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lncRNA: ENSG00000248740 |
Summary for LINC02428 |
 Gene summary |
| Gene information | Ensembl ID | ENSG00000248740 | Gene symbol | LINC02428 |
| Gene name | long intergenic non-protein coding RNA 2428 | |
| HGNC | 53359 | |
| Entrez ID | ||
| Gene type | lincRNA | |
| Synonyms | 04q24|LINC02428|RP11-328K4.1 | |
| UniProtAcc |
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Structure and expression level for LINC02428 |
| AS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure. |
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| Differentially expressed gene analysis between cancer and normal samples. |
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| Ensembl ID | Base mean | log2FC(AD/control) | lfcSE | Stat | P-value | Adjc.p-value | DEG direction | Cancer type |
| ENSG00000248740 | 2.282277e+02 | -5.693817e+00 | 9.959625e-01 | -5.716899e+00 | 1.080000e-08 | 1.020000e-07 | DOWN | CHOL |
| ENSG00000248740 | 7.319163e+01 | 3.311778e+00 | 7.440696e-01 | 4.450898e+00 | 8.550000e-06 | 1.703420e-04 | UP | ESCA |
| ENSG00000248740 | 2.596210e+02 | -1.971748e+00 | 3.159283e-01 | -6.241124e+00 | 4.340000e-10 | 2.660000e-09 | DOWN | LIHC |
| Correlation between lncRNAs and cancer stages. |
| LncRNA Ensembl ID | Correlation | P-value | Cancer Type | Adjc.p-value |
| ENSG00000248740 | -5.923389e-01 | 1.815251e-05 | CHOL | 9.723734e-05 |
| ENSG00000248740 | -3.126518e-01 | 1.611029e-10 | LIHC | 5.768524e-10 |
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lncRNA-Protein interaction for LINC02428 |
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| lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5). |
| LncRNA Ensembl ID | LncRNA ENST ID | LncRNA Name | Protein Ensembl ID | Protein Name | CatRAPID Score | Lncpro Score | UniPortID | Gene Subtype | Public source |
| lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5). |
| LncRNA Ensembl ID | LncRNA ENST ID | LncRNA Name | Protein Ensembl ID | Protein Name | CatRAPID Score | Lncpro Score | UniPortID | Gene Subtype | Public source |
| lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5). |
| LncRNA Ensembl ID | LncRNA ENST ID | LncRNA Name | Protein Ensembl ID | Protein Name | CatRAPID Score | Lncpro Score | UniPortID | Gene Subtype | Public source |
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