 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | RPAP2,ARHGEF1,PMM2,VAMP1,BICD2,MFSD8,ATL2,RNF166,MZF1,UNK,TTC31,MAPK8IP3,SRP19,RHNO1,VAMP4,FKRP,FKBP7,SLF2,GNAQ,TMEM184C,HLTF,UTP18,PIGG,SENP1,GPATCH11,RNF6,METTL5,TULP3,WDR5B,ST7L,MSANTD2,FAM200A,CHKA,COG6,C9orf85,FAM133B,TERF2IP,UBE2N,IBTK,TBK1,RECQL4,TTC14,BRPF1,KNSTRN,RAB10,SH3GLB1,PPIP5K2,STX18,DNTTIP2,SRSF4,SPTY2D1,TAF9,SCML1,CBX3,COX19,NCBP1,PPIL4,AP3M2,SMC2,PSIP1,RIC8B,UBE3A,MORC2,THOC2,ZBTB6,GTF3C2,OFD1,CTTN,BCL10,SEPTIN10,ARHGAP11A,FCHSD1,TMEM243,MSH6,CC2D1B,PURA,CFAP298,CD164,MIS12,ANO8,INO80E,ZNHIT6,H2AZ1,NEMP1,EML4,MIS18BP1,PAIP1,LPAR2,C18orf21,RAB5A,SRPK1,FKBP15,C12orf73,DONSON,MBD4,NFKBIZ,CPOX,PHC3,CDK11A,BTF3L4,ZZEF1,DHX35,INTS2,SUPT20H,DCUN1D2,UBXN2A,EIF2B1,SLU7,PRELID3B,BUB3,RIOK1,SMARCAD1,GIGYF1,HMGN3,STX6,GTSE1,ZNF14,NOL3,SSX2IP,SEC31B,CDK17,ATG2B,CIR1,USP38,ARHGAP33,DMAC2L,ECD,AP4E1,TNPO2,DDX42,CASP6,DENR,TIFA,KDM1A,EIF4A1,CSNK2A2,MKRN2,LYSMD1,FAM204A,CCDC34,TMED2,GCA,RCHY1,SELENOI,SWT1,BRD3,CDCA3,RWDD4,ARHGEF9,ZNF30,AMMECR1L,TMEM168,SLC26A11,FANCL,BRAP,KLF7,CDC42SE1,KIF18A,C1orf159,WBP4,UBE2G2,MIB1,IP6K2,NEMP2,MLLT6,PRPF40A,GSK3B,FASTKD1,INO80D,ICE2,AGK,ENOPH1,BIVM,CRLF3,C20orf96,KPNA1,STK3,CIP2A,AP1G2,DNAJC21,RIOX2,ZNF25,CCDC59,TRNT1,AIMP1,FANCA,ARHGAP27,KIAA1143,DENND6A,RALGPS2,IFT74,MZT1,CBLB,XPO4,AP1AR,UFL1,PKD1,RIMKLB,PIDD1,METAP1D,SLC25A46,NSD1,PSMD14,GGCT,RFWD3,CEP83,DDX20,RFC4,XRCC4,LIN54,LRIG2,FBXO8,P4HTM,PARP2,PCED1A,SNAP23,MAPK15,IKBKB,SLC38A1,SART3,DGKE,ANKRD49,PAXBP1,LEMD2,H2BC21,KCTD18,PLEKHA8,EYA3,RTCA,ERO1B,GOLGA4,NVL,CRACR2B,ATG14,GOLGB1,PWWP2A,UCHL5,MOB4,MYNN,AK6,RPE,ANKLE2,SLC39A10,HDAC2,LINS1,ZFR,SNX5,PCSK4,LDAH,SCAF11,DDX11,TMEM167A,CNOT7,DIABLO,NDUFAF7,TXNDC9,ZNF862,PDS5B,SBF1,IDUA,EDEM3,ATP6V0A2,DCTN4,SNX6,UEVLD,CENPL,BTN2A2,KIF3A,TYW1,SCAMP1,TIMM23B,CCNA2,PRKAG1,MTRF1L,KHDC4,NCK1,PPP1R26,MPP3,PIK3CA,PSMD12,ATAD2B,PREPL,ESCO1,RASSF1,PBX2,ANGEL2,ATXN7L2,NAA15,POC5,RIT1,MYSM1,METTL15,DARS1,MSTO1,UIMC1,ELF1,TJAP1,C12orf29,UVRAG,RNF44,SMARCE1,RBBP8,TAF1D,MKS1,CEP95,SRP72,TTI1,DDX52,TASP1,IFT88,COX11,SUGT1,GTF3C3,TAF12,AFTPH,MYCBP,DMPK,FYTTD1,BARD1,RPS6KB1,PTK2,GABBR1,TFAP4,N6AMT1,KANSL3,EHBP1L1,DENND4A,MPHOSPH9,SP100,TMEM209,AGO2,ARL13B,RBM26,XRCC2,TCFL5,CAMK2G,CCNH,CEBPZOS,MLH3,STX1A,KANSL1L,PTS,ANKRD46,ATP8A1,ENTPD4,SMC5,HEATR5B,LCOR,PHF1,PABIR2,HDAC10,FBXL20,CENPC,HSF4,NOL9,HERC2,OTUD6B,NOXA1,TDG,ABHD13,TUBGCP4,RUBCN,C2orf49,POLK,MTHFD2,PLEKHA3,DCAF12,PSPC1,PRKAA1,ZSWIM4,MICALL2,PRDM2,WRN,RBL1,SPATA5,R3HDM2,BAZ1B,USP12,UCK2,PSMG4,ZGPAT,TMEM87A,METTL6,PBX4,TIA1,MOSMO,BAG4,SPCS3,ZNF8,CDK2,SLBP,ERCC3,FAM13B,DTX3,GRIPAP1,ZMYND19,E2F1,RNF215,NAT9,BRCA1,MTMR9,LUC7L,SPOPL,PCNA,RAPGEF5,PTBP3,WDR6,BRD8,SNX30,ERCC8,TMCC1,UBE2V1,GSPT1,ITGA6,USP16,MAPKAPK5,IARS1,BROX,AMY2B,RBM33,NOL8,ADAL,TMEM237,BUB1,WRAP73,FPGT,MPHOSPH10,TATDN3,SLC25A27,SCFD1,EXOC5,RFX5,ZNF2,GXYLT1,ICA1,LNPK,POLR1F,PPP5C,POLE3,KCTD6,SAMD10,MAP3K2,GPATCH2,RPRD1A,MUTYH,MFSD10,CSE1L,NHLRC2,CAAP1,RUFY3,CKAP2,LARP7,KMT2E,CWC22,DCAF16,PAQR3,MORC3,RALGDS,PEX1,CHORDC1,S100PBP,SUPT16H,TRIM23,DTWD1,PCNT,YEATS2,TAF1C,RBM14,RB1,TRAF3,TEFM,SURF6,TCEANC2,NF1,RNASEH2B,C2orf69,SPIN4,THAP9,THAP6,KIF14,MPV17,DHX15,YWHAG,GGPS1,KIF20B,KLHL12,AQR,CHFR,SENP7,MTRF1,STK24,TAF2,TRPM7,GTF2E1,MCM8,ACLY,TRAPPC8,FAM216A,WDR41,PHIP,ANO9,GTF2E2,TMED7,KLC1,FUNDC1,GPS2,LRRC58,DUS4L,PPP1R21,NOL12,RBM18,CCDC93,DLAT,MBD6,SNX1,PATL1,TM2D1,TCEA1,EIF3H,ATAD1,HP1BP3,ACP6,VPS13C,TAPT1,CBR4,NKRF,USO1,DIDO1,FKTN,ALG9,CEP41,EIF3E,CARD19,DUSP28,PUM2,MARCHF5,AXIN1,DHX36,ZCCHC7,TTC9C,IMPA1,TTLL3,COPS8,NEDD1,TFB1M,ARMC1,LRP5L,KATNIP,SH3GLB2,SPG11,FBXO42,PDCD7,NCAPD3,MRPL38,ANKRD13D,INTS4,SIRT7,PIP5K1A,MAPK1,STK38,KRCC1,B3GNTL1,PUM1,NUP155,TXNL4B,CENPK,RB1CC1,FASTKD3,ZRANB1,DYNC2LI1,CMC2,CAPZA1,CNOT9,DCP1A,BCS1L,TANK,DMTF1,MKNK1,ZDHHC23,RFC1,FAM193A,NSD3,DCK,MAK16,LMBR1L,MORF4L2,HSDL1,CDCA5,VPS39,STAT2,ENY2,VMP1,GMFB,CENATAC,SAFB2,SNAPC1,APTX,OSER1,LZTFL1,STRBP,RNF38,POLR2K,LBR,PARG,KPNB1,ZBED5,PNO1,HBS1L,INPP5B,SETD2,TRIP10,SIN3A,MEX3C,CREB1,SLC2A11,SUDS3,KYAT3,ADSS2,SPG7,STK39,DPY19L4,CAPN7,ADAM10,USP49,SMAD2,PPIP5K1,IGIP,POLD1,CLK2,MYEF2,RNF19A,RAPGEF6,ASH1L,POLG2,PTAR1,CEP152,CPSF7,TRIM37,CTC1,GABPB1,NASP,VPS36,FAM214B,ACYP1,INTS6,FBXO38,TBCCD1,IFT172,SLC4A1AP,SKP2,RSRC2,SNX27,NAPB,ZWINT,C3orf62,EIF2A,NAA25,RHPN2,PRMT9,SLC35A3,GTDC1,C9orf72,ZBED8,CHD9,TOPBP1,LMAN1,AGER,AGO3,PRPF38A,UBE2E1,SBNO1,C1orf52,POGLUT1,MRPL32,TYW3,ABHD16A,NXF1,TRIP13,UQCC1,C6orf62,PAN2,C2orf76,SLFN13,MKI67,STAG2,PKN2,CHEK1,THEM4,SLC30A6,SNX4,METTL4,DCLRE1A,MTMR4,KLHL17,ATXN2L,DNASE1,SDE2,HDAC8,ANKRD13C,TTC3,CCDC24,ORC6,GOLGA2,TDRP,EAPP,STXBP5,ATF7IP,KIF12,THOC7,SHOC2,METTL18,CD2AP,RSL24D1,SKA2,RAB28,FLVCR1,PDCD10,DENND5A,COPB1,DPY19L3,SMG7,MED7,SH2B1,DCLRE1B,LCORL,CSNK1G1,CEP57,METAP1,ARIH2,SPICE1,LNX2,ARMCX4,HAUS2,TRMT6,BZW1,SAMD8,SPATA5L1,C9orf78,EIF4G2,DDX55,PGRMC2,GLMN,METTL21A,WDR59,UBA6,ACAP2,TNK2,LANCL1,ODR4,PPP3CB,NDC1,UNG,AP5M1,NUDT3,OPA1,ARL6IP1,BORA,TMEM138,DENND11,LYSMD3,LTO1,TRAF1,ATP7A,ASCC1,ALS2CL,HMGB1,EP400,UACA,ANKDD1A,EXD3,DDX6,NFKBID,C17orf75,CDH24,SESTD1,NRBP2,SLX4,PHF13,MECP2,NBPF11,UBAP2L,DYNLT2,SEC31A,QRSL1,ACIN1,THAP1,STRAP,USP6NL,DNAJC19,GOLT1B,CEP85,ZNF28,CCHCR1,INPP5E,PITPNB,BOD1L1,PHF11,RAB33B,CHD2,MINDY3,CIAO2A,NBPF15,CHRAC1,METTL14,OTUD4,HEMK1,UPF3B,TMPO,IFT20,HAUS1,FRS3,PSMG2,GDAP2,RAD50,PISD,CCDC82,LPP,LRBA,ELP1,NOM1,ANP32E,UCKL1,SYNGAP1,CHD1,NAP1L4,FANCC,FBXO30,HECTD4,GTPBP8,YY1AP1,HARS2,EP400P1,HPS4,USP45,UBE3B,CARD8,SINHCAF,GOPC,EVI5,CENPU,LRIF1,MED17,STMN1,DNMT1,EIF3J,PLCG1,RCBTB1,NCAPG,RALGAPA1,TMX3,UBE2B,BICRA,MDM1,CHTF18,MED13L,FCHO2,FBXO41,ASPM,CCDC174,CDK5RAP1,SPIN3,TBRG1,RUNX1,NPRL2,SUV39H2,PPP1R12A,MIS18A,KLHDC1,FBXO46,RNPC3,C14orf28,MNT,CCDC77,BTBD19,KIAA2026,CCSAP,SIKE1,STAU2,FBXO22,SCAF4,NOL6,YTHDF3,CCNT2,SNX14,ORC3,NRAS,CENPQ,SAV1,NEK2,ZFP91,ZNF91,TMCO4,TRAPPC11,ATG16L1,ATP13A3,TUBGCP5,RBM25,C1orf131,JOSD1,KLHL9,NLN,UBR5,RESF1,ETNK1,SERTAD2,ERMARD,DTL,E2F6,EPC1,RNF114,ZNF22,TMEM69,ZNF717,SLC15A4,HEATR6,ATXN3,MAP3K7,TGIF2,ARGLU1,YJEFN3,NEPRO,LIG4,POLQ,SRPK2,IRF2,SGSM2,CCDC90B,VMAC,TGS1,KRI1,TMEM161B,KRR1,FAM149B1,CENPS,LBHD1,NSMAF,ATAD2,DENND1B,ADAM17,HOOK2,PPP4R3A,RFX3,UBA3,TMEM245,BTG3,TMEM68,VSIG10,CAD,C3orf38,USP48,SRGAP2,ZCCHC10,PARP8,HELZ,NDUFA5,ELF2,TMEM65,ZNF43,CWF19L1,COA5,CDC14B,CACUL1,ARL5B,SAR1A,TPP2,NR2C1,BRD9,ADAT1,RCC2,SOS1,PARP16,JMY,CISD2,AVL9,MED1,ZDHHC21,WDR37,MOK,SEC22C,SRRT,ATG5,AP3M1,TRIM66,KIF5B,TNFAIP2,TNPO1,MSL2,POT1,STAG1,TMEM267,ZCCHC8,ITFG2,RNF4,RRNAD1,KAT7,WDR91,GNA13,KAT8,AASDH,GBA2,RABGAP1L,KIAA0895L,LRRC37A3,NDUFAF6,ATAD3B,YARS2,PHYKPL,SF3B1,POFUT2,ANKIB1,PRKRA,ZFP69,BIRC5,PTGES3,ATP11B,GOLGA1,MINDY2,CDCA4,CENPT,MTPN,USP24,POGZ,CCDC43,TFB2M,ARRDC2,BRWD3,FBXO45,AKAP10,NUDCD1,RBMX,RBM4B,C21orf58,ADAT2,WDSUB1,MAP3K12,ORC4,FUBP1,MTBP,NMD3,CAPN15,CNKSR1,SMPD4,TRIM33,HMGB2,KIDINS220,DCAF1,DDX17,C12orf66,MAP3K13,HAUS5,UBTD2,ZNF57,FMR1,HDAC7,DHX33,CTDSPL2,TMEM165,GNPDA2,SDR39U1,LIN52,SMC6,GPALPP1,RHEB,C16orf87,UBFD1,PCYOX1L,DLG1,ABCC5,E2F4,CRYZL1,STK36,GOLGA8B,ABHD3,SS18,ALPK1,CBWD2,GOLGA8A,RABGAP1,PAM16,GNAI3,TGIF1,SETD4,CPSF3,TP53BP2,TSNAX,ASNS,CCNI,TYW5,SEPTIN7,USP3,CEP162,TRIP12,ZFP28,RAD18,ZNF17,SRCAP,CRBN,POLD3,MARS1,ZNF84,CCP110,BICRAL,CACNB3,C19orf18,KIF15,WDR26,HOOK1,ZDHHC6,PRPF40B,PCMTD1,JMJD1C,ARHGAP21,NGLY1,NAE1,VPS37A,LZTR1,KBTBD2,TRMT10A,ATF2,MRFAP1L1,CDK2AP1,DLGAP5,PPA1,GSDMB,SEC22B,PEX2,COPS2,HELQ,CPLANE1,TOMM20,ERI2,LARS1,SLC25A32,OXNAD1,CSNK1G3,TMEM234,GTPBP4,NBPF9,BRD1,SPATA13,TRIQK,FAM24B,PPID,SUGP2,HSPA14,PHF10,RAB6A,ING1,NUP50,ZBED4,WDCP,PLRG1,SLC25A40,ZFP14,NPEPL1,TMC8,TUBGCP6,CCDC14,ACAD8,STRADB,EIF2B5,XXYLT1,RABGGTB,ACTR6,UBA2,KLHL42,KNTC1,RANBP6,CEP72,SMIM15,GKAP1,TRIM59,TAZ,SLC33A1,EXOC8,ATR,NIPA1,STRN3,HSPA13,OGT,RCCD1,CCNB1IP1,GZF1,BLZF1,FBXO5,CLOCK,DHX34,TUT4,RBM15,CHKB,ANAPC10,MBD2,BBIP1,TRIM11,OSGEP,CLK1,ATXN7,MRRF,PRC1,WASHC3,MCMBP,RFX7,IQGAP3,VTI1A,RAF1,RDH14,LPCAT4,ZADH2,GON4L,CDC27,RACGAP1,CHIC1,ORMDL1,ZNF45,YTHDC1,COQ7,DDX51,BRIX1,PPP6C,TFCP2,GTF2H1,PASK,MTMR2,ATG4B,CCDC191,TAF5L,TNKS,NR2C2,FAM229A,PPP4R2,CDKN2D,TAF1A,BICD1,RMI1,NOP2,SCRN3,ABCA7,TMCO6,STAM,NCAPG2,PBK,PIK3C2B,TMEM126B,GLS,MBTD1,SEPSECS,MAN1A2,MANEA,GAS8,RAB3IP,CEP192,SCNN1D,BFAR,VPS13A,HSPH1,BUD13,ECPAS,ERCC5,ZFP3,JKAMP,LONRF1,RNF214,KBTBD6,SNX25,SDHD,MAPK1IP1L,RARS2,DPM1,FAM172A,CEP20,ILF3,GFPT1,CAND1,LENG8,SMURF2,FBXL3,PPP1R12C,PRR3,H3-3B,INPPL1,PPOX,FAM168B,WDR53,PIF1,PPWD1,RC3H2,SLC30A7,SASS6,CLASP1,NHLRC3,SH3YL1,TRIM65,ASTE1,TIMM44,MNS1,CASP2,CAPN10,KRIT1,IPMK,COG5,MICA,FAM136A,PROSER1,VPS50,WAPL,MTA2,SHLD2,ZZZ3,UGGT2,ZMYM5,REXO1,C2CD3,TAMM41,GDPD3,PDCD6IP,PCID2,SETX,CDK20,TRIM13,ARHGEF38,FGFR1OP2,GRPEL2,PHC1,LRRFIP2,PABIR1,CWC15,SSRP1,PUS7L,MED6,SLC25A24,PPA2,DCTD,CD47,GGNBP2,ERCC6L2,RTF1,CABLES2,RASEF,FBXO3,ZBTB2,NEMF,RTTN,IWS1,AFDN,AGTPBP1,CEP70,NDC80,ENOSF1,MAU2,DZIP3,GANC,LY75,CASP4,COA1,FNBP4,MMS19,TMF1,SSH2,NEK8,NAP1L1,MLLT10,MED23,UNC50,CLEC2D,BAG5,MTIF2,SUMO2,BCAS2,KIFC2,TSNARE1,NSUN2,ZNF720,STIL,MIER3,CDCA8,NCKAP1,BTBD7,PAFAH1B2,SBNO2,CLHC1,NDUFAF5,GPBP1,ARHGAP32,AP4M1,MFF,LSG1,ANLN,DRAM2,TTBK2,ZFAND6,ARID4A,RNF115,SYF2,AASDHPPT,ACP1,TTC37,VCPIP1,NSL1,PPP3CA,WDR27,FAM104A,EME2,BBS7,BSDC1,PLXNB1,TFDP2,SLC25A19,PNISR,GEN1,SFPQ,ACAP3,DNAJC9,ZNF10,FBXO9,ABCB10,TAF11,RNF149,CEP120,TRMU,OSBPL9,TACC3,PKP4,ROCK1,ZNF598,CSPP1,INTS12,FAM214A,N4BP2,ARID2,STAM2,MALT1,C1orf35,PLEKHH1,PICALM,YEATS4,DBR1,CCDC6,NFKB1,ZCWPW1,HEATR1,SLAIN2,WDR3,KLHDC4,CCNL2,RUNDC1,CDC45,POLE2,ANKRD10,TENT4A,OBI1,NECAP1,USP10,NUSAP1,CHTOP,TATDN1,LSM5,DDTL,CCDC50,KYAT1,COX18,OSBPL7,KAT2A,UBE2W,PHTF2,CHD6,U2AF2,ANKS6,CLDND1,DFFA,PLA2G6,CSNK1E,RNPS1,C5orf22,PDCD2,FBXW7,SPRTN,MRPL50,AGFG1,LIN9,PGAP2,CCT2,PRPF39,ITSN2,ZFAND1,TRIM45,SRRM2,BTN2A1,MIB2,UTP3,SLC4A7,CMTR2,GORAB,CNOT11,CEP44,PROSER3,ANKS3,GMCL1,C10orf88,KPNA3,KRAS,ANKRA2,TFAM,CELF1,EPG5,CRYGS,PMS1,QRICH1,RPS6,FAM160A2,ZNF83,C5orf34,COPB2,SZT2,EIF5B,ABHD10,PRKDC,GIN1,FASTKD2,STK4,NTAQ1,CRAMP1,NUDCD2,ARL6IP6,CASP3,XRN2,CCAR1,SACM1L,CHAF1A,CENPJ,DPH7,AREL1,MTREX,NSMCE4A,POLR3F,SLC10A7,EAF1,HINFP,XPA,PCBD2,NANP,GTF2H3,APBB3,STX2,DYNC1LI2,ANAPC16,RUFY2,WBP1,CDYL,TEPSIN,RAD17,TRIT1,TONSL,PDCL,LRCH4,NUP133,AGAP6,BET1,RYBP,ZNF16,PSMD6,MOB1A,ADAMTS10,GTPBP2,RBM39,INTS14,GPATCH8,PGS1,MDC1,TMEM44,CKAP5,BLOC1S6,INTS3,TRIM39,PDS5A,AZIN1,NEK3,ATRX,NOL10,RBM28,IKZF5,C2CD5,TMEM259,EME1,CACTIN,FRA10AC1,ZBTB5,BCLAF1,PIK3CB,OGA,PYCR2,NUP42,IFT27,PAN3,MED28,RNF168,NUMBL,ARHGAP4,DDX59,COPS5,SHTN1,TTK,ING2,OLA1,METTL25,DPP8,MTG1,PAK1IP1,WDR55,TOGARAM1,FAM76B,LRRFIP1,GTPBP3,SLC35F2,VPS29,ADNP,ESYT2,MBD1,ARID1B,ARRDC3,PRDM4,TCF20,SPTLC2,MRNIP,POLR2B,STK17A,FBH1,ABL2,ING4,INTS13,MED15,RSBN1L,RAD52,CEP43,URB1,DYRK1A,STRN,MARF1,INO80,CEP290,PGGHG,RAD21,FBXL6,COIL,WSB1,RSPRY1,USP21,ALS2,NSD2,RAP1GDS1,TRIM52,NCBP3,ATL3,WDR45B,TTC13,MICAL1,CUL4A,MTX3,YOD1,MCM3AP,TUT7,RPS24,STRADA,CSNK2A1,NAF1,RANBP9,TOP2A,TPRKB,PSMC3IP,CHML,GMEB2,C19orf71,TRMT61B,DOT1L,SDAD1,LDB1,TUBD1,UTP15,CDCA7L,FRYL,TBC1D31,USP31,NSUN3,TEP1,MACROH2A1,MAN2C1,DXO,SUCLA2,TBC1D5,WHAMM,LIN7C,CCDC57,TET2,RABL2B,CFAP97,ADH5,SPAG9,GART,SKA3,RNF141,XRN1,TTF2,GLYR1,AP3B1,BRD7,ANAPC1,WDR89,STX7,CCDC88A,RPS6KA3,N4BP2L2,TXNDC16,OXSM,DCLRE1C,FBXL4,L3HYPDH,RNF34,CACYBP,UNKL,WWP1,GPCPD1,ZNF24,ZFAND5,BCCIP,PIGW,ULK3,PIGX,KMT2B,SERTAD3,IRAK4,NBN,RHOT1,PUM3,TP53INP1,KLHL28,KCTD13,KDM5B,RSF1,NUP58,ABITRAM,VIRMA,PIAS3,CLK4,C6orf136,ZUP1,UBE2T,ATXN7L3,HMGXB3,KDM5A,FBXO34,ARHGAP19,SIAH1,MLKL,TRIP4,ARIH1,CARNMT1,PPTC7,ARID4B,FANCD2,LYPLAL1,FEM1C,METTL17,FAN1,TOP2B,RPAP3,FANCE,UBLCP1,RABL2A,TMEM41A,MOV10,RBBP4,SLC25A29,ADAM8,TMEM39A,FOXJ3,BMI1,KDM7A,DERL2,CBX1,MIER1,TTC21B,CAMKMT,NPAT,FANCF,AP1G1,ANKRD11,C4orf46,RAB3GAP2,UTP23,NIP7,USP35,SETD5,ZFP62,SOCS4,BRAF,BAZ1A,NKAPD1,OSBPL3,SPOUT1,GUF1,SLC35F5,SRSF2,PRRC1,CAMSAP1,TSEN54,YWHAZ,DHX29,SKIL,RSRC1,NT5C3A,LMNTD2,KIF23,ANKRD28,FIGNL1,R3HDM1,NT5DC3,FAM193B,BRD2,PNKP,LSM11,COG7,CDCA7,ZFC3H1,MIOS,CLCN3,NFYB,CENPE,SP3,DCUN1D5,ARHGEF7,VCPKMT,HIPK1,PIK3C2A,MRPS25,DHX16,SEPHS1,SVIP,POLM,PALB2,EIF2AK2,ZNF69,ABCE1,MPZL3,TSR1,SLF1,MAX,MARCHF6,EIF4ENIF1,CUL3,LTN1,IST1,RTRAF,ATM,ADO,STAMBPL1,SNX19,EMC2,MED14,NUP54,GLI4,IQGAP1,CDK13,NOA1,TRAF6,FEM1B,PAPSS1,DBF4,RELCH,RSBN1,ATG12,PIBF1,AHI1,LAMTOR3,CNOT6L,MOB1B,MIX23,FAM111A,USP53,GCFC2,ANKMY1,ASF1A,UBR1,PHF12,INTS11,EZH2,SNRNP48,RC3H1,ERP44,ZNF44,SLC12A6,SMG1,TAF7,KANSL2,BCLAF3,TMEM43,CHUK,DNAJB14,PPM1B,IFT80,PHTF1,ABRAXAS1,PELI1,ZGRF1,CDK5RAP2,UBN2,KIAA0586,YRDC,TSN,ABHD18,SLC5A3,SMCHD1,CREBRF,SMYD4,MTA3,TARS3,PRKD3,ZNF41,ZC3H8,GNL2,TRAPPC6B,ATE1,WDR82,RAB2B,KNOP1,SLC38A9,PGBD1,EPS15,FNTA,TADA2A,TGDS,KIAA1958,LRRC56,WDR76,CYB5R4,COP1,CETN3,USP40,G2E3,TRAPPC13,GPR180,TSG101,ZSWIM1,LTB4R,TUBGCP3,CBLL1,ANKRD26,PSMD5,GSAP,GGA2,BTBD10,C2orf68,WAC,MRE11,NOL4L,RBM6,TRMT13,ARHGAP12,NT5C2,ARPP19,VPS54,LYRM7,CCDC142,SPC25,PAXIP1,SYNE2,CBX5,RYK,EPM2AIP1,NAA35,PGM3,TPM4,PSME3IP1,MAML1,GTF3C4,SMYD3,UBXN11,PHF5A,CROCC,TPR,RSAD1,NOC3L,RIPK2,PCGF6,CEPT1,DDX23,MCM4,NCBP2,SRSF7,TBC1D15,ATAT1,IFFO1,EPRS1,ALG2,CEP63,XRCC5,CTBP1,GRSF1,WDR11,POMT1,PARPBP,EXOC2,KDM3B,ADPGK,YTHDF1,AKAP8,CEP57L1,SEC24B,VPS13B,WDR12,KATNBL1,TAF4,WARS2,TBP,GABPA,SLX4IP,DPY19L1,RNF145,GATAD1,TET3,TTC19,BNIP2,PPM1A,CLK3,INCA1,ATMIN,UBXN7,LRCH3,CNOT4,SON,MSL3,DHX57,MC1R,TYK2,C1orf174,RLIM,ZMIZ1,TDP1,PTCD3,NDE1,NFRKB,BRWD1,NIN,DDI2,CSTF3,C12orf65,ENTR1,RO60,TBCK,ACBD3,RHPN1,SEPTIN2,BBS10,SP4,RBM43,CLDN15,SETD6,TMTC4,ARL5A,LNPEP,CDC23,HDHD2,KIAA0753,COMMD10,TMEM41B,LTV1,DDHD1,MAP4K5,TMEM128,RBM41,CWC27,CIAO1,POLR2D,CCNL1,TLK1,USP28,TMEM263,ASB7,SUMO1,UBE2G1,ZDHHC20,MEAF6,RBM45,NFXL1,YAE1,GPR176,EGFL8,NR2C2AP,RNFT1,GEMIN2,DDX31,DCUN1D1,ABI1,NUP98,SPOP,WDR36,TMUB2,RMDN1,KANSL1,ZNF3,ABCD4,HAUS6,TBC1D8,PTPN2,COQ2,DGKQ,NEIL1,KDM2B,FAM161A,POLE,C12orf4,DDX5,G3BP2,STX17,PPP2R5E,LIPT1,CWF19L2,LYST,PNN,DSN1,LUC7L2,GAPVD1,ARHGAP5,DGKD,KATNA1,BBS4,CASP8,CBX8,SNX13,TRA2A,TEC,KMT2A,REV1,NEURL4,KDM1B,RAB5B,ETV3,NADSYN1,IMMP1L,CFAP44,LYPLA1,CEBPZ,RBM19,HACE1,GABPB2,METAP2,PIGA,TMEM167B,ODF2L,C21orf91,TAF9B,SLC26A6,TBL1XR1,NRF1,WASHC4,ZXDC,NSRP1,SPTLC1,PIGL,ZC3H7A,USP39,ARV1,BAZ2A,ZNF77,BRIP1,GEMIN5,DCAF8,HJURP,PAK2,MAP3K4,CEP350,CXorf38,CLASP2,SS18L2,SUPT7L,PSME4,QSOX2,EXTL2,RICTOR,SNX16,ARL6,OSGEPL1,CYTH1,RBM4,RAB11FIP2,IVNS1ABP,URI1,ANAPC7,EXOG,PUS3,ANAPC2,KCTD9,NCOA5,GABRE,SCAI,MYO19,TRAPPC14,ANKRD40,LSM12,PRIMPOL,WDHD1,UBQLN1,RAB22A,WDR20,EZH1,ELMOD3,FBXW2,GSTM2,PRPF4,SLC7A6,DYNC2I1,DCAF13,DNAJC7,MRPS18C,LIAS,ASXL2,SLC25A17,TELO2,PNPLA8,CNBP,GTF2A2,MAP4K3,CARMIL1,FAM228B,TIGD1,ELK4,TWF1,ASAP1,USF3,CLASRP,FBXO11,DEDD,CWC25,TRAF4,TTC32,TAX1BP1,ZMAT1,CSGALNACT2,UTP6,ZNF18,TEX10,APPBP2,CYP2R1,KIFC1,POC1B,SPIRE2,CNOT2,C1orf109,RBM48,UBE2D3,PIKFYVE,AARSD1,RBM5,RAB3GAP1,NKTR,RNF41,FARP2,SLC30A9,CEP170,SLC35B3,CUL2,ERO1A,SCYL2,PARP6,WDR33,PACC1,C17orf80,TRA2B,PIAS2,CRIPT,TIPIN,ASXL1,TSC1,QRICH2,LRRC40,HSPB11,USPL1,CCDC112,LIG1,NELFA,PRPF4B,TRAPPC2,PPME1 | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | EEFSEC,SLC66A2,MGAT1,HAGH,STARD10,ECH1,GET3,INAFM1,NAGLU,GSTZ1,SLC25A11,MPDU1,BCKDK,NUCB1,TMEM53,HMGCL,KIAA0930,TMEM160,C12orf57,DCXR,TOM1,YIF1A,UBXN6,SMPD1,GPX4,ATP6V0D1,COL6A2,AP1B1,UQCRC1,WDR13,PNPLA6,PEPD,TOLLIP,CHCHD5,COPE,AP2A1,POLR2L,NDUFB10,BAD,ACP2,ECSIT,ZMAT5,OAF,DCAF11,PINK1,G6PD,MPST,NDUFV1,GALK1,BLVRB,WDR18,AKR7A2,HMOX2,RAB5C,AP1M1,HSD17B10,TXN2,KIAA2013,HSPBP1,JOSD2,AP2S1,CRAT,SDF4,ANXA6,NOSIP,EVA1B,LMAN2,CD81,CTSD,SELENOM,TPGS1,OGDH,NDUFS7,SDSL,MARCHF2,ATP5F1D,COX8A,FIS1,POLR2E,FCGRT,APEH,RIN3,NDUFB7,TECPR2,HCFC1R1,PMM1,POR,ILVBL | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
