ENSG00000253106 | ENSG00000001167 | NFYA | ENSG00000082898 | XPO1 | 5 | CHOL,COAD,KIRC,PRAD,THCA | | ENSG00000253106 | ENSG00000166432 | ZMAT1 | ENSG00000082898 | XPO1 | 5 | CHOL,KIRC,KIRP,PRAD,THCA | | ENSG00000253106 | ENSG00000166432 | ZMAT1 | ENSG00000100941 | PNN | 5 | CHOL,KIRC,KIRP,LGG,THCA | | ENSG00000253106 | ENSG00000166432 | ZMAT1 | ENSG00000124222 | STX16 | 5 | CHOL,KIRC,KIRP,LGG,THCA | | ENSG00000253106 | ENSG00000166432 | ZMAT1 | ENSG00000142065 | ZFP14 | 6 | CHOL,KIRC,KIRP,LUAD,PRAD,THCA | | ENSG00000253106 | ENSG00000001167 | NFYA | ENSG00000005889 | ZFX | 5 | CHOL,COAD,KIRC,PRAD,THCA | | ENSG00000253106 | ENSG00000001167 | NFYA | ENSG00000095574 | IKZF5 | 5 | CHOL,COAD,KIRC,PRAD,THCA | | ENSG00000253106 | ENSG00000001167 | NFYA | ENSG00000162613 | FUBP1 | 5 | CHOL,COAD,KIRC,PRAD,THCA | | ENSG00000253106 | ENSG00000166432 | ZMAT1 | ENSG00000162613 | FUBP1 | 5 | CHOL,KIRC,KIRP,PRAD,THCA | | ENSG00000253106 | ENSG00000166432 | ZMAT1 | ENSG00000168769 | TET2 | 6 | KIRC,KIRP,LGG,LUAD,PRAD,THCA | | ENSG00000253106 | ENSG00000166432 | ZMAT1 | ENSG00000125633 | CCDC93 | 5 | CHOL,KIRC,KIRP,LGG,THCA | | ENSG00000253106 | ENSG00000166432 | ZMAT1 | ENSG00000143624 | INTS3 | 5 | CHOL,KIRC,KIRP,LGG,THCA | | ENSG00000253106 | ENSG00000166432 | ZMAT1 | ENSG00000079134 | THOC1 | 6 | CHOL,KIRC,KIRP,LGG,LUAD,THCA | | ENSG00000253106 | ENSG00000001167 | NFYA | ENSG00000116539 | ASH1L | 5 | CHOL,COAD,KIRC,PRAD,THCA | | ENSG00000253106 | ENSG00000166432 | ZMAT1 | ENSG00000185158 | LRRC37B | 5 | CHOL,KIRC,KIRP,LGG,THCA | | ENSG00000253106 | ENSG00000166432 | ZMAT1 | ENSG00000266173 | STRADA | 5 | CHOL,KIRC,KIRP,LGG,THCA | | ENSG00000253106 | ENSG00000001167 | NFYA | ENSG00000264522 | OTUD7B | 5 | CHOL,COAD,ESCA,KIRC,THCA | | ENSG00000253106 | ENSG00000166432 | ZMAT1 | ENSG00000065883 | CDK13 | 5 | CHOL,KIRC,KIRP,LGG,THCA | | ENSG00000253106 | ENSG00000166432 | ZMAT1 | ENSG00000113593 | PPWD1 | 5 | CHOL,KIRC,KIRP,LGG,THCA | | ENSG00000253106 | ENSG00000166432 | ZMAT1 | ENSG00000134884 | ARGLU1 | 5 | CHOL,KIRC,KIRP,LGG,THCA | | ENSG00000253106 | ENSG00000166432 | ZMAT1 | ENSG00000132716 | DCAF8 | 5 | CHOL,KIRC,KIRP,LGG,THCA | | ENSG00000253106 | ENSG00000001167 | NFYA | ENSG00000084093 | REST | 5 | CHOL,COAD,KIRC,PRAD,THCA | | ENSG00000253106 | ENSG00000001167 | NFYA | ENSG00000055917 | PUM2 | 5 | CHOL,COAD,KIRC,PRAD,THCA | | ENSG00000253106 | ENSG00000166432 | ZMAT1 | ENSG00000139636 | LMBR1L | 5 | CHOL,KIRC,KIRP,LGG,THCA | | ENSG00000253106 | ENSG00000166432 | ZMAT1 | ENSG00000178971 | CTC1 | 5 | CHOL,KIRC,KIRP,LGG,THCA | | ENSG00000253106 | ENSG00000001167 | NFYA | ENSG00000134698 | AGO4 | 5 | CHOL,COAD,KIRC,PRAD,THCA | | ENSG00000253106 | ENSG00000166432 | ZMAT1 | ENSG00000134698 | AGO4 | 5 | KIRC,KIRP,LGG,LUAD,PRAD | | ENSG00000253106 | ENSG00000166432 | ZMAT1 | ENSG00000159086 | PAXBP1 | 5 | CHOL,KIRC,KIRP,LGG,THCA | | ENSG00000253106 | ENSG00000166432 | ZMAT1 | ENSG00000241058 | NSUN6 | 5 | KIRC,KIRP,LGG,LUAD,THCA | | ENSG00000253106 | ENSG00000001167 | NFYA | ENSG00000120784 | ZFP30 | 5 | CHOL,COAD,KIRC,PRAD,THCA | | ENSG00000253106 | ENSG00000166432 | ZMAT1 | ENSG00000167280 | ENGASE | 5 | CHOL,KIRC,KIRP,LGG,THCA | | ENSG00000253106 | ENSG00000166432 | ZMAT1 | ENSG00000109046 | WSB1 | 5 | CHOL,KIRC,KIRP,LGG,THCA | | ENSG00000253106 | ENSG00000166432 | ZMAT1 | ENSG00000174606 | ANGEL2 | 5 | CHOL,KIRC,KIRP,LGG,THCA | | ENSG00000253106 | ENSG00000001167 | NFYA | ENSG00000174796 | THAP6 | 5 | CHOL,COAD,KIRC,PRAD,THCA | | ENSG00000253106 | ENSG00000166432 | ZMAT1 | ENSG00000174796 | THAP6 | 7 | CHOL,KIRC,KIRP,LGG,LUAD,PRAD,THCA | | ENSG00000253106 | ENSG00000166432 | ZMAT1 | ENSG00000266967 | AARSD1 | 5 | CHOL,KIRC,KIRP,LGG,THCA | | ENSG00000253106 | ENSG00000001167 | NFYA | ENSG00000275052 | PPP4R3B | 5 | CHOL,COAD,ESCA,KIRC,THCA | | ENSG00000253106 | ENSG00000166432 | ZMAT1 | ENSG00000152520 | PAN3 | 5 | CHOL,KIRC,KIRP,LGG,THCA | | ENSG00000253106 | ENSG00000001167 | NFYA | ENSG00000186130 | ZBTB6 | 5 | CHOL,COAD,KIRC,PRAD,THCA | | ENSG00000253106 | ENSG00000001167 | NFYA | ENSG00000181827 | RFX7 | 5 | CHOL,COAD,KIRC,PRAD,THCA | | ENSG00000253106 | ENSG00000001167 | NFYA | ENSG00000171634 | BPTF | 5 | CHOL,COAD,KIRC,PRAD,THCA | | ENSG00000253106 | ENSG00000001167 | NFYA | ENSG00000100201 | DDX17 | 5 | CHOL,COAD,KIRC,PRAD,THCA | | ENSG00000253106 | ENSG00000166432 | ZMAT1 | ENSG00000100201 | DDX17 | 7 | CHOL,KIRC,KIRP,LGG,LUAD,PRAD,THCA | | ENSG00000253106 | ENSG00000166432 | ZMAT1 | ENSG00000112592 | TBP | 5 | CHOL,KIRC,KIRP,PRAD,THCA | | ENSG00000253106 | ENSG00000166432 | ZMAT1 | ENSG00000167766 | ZNF83 | 6 | CHOL,KIRC,KIRP,LGG,LUAD,THCA | | ENSG00000253106 | ENSG00000001167 | NFYA | ENSG00000156273 | BACH1 | 5 | CHOL,COAD,KIRC,PRAD,THCA | | ENSG00000253106 | ENSG00000166432 | ZMAT1 | ENSG00000117360 | PRPF3 | 5 | CHOL,KIRC,KIRP,LGG,THCA | | ENSG00000253106 | ENSG00000001167 | NFYA | ENSG00000177463 | NR2C2 | 5 | CHOL,COAD,KIRC,PRAD,THCA | | ENSG00000253106 | ENSG00000166432 | ZMAT1 | ENSG00000177463 | NR2C2 | 5 | KIRC,KIRP,LUAD,PRAD,THCA | | ENSG00000253106 | ENSG00000001167 | NFYA | ENSG00000178177 | LCORL | 5 | CHOL,COAD,KIRC,PRAD,THCA | | ENSG00000253106 | ENSG00000166432 | ZMAT1 | ENSG00000133858 | ZFC3H1 | 5 | CHOL,KIRC,KIRP,LGG,THCA | | ENSG00000253106 | ENSG00000001167 | NFYA | ENSG00000104517 | UBR5 | 5 | CHOL,COAD,KIRC,PRAD,THCA | | ENSG00000253106 | ENSG00000001167 | NFYA | ENSG00000113300 | CNOT6 | 5 | CHOL,COAD,KIRC,PRAD,THCA | | ENSG00000253106 | ENSG00000166432 | ZMAT1 | ENSG00000163660 | CCNL1 | 5 | CHOL,KIRC,KIRP,LGG,THCA | | ENSG00000253106 | ENSG00000166432 | ZMAT1 | ENSG00000204271 | SPIN3 | 5 | CHOL,KIRC,KIRP,LGG,THCA | | ENSG00000253106 | ENSG00000001167 | NFYA | ENSG00000119820 | YIPF4 | 5 | CHOL,COAD,ESCA,KIRC,THCA | | ENSG00000253106 | ENSG00000166432 | ZMAT1 | ENSG00000004534 | RBM6 | 7 | CHOL,KIRC,KIRP,LGG,LUAD,PRAD,THCA | | ENSG00000253106 | ENSG00000166432 | ZMAT1 | ENSG00000180787 | ZFP3 | 5 | CHOL,KIRP,LUAD,PRAD,THCA | | ENSG00000253106 | ENSG00000166432 | ZMAT1 | ENSG00000140326 | CDAN1 | 5 | CHOL,KIRC,KIRP,LGG,THCA | | ENSG00000253106 | ENSG00000166432 | ZMAT1 | ENSG00000128694 | OSGEPL1 | 5 | CHOL,KIRC,KIRP,LGG,THCA | | ENSG00000253106 | ENSG00000166432 | ZMAT1 | ENSG00000187792 | ZNF70 | 5 | KIRC,KIRP,LGG,LUAD,PRAD | | ENSG00000253106 | ENSG00000166432 | ZMAT1 | ENSG00000204304 | PBX2 | 5 | CHOL,KIRP,LGG,PRAD,THCA | | ENSG00000253106 | ENSG00000166432 | ZMAT1 | ENSG00000069667 | RORA | 5 | KIRC,KIRP,LUAD,PRAD,THCA | | ENSG00000253106 | ENSG00000166432 | ZMAT1 | ENSG00000116001 | TIA1 | 5 | CHOL,KIRC,KIRP,LGG,THCA | | ENSG00000253106 | ENSG00000166432 | ZMAT1 | ENSG00000003756 | RBM5 | 7 | CHOL,KIRC,KIRP,LGG,LUAD,PRAD,THCA | | ENSG00000253106 | ENSG00000166987 | MBD6 | ENSG00000003756 | RBM5 | 5 | CHOL,KIRP,LUSC,OV,PAAD | | ENSG00000253106 | ENSG00000166432 | ZMAT1 | ENSG00000198707 | CEP290 | 5 | CHOL,KIRC,KIRP,LGG,THCA | | ENSG00000253106 | ENSG00000001167 | NFYA | ENSG00000125676 | THOC2 | 5 | CHOL,COAD,KIRC,PRAD,THCA | | ENSG00000253106 | ENSG00000166432 | ZMAT1 | ENSG00000125676 | THOC2 | 5 | KIRC,KIRP,LUAD,PRAD,THCA | | ENSG00000253106 | ENSG00000001167 | NFYA | ENSG00000117036 | ETV3 | 5 | CHOL,COAD,KIRC,PRAD,THCA | | ENSG00000253106 | ENSG00000001167 | NFYA | ENSG00000149187 | CELF1 | 5 | CHOL,COAD,KIRC,PRAD,THCA | | ENSG00000253106 | ENSG00000001167 | NFYA | ENSG00000189079 | ARID2 | 5 | CHOL,COAD,KIRC,PRAD,THCA | | ENSG00000253106 | ENSG00000166432 | ZMAT1 | ENSG00000149231 | CCDC82 | 5 | CHOL,KIRC,KIRP,LGG,THCA | | ENSG00000253106 | ENSG00000166432 | ZMAT1 | ENSG00000129933 | MAU2 | 5 | CHOL,KIRC,KIRP,LGG,THCA | | ENSG00000253106 | ENSG00000166432 | ZMAT1 | ENSG00000214413 | BBIP1 | 5 | CHOL,KIRC,KIRP,LGG,THCA | | ENSG00000253106 | ENSG00000166432 | ZMAT1 | ENSG00000108799 | EZH1 | 5 | CHOL,KIRC,KIRP,LGG,THCA | | ENSG00000253106 | ENSG00000001167 | NFYA | ENSG00000135870 | RC3H1 | 5 | CHOL,COAD,KIRC,PRAD,THCA | | ENSG00000253106 | ENSG00000166432 | ZMAT1 | ENSG00000135870 | RC3H1 | 7 | CHOL,KIRC,KIRP,LGG,LUAD,PRAD,THCA | | ENSG00000253106 | ENSG00000001167 | NFYA | ENSG00000173933 | RBM4 | 5 | CHOL,COAD,KIRC,PRAD,THCA |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000253106.1 | ENST00000518639.1 | 98 | 401 | 105 |
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