lncRNA targets the enhancer region and positively regulates the gene expression. |
Only predicted by TDF | MECOM,CXXC5,GATA6,FOXA3,UNC50,MYRF,TGIF2,RBM47,ZNF69,HNF1B | Exist in public source | NA |
lncRNA targets the promoter region and positively regulates the gene expression. |
lncRNA targets the promoter region and negatively regulates the gene expression. |
lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
lncRNA targets the skipped exon region. | -lncRNA and exonskipping events are positively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
-lncRNA and exonskipping events are negatively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | ENSG00000250742 | ENST00000508564 | exon_skip_75398 | chr11:72692752-72692785 | -13.68 | -0.6840 | ARAP1 | ENST00000393605 | In-frame |
lncRNA targets by miRNA. |
LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source | ENSG00000250742 | hsa-mir-193b | ENST00000508564 | chr12:54127090-54127158 | 177.00 | -74.33 | 78 | NA | ENSG00000250742 | hsa-mir-193b | ENST00000508564 | chr12:54126357-54126441 | 167.00 | -86.48 | 82 | NA | ENSG00000250742 | hsa-mir-193b | ENST00000508564 | chr12:54126184-54126263 | 164.00 | -78.03 | 82 | NA | ENSG00000250742 | hsa-mir-193b | ENST00000508564 | chr12:54127218-54127304 | 164.00 | -80.75 | 87 | NA | ENSG00000250742 | hsa-mir-193b | ENST00000508564 | chr12:54126516-54126604 | 162.00 | -76.16 | 88 | NA | ENSG00000250742 | hsa-mir-193b | ENST00000508564 | chr12:54127357-54127440 | 158.00 | -66.71 | 69 | NA | ENSG00000250742 | hsa-mir-193b | ENST00000508564 | chr12:54126758-54126834 | 155.00 | -78.80 | 80 | NA | ENSG00000250742 | hsa-mir-193b | ENST00000508564 | chr12:54126099-54126179 | 153.00 | -93.91 | 74 | NA | ENSG00000250742 | hsa-mir-193b | ENST00000508564 | chr12:54126901-54126981 | 141.00 | -79.09 | 79 | NA |
RNA A-to-I editing events in lncRNA. |
LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
Edited-associated DElncRNAs in cancer. |
LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
lncRNA regulates differentially expressed genes by function as enhancer. |
LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | ENSG00000250742.1 | ENST00000508564.1 | 67 | 58 | 261 |
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