 |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000251022 | ENST00000504869 | exon_skip_5818 | chr1:45568484-45568684 | -17.64 | -0.1124 | AKR1A1 | ENST00000351829,ENST00000372070 | Frame-shift | | ENSG00000251022 | ENST00000503704 | exon_skip_41813 | chr10:68337857-68337996 | -15.92 | -0.1608 | HNRNPH3 | ENST00000265866 | Frame-shift | | ENSG00000251022 | ENST00000503704 | exon_skip_43507 | chr10:84499874-84499959 | -12.70 | -0.2309 | CCSER2 | ENST00000224756 | Frame-shift | | ENSG00000251022 | ENST00000503704 | exon_skip_95407 | chr12:95040475-95040597 | -13.06 | -0.1107 | NR2C1 | ENST00000333003 | Frame-shift | | ENSG00000251022 | ENST00000503704 | exon_skip_353131 | chr20:58669290-58669453 | -20.25 | -0.1731 | STX16 | ENST00000371141 | Frame-shift | | ENSG00000251022 | ENST00000503704 | exon_skip_380242 | chr3:186784961-186785101 | -13.95 | -0.1004 | EIF4A2 | ENST00000323963 | Frame-shift | | ENSG00000251022 | ENST00000503704 | exon_skip_382458 | chr3:38131595-38131638 | -9.68 | -0.2547 | ACAA1 | ENST00000333167 | Frame-shift | | ENSG00000251022 | ENST00000503704 | exon_skip_444499 | chr5:138164086-138164133 | -6.21 | -0.3653 | BRD8 | ENST00000254900 | Frame-shift | | ENSG00000251022 | ENST00000503704 | exon_skip_451515 | chr6:41080810-41080897 | -12.38 | -0.1821 | NFYA | ENST00000341376 | In-frame | | ENSG00000251022 | ENST00000503704 | exon_skip_9446 | chr1:147270931-147271005 | -9.75 | -0.1573 | CHD1L | ENST00000369258 | Frame-shift | | ENSG00000251022 | ENST00000503704 | exon_skip_23423 | chr1:26294204-26294331 | -15.86 | -0.1958 | UBXN11 | ENST00000374221,ENST00000374222 | Frame-shift | | ENSG00000251022 | ENST00000503704 | exon_skip_41841 | chr10:68756272-68756483 | -21.19 | -0.1843 | CCAR1 | ENST00000265872 | Frame-shift | | ENSG00000251022 | ENST00000503704 | exon_skip_62623 | chr11:69079833-69079883 | -7.86 | -0.1709 | TPCN2 | ENST00000294309 | Frame-shift | | ENSG00000251022 | ENST00000503704 | exon_skip_74009 | chr11:64773429-64773505 | -10.84 | -0.1777 | SF1 | ENST00000377390 | Frame-shift | | ENSG00000251022 | ENST00000503704 | exon_skip_114365 | chr14:74290026-74290118 | -12.20 | -0.1605 | ABCD4 | ENST00000356924 | Frame-shift | | ENSG00000251022 | ENST00000503704 | exon_skip_114376 | chr14:74293153-74293248 | -12.95 | -0.1619 | ABCD4 | ENST00000356924 | Frame-shift | | ENSG00000251022 | ENST00000503704 | exon_skip_133217 | chr16:8635038-8635079 | -9.63 | -0.3009 | METTL22 | ENST00000381920 | Frame-shift | | ENSG00000251022 | ENST00000503704 | exon_skip_290158 | chr17:42953723-42953778 | -7.32 | -0.1381 | AARSD1 | ENST00000427569 | Frame-shift | | ENSG00000251022 | ENST00000503704 | exon_skip_370518 | chr22:50247691-50247776 | -15.52 | -0.2503 | HDAC10 | ENST00000216271 | Frame-shift | | ENSG00000251022 | ENST00000503704 | exon_skip_377198 | chr3:123130479-123130616 | -22.71 | -0.1760 | PDIA5 | ENST00000316218 | Frame-shift | | ENSG00000251022 | ENST00000503704 | exon_skip_442657 | chr5:74730259-74730398 | -13.99 | -0.1727 | GFM2 | ENST00000296805,ENST00000509430 | Frame-shift | | ENSG00000251022 | ENST00000503704 | exon_skip_446758 | chr5:178212972-178213103 | -14.95 | -0.1424 | PHYKPL | ENST00000308158 | Frame-shift | | ENSG00000251022 | ENST00000503704 | exon_skip_470226 | chr7:103307595-103307708 | -11.29 | -0.1241 | PMPCB | ENST00000249269 | Frame-shift | | ENSG00000251022 | ENST00000503704 | exon_skip_11029 | chr1:154989559-154989707 | -15.83 | -0.1377 | FLAD1 | ENST00000292180 | Frame-shift | | ENSG00000251022 | ENST00000509007 | exon_skip_13857 | chr1:168038370-168038488 | -9.40 | -0.9400 | DCAF6 | ENST00000312263 | Frame-shift | | ENSG00000251022 | ENST00000503704 | exon_skip_374581 | chr3:50110378-50110463 | -13.10 | -0.1845 | RBM5 | ENST00000347869 | Frame-shift |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name | | LncEditing_142731 | ENSG00000251022.5 | chr4 | 82895348 | - | antisense | THAP9-AS1 | ENST00000512932.4 | antisense | THAP9-AS1-012 | | LncEditing_142814 | ENSG00000251022.5 | chr4 | 82896329 | - | antisense | THAP9-AS1 | ENST00000512932.4 | antisense | THAP9-AS1-012 | | LncEditing_142844 | ENSG00000251022.5 | chr4 | 82896362 | - | antisense | THAP9-AS1 | ENST00000512932.4 | antisense | THAP9-AS1-012 | | LncEditing_142859 | ENSG00000251022.5 | chr4 | 82896382 | - | antisense | THAP9-AS1 | ENST00000512932.4 | antisense | THAP9-AS1-012 | | LncEditing_142989 | ENSG00000251022.5 | chr4 | 82896587 | - | antisense | THAP9-AS1 | ENST00000512932.4 | antisense | THAP9-AS1-012 | | LncEditing_143034 | ENSG00000251022.5 | chr4 | 82896647 | - | antisense | THAP9-AS1 | ENST00000512932.4 | antisense | THAP9-AS1-012 | | LncEditing_143064 | ENSG00000251022.5 | chr4 | 82897563 | - | antisense | THAP9-AS1 | ENST00000512932.4 | antisense | THAP9-AS1-012 | | LncEditing_143099 | ENSG00000251022.5 | chr4 | 82897644 | - | antisense | THAP9-AS1 | ENST00000512932.4 | antisense | THAP9-AS1-012 | | LncEditing_143139 | ENSG00000251022.5 | chr4 | 82897725 | - | antisense | THAP9-AS1 | ENST00000512932.4 | antisense | THAP9-AS1-012 |
| Edited-associated DElncRNAs in cancer. |
 |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change | | ENSG00000251022 | LncEditing_143034 | UCS | chr4_82896647_- | 1.088911e+01 | 7.389778e+00 | 1.788003e+00 | 2.108215e+00 | 3.501243e-02 | 3.708944e-02 | UP | | ENSG00000251022 | LncEditing_142859 | KIRC | chr4_82896382_- | 9.332484e+00 | 6.103651e+00 | 1.632417e+00 | 7.923730e+00 | 2.304893e-15 | 4.425156e-15 | UP | | ENSG00000251022 | LncEditing_142989 | KIRC | chr4_82896587_- | 8.460503e+00 | 6.054224e+00 | 2.071245e+00 | 7.086547e+00 | 1.374993e-12 | 2.306139e-12 | UP | | ENSG00000251022 | LncEditing_143034 | KIRC | chr4_82896647_- | 8.484541e+00 | 5.463737e+00 | 1.574931e+00 | 1.052207e+01 | 6.835572e-26 | 2.526781e-25 | UP | | ENSG00000251022 | LncEditing_142859 | GBM | chr4_82896382_- | 7.687575e+00 | 6.003095e+00 | 2.802517e+00 | 2.689272e+00 | 7.160808e-03 | 7.976609e-03 | UP | | ENSG00000251022 | LncEditing_143034 | GBM | chr4_82896647_- | 7.766259e+00 | 5.908412e+00 | 2.535179e+00 | 3.411765e+00 | 6.454380e-04 | 8.197164e-04 | UP | | ENSG00000251022 | LncEditing_143034 | MESO | chr4_82896647_- | 7.809083e+00 | 5.854774e+00 | 2.406509e+00 | 2.573105e+00 | 1.007905e-02 | 1.196407e-02 | UP | | ENSG00000251022 | LncEditing_143034 | BLCA | chr4_82896647_- | 1.164377e+01 | 6.920865e+00 | 1.332384e+00 | 6.815574e+00 | 9.388845e-12 | 1.737256e-11 | UP | | ENSG00000251022 | LncEditing_142731 | LGG | chr4_82895348_- | 6.936413e+00 | 5.666979e+00 | 3.429238e+00 | 3.674786e+00 | 2.380488e-04 | 2.605619e-04 | UP | | ENSG00000251022 | LncEditing_142814 | LGG | chr4_82896329_- | 7.052058e+00 | 5.696228e+00 | 3.246358e+00 | 4.514554e+00 | 6.345023e-06 | 7.657412e-06 | UP | | ENSG00000251022 | LncEditing_143034 | LGG | chr4_82896647_- | 6.991807e+00 | 5.357933e+00 | 2.604243e+00 | 6.496736e+00 | 8.208108e-11 | 1.259766e-10 | UP | | ENSG00000251022 | LncEditing_143034 | COAD | chr4_82896647_- | 9.935497e+00 | 6.392971e+00 | 1.572066e+00 | 7.084557e+00 | 1.394895e-12 | 2.652791e-12 | UP | | ENSG00000251022 | LncEditing_143034 | LUSC | chr4_82896647_- | 1.003742e+01 | 6.321132e+00 | 1.498950e+00 | 1.012666e+01 | 4.207892e-24 | 1.562240e-23 | UP | | ENSG00000251022 | LncEditing_143034 | SKCM | chr4_82896647_- | 8.249760e+00 | 4.926194e+00 | 1.344305e+00 | 9.061240e+00 | 1.289763e-19 | 2.452367e-19 | UP | | ENSG00000251022 | LncEditing_142989 | LAML | chr4_82896587_- | 1.516909e+01 | 1.325112e+01 | 5.127664e+00 | 2.291481e+00 | 2.193560e-02 | 2.323368e-02 | UP | | ENSG00000251022 | LncEditing_142731 | KIRP | chr4_82895348_- | 1.039691e+01 | 6.266323e+00 | 1.368994e+00 | 4.077969e+00 | 4.543076e-05 | 5.999533e-05 | UP | | ENSG00000251022 | LncEditing_143034 | KIRP | chr4_82896647_- | 9.587841e+00 | 5.973256e+00 | 1.464797e+00 | 5.707713e+00 | 1.145042e-08 | 2.160185e-08 | UP | | ENSG00000251022 | LncEditing_143034 | THCA | chr4_82896647_- | 8.083811e+00 | 6.667941e+00 | 3.599787e+00 | 5.259610e+00 | 1.443614e-07 | 2.267476e-07 | UP | | ENSG00000251022 | LncEditing_142989 | CHOL | chr4_82896587_- | 1.189774e+01 | 7.088785e+00 | 1.338550e+00 | 2.214815e+00 | 2.677277e-02 | 3.130736e-02 | UP | | ENSG00000251022 | LncEditing_143034 | CHOL | chr4_82896647_- | 9.527234e+00 | 6.546870e+00 | 1.847568e+00 | 2.288964e+00 | 2.208144e-02 | 2.721038e-02 | UP | | ENSG00000251022 | LncEditing_143034 | THYM | chr4_82896647_- | 1.093983e+01 | 9.055618e+00 | 3.666961e+00 | 2.011193e+00 | 4.430503e-02 | 4.471755e-02 | UP | | ENSG00000251022 | LncEditing_142731 | OV | chr4_82895348_- | 8.052603e+00 | 6.278204e+00 | 2.784714e+00 | 4.343181e+00 | 1.404347e-05 | 1.700193e-05 | UP | | ENSG00000251022 | LncEditing_143034 | OV | chr4_82896647_- | 8.106113e+00 | 6.234067e+00 | 2.639660e+00 | 5.302371e+00 | 1.143081e-07 | 1.592520e-07 | UP | | ENSG00000251022 | LncEditing_143034 | READ | chr4_82896647_- | 8.465529e+00 | 6.128245e+00 | 2.145341e+00 | 3.080650e+00 | 2.065494e-03 | 2.321993e-03 | UP | | ENSG00000251022 | LncEditing_142989 | LUAD | chr4_82896587_- | 1.158697e+01 | 7.576246e+00 | 1.631459e+00 | 7.218667e+00 | 5.249946e-13 | 8.810955e-13 | UP | | ENSG00000251022 | LncEditing_143034 | LUAD | chr4_82896647_- | 1.009778e+01 | 6.725829e+00 | 1.705746e+00 | 9.812382e+00 | 9.958928e-23 | 3.884879e-22 | UP | | ENSG00000251022 | LncEditing_142731 | STAD | chr4_82895348_- | 6.812555e+00 | 5.822554e+00 | 4.414160e+00 | 2.725313e+00 | 6.424051e-03 | 6.690357e-03 | UP | | ENSG00000251022 | LncEditing_142859 | STAD | chr4_82896382_- | 7.562873e+00 | 5.778460e+00 | 2.575665e+00 | 4.081646e+00 | 4.471797e-05 | 5.176728e-05 | UP | | ENSG00000251022 | LncEditing_143034 | STAD | chr4_82896647_- | 7.362000e+00 | 5.327168e+00 | 2.142571e+00 | 6.414529e+00 | 1.412588e-10 | 2.330445e-10 | UP | | ENSG00000251022 | LncEditing_143034 | CESC | chr4_82896647_- | 1.158172e+01 | 9.152241e+00 | 2.944183e+00 | 5.223384e+00 | 1.756826e-07 | 2.701450e-07 | UP | | ENSG00000251022 | LncEditing_142989 | BRCA | chr4_82896587_- | 8.791845e+00 | 7.110652e+00 | 3.266010e+00 | 5.455958e+00 | 4.870947e-08 | 5.456361e-08 | UP | | ENSG00000251022 | LncEditing_143034 | BRCA | chr4_82896647_- | 8.928677e+00 | 6.466515e+00 | 2.148422e+00 | 1.112593e+01 | 9.382531e-29 | 1.680074e-28 | UP | | ENSG00000251022 | LncEditing_142731 | PAAD | chr4_82895348_- | 1.041786e+01 | 6.896762e+00 | 1.680482e+00 | 4.162485e+00 | 3.148025e-05 | 4.989323e-05 | UP | | ENSG00000251022 | LncEditing_143034 | PAAD | chr4_82896647_- | 9.387175e+00 | 6.332579e+00 | 1.760880e+00 | 5.892749e+00 | 3.798227e-09 | 1.372263e-08 | UP | | ENSG00000251022 | LncEditing_142844 | ESCA | chr4_82896362_- | 9.417559e+00 | 7.639961e+00 | 3.313586e+00 | 2.537620e+00 | 1.116090e-02 | 1.174360e-02 | UP | | ENSG00000251022 | LncEditing_142859 | ESCA | chr4_82896382_- | 9.550520e+00 | 7.020830e+00 | 2.252569e+00 | 4.139200e+00 | 3.485193e-05 | 4.600104e-05 | UP | | ENSG00000251022 | LncEditing_142989 | ESCA | chr4_82896587_- | 1.026489e+01 | 7.133176e+00 | 1.904392e+00 | 4.514353e+00 | 6.351037e-06 | 9.155278e-06 | UP | | ENSG00000251022 | LncEditing_143034 | ESCA | chr4_82896647_- | 9.150405e+00 | 6.261123e+00 | 1.826770e+00 | 5.175538e+00 | 2.272550e-07 | 4.026429e-07 | UP | | ENSG00000251022 | LncEditing_143064 | ESCA | chr4_82897563_- | 9.497453e+00 | 7.561661e+00 | 3.041015e+00 | 2.578927e+00 | 9.910784e-03 | 1.044920e-02 | UP | | ENSG00000251022 | LncEditing_143099 | ESCA | chr4_82897644_- | 1.033494e+01 | 7.457710e+00 | 2.124381e+00 | 