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lncRNA: ENSG00000249572 |
Summary for TARS1-DT |
Gene summary |
Gene information | Ensembl ID | ENSG00000249572 | Gene symbol | TARS1-DT |
Gene name | TARS1 divergent transcript | |
HGNC | 55565 | |
Entrez ID | ||
Gene type | antisense | |
Synonyms | CTD-2203K17.1|05p13.3|TARS1-DT | |
UniProtAcc |
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Structure and expression level for TARS1-DT |
AS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure. |
Differentially expressed gene analysis between cancer and normal samples. |
Ensembl ID | Base mean | log2FC(AD/control) | lfcSE | Stat | P-value | Adjc.p-value | DEG direction | Cancer type |
ENSG00000249572 | 2.911601e+01 | 1.139876e+00 | 2.593662e-01 | 4.394851e+00 | 1.110000e-05 | 7.590000e-05 | UP | BLCA |
ENSG00000249572 | 4.689863e+01 | 1.394227e+00 | 1.643190e-01 | 8.484879e+00 | 2.160000e-17 | 1.210000e-16 | UP | LUSC |
Correlation between lncRNAs and cancer stages. |
LncRNA Ensembl ID | Correlation | P-value | Cancer Type | Adjc.p-value |
ENSG00000249572 | -3.152523e-01 | 2.619614e-03 | KICH | 3.356771e-03 |
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lncRNA-Protein interaction for TARS1-DT |
lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5). |
LncRNA Ensembl ID | LncRNA ENST ID | LncRNA Name | Protein Ensembl ID | Protein Name | CatRAPID Score | Lncpro Score | UniPortID | Gene Subtype | Public source |
ENSG00000249572 | ENST00000507251 | CTD-2203K17.1 | ENSG00000175054 | ATR | 77.9 | 91.7586 | Q13535 | Epi | NA |
ENSG00000249572 | ENST00000507251 | CTD-2203K17.1 | ENSG00000080503 | SMARCA2 | 93.07 | 92.0856 | P51531 | Epi | NA |
lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5). |
LncRNA Ensembl ID | LncRNA ENST ID | LncRNA Name | Protein Ensembl ID | Protein Name | CatRAPID Score | Lncpro Score | UniPortID | Gene Subtype | Public source |
lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5). |
LncRNA Ensembl ID | LncRNA ENST ID | LncRNA Name | Protein Ensembl ID | Protein Name | CatRAPID Score | Lncpro Score | UniPortID | Gene Subtype | Public source |
ENSG00000249572 | ENST00000507251 | CTD-2203K17.1 | ENSG00000114127 | XRN1 | 70.34 | 92.196 | Q8IZH2 | RBP | NA |
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