3.241418e+00 | 1.189368e-03 | 1.348251e-03 | UP | | ENSG00000251022 | LncEditing_143139 | ESCA | chr4_82897725_- | 1.037025e+01 | 7.075632e+00 | 1.813170e+00 | 4.624662e+00 | 3.752089e-06 | 5.601409e-06 | UP |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value | | ENSG00000251022 | LncEditing_142731 | -3.651725e-01 | 4.457119e-03 | 6.170051e-03 | | ENSG00000251022 | LncEditing_142989 | -4.065588e-01 | 1.252381e-02 | 2.258010e-02 | | ENSG00000251022 | LncEditing_142814 | -4.216295e-01 | 1.210678e-03 | 1.469610e-03 |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
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| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type | | ENSG00000251022 | ENSG00000079134 | THOC1 | exon_skip_380242 | ENSG00000156976:chr3:186784961-186785101 | EIF4A2 | ENST00000323963 | Frame-shift | STAD,READ,PRAD,PCPG,THCA | | ENSG00000251022 | ENSG00000198000 | NOL8 | exon_skip_382458 | ENSG00000060971:chr3:38131595-38131638 | ACAA1 | ENST00000333167 | Frame-shift | STAD,UVM,SKCM,READ,THYM | | ENSG00000251022 | ENSG00000004534 | RBM6 | exon_skip_382458 | ENSG00000060971:chr3:38131595-38131638 | ACAA1 | ENST00000333167 | Frame-shift | UVM,SKCM,READ,PCPG,PAAD,TGCT,THCA | | ENSG00000251022 | ENSG00000161547 | SRSF2 | exon_skip_382458 | ENSG00000060971:chr3:38131595-38131638 | ACAA1 | ENST00000333167 | Frame-shift | STAD,UVM,SKCM,THYM,THCA | | ENSG00000251022 | ENSG00000079134 | THOC1 | exon_skip_382458 | ENSG00000060971:chr3:38131595-38131638 | ACAA1 | ENST00000333167 | Frame-shift | STAD,UVM,SKCM,READ,THYM,PCPG,PAAD,TGCT,THCA | | ENSG00000251022 | ENSG00000164548 | TRA2A | exon_skip_382458 | ENSG00000060971:chr3:38131595-38131638 | ACAA1 | ENST00000333167 | Frame-shift | UVM,READ,THYM,PCPG,PAAD,TGCT,THCA | | ENSG00000251022 | ENSG00000144161 | ZC3H8 | exon_skip_382458 | ENSG00000060971:chr3:38131595-38131638 | ACAA1 | ENST00000333167 | Frame-shift | STAD,UVM,SKCM,READ,OV,THYM,TGCT | | ENSG00000251022 | ENSG00000124193 | SRSF6 | exon_skip_382458 | ENSG00000060971:chr3:38131595-38131638 | ACAA1 | ENST00000333167 | Frame-shift | STAD,UVM,SKCM,READ,THYM,TGCT,THCA | | ENSG00000251022 | ENSG00000139746 | RBM26 | exon_skip_382458 | ENSG00000060971:chr3:38131595-38131638 | ACAA1 | ENST00000333167 | Frame-shift | STAD,UVM,SKCM,READ,THYM,TGCT,THCA | | ENSG00000251022 | ENSG00000004534 | RBM6 | exon_skip_290158 | ENSG00000266967:chr17:42953723-42953778 | AARSD1 | ENST00000427569 | Frame-shift | UVM,SKCM,READ,PAAD,TGCT | | ENSG00000251022 | ENSG00000004534 | RBM6 | exon_skip_377198 | ENSG00000065485:chr3:123130479-123130616 | PDIA5 | ENST00000316218 | Frame-shift | UVM,SKCM,READ,PCPG,TGCT | | ENSG00000251022 | ENSG00000004534 | RBM6 | exon_skip_470226 | ENSG00000105819:chr7:103307595-103307708 | PMPCB | ENST00000249269 | Frame-shift | UVM,SKCM,PCPG,PAAD,THCA | | ENSG00000251022 | ENSG00000079134 | THOC1 | exon_skip_470226 | ENSG00000105819:chr7:103307595-103307708 | PMPCB | ENST00000249269 | Frame-shift | UVM,SKCM,PCPG,PAAD,THCA |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000251022.5 | ENST00000504520.5 | 105 | 512 | 829 | | ENSG00000251022.5 | ENST00000504792.5 | 141 | 2681 | 2256 | | ENSG00000251022.5 | ENST00000512932.4 | 87 | 1972 | 2235 | | ENSG00000251022.5 | ENST00000511271.4 | 84 | 600 | 854 | | ENSG00000251022.5 | ENST00000508772.4 | 78 | 310 | 74 | | ENSG00000251022.5 | ENST00000513581.4 | 102 | 306 | 1 | | ENSG00000251022.5 | ENST00000504718.4 | 124 | 451 | 77 | | ENSG00000251022.5 | ENST00000505028.4 | 81 | 4 | 249 | | ENSG00000251022.5 | ENST00000507660.4 | 117 | 413 | 60 | | ENSG00000251022.5 | ENST00000509007.1 | 103 | 308 | 0 | | ENSG00000251022.5 | ENST00000504869.1 | 78 | 303 | 67 | | ENSG00000251022.5 | ENST00000503704.1 | 140 | 420 | 1 |
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