 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | SOCS2 | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name | | LncEditing_255590 | ENSG00000246985.6 | chr12 | 93542554 | - | processed_transcript | SOCS2-AS1 | ENST00000500986.4 | antisense | SOCS2-AS1-002 | | LncEditing_255592 | ENSG00000246985.6 | chr12 | 93542555 | - | processed_transcript | SOCS2-AS1 | ENST00000500986.4 | antisense | SOCS2-AS1-002 | | LncEditing_255598 | ENSG00000246985.6 | chr12 | 93542565 | - | processed_transcript | SOCS2-AS1 | ENST00000500986.4 | antisense | SOCS2-AS1-002 | | LncEditing_255618 | ENSG00000246985.6 | chr12 | 93542624 | - | processed_transcript | SOCS2-AS1 | ENST00000500986.4 | antisense | SOCS2-AS1-002 | | LncEditing_255650 | ENSG00000246985.6 | chr12 | 93542759 | - | processed_transcript | SOCS2-AS1 | ENST00000500986.4 | antisense | SOCS2-AS1-002 | | LncEditing_255656 | ENSG00000246985.6 | chr12 | 93542773 | - | processed_transcript | SOCS2-AS1 | ENST00000500986.4 | antisense | SOCS2-AS1-002 | | LncEditing_255658 | ENSG00000246985.6 | chr12 | 93542776 | - | processed_transcript | SOCS2-AS1 | ENST00000500986.4 | antisense | SOCS2-AS1-002 | | LncEditing_255668 | ENSG00000246985.6 | chr12 | 93542928 | - | processed_transcript | SOCS2-AS1 | ENST00000500986.4 | antisense | SOCS2-AS1-002 | | LncEditing_255670 | ENSG00000246985.6 | chr12 | 93542929 | - | processed_transcript | SOCS2-AS1 | ENST00000500986.4 | antisense | SOCS2-AS1-002 | | LncEditing_255672 | ENSG00000246985.6 | chr12 | 93542932 | - | processed_transcript | SOCS2-AS1 | ENST00000500986.4 | antisense | SOCS2-AS1-002 | | LncEditing_255680 | ENSG00000246985.6 | chr12 | 93542958 | - | processed_transcript | SOCS2-AS1 | ENST00000500986.4 | antisense | SOCS2-AS1-002 | | LncEditing_255688 | ENSG00000246985.6 | chr12 | 93542985 | - | processed_transcript | SOCS2-AS1 | ENST00000500986.4 | antisense | SOCS2-AS1-002 | | LncEditing_255726 | ENSG00000246985.6 | chr12 | 93543060 | - | processed_transcript | SOCS2-AS1 | ENST00000500986.4 | antisense | SOCS2-AS1-002 | | LncEditing_255728 | ENSG00000246985.6 | chr12 | 93543064 | - | processed_transcript | SOCS2-AS1 | ENST00000500986.4 | antisense | SOCS2-AS1-002 | | LncEditing_255944 | ENSG00000246985.6 | chr12 | 93565298 | - | processed_transcript | SOCS2-AS1 | ENST00000547845.4 | retained_intron | SOCS2-AS1-003 |
| Edited-associated DElncRNAs in cancer. |
 |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change | | ENSG00000246985 | LncEditing_255592 | GBM | chr12_93542555_- | 4.643882e+00 | 2.054933e+00 | 8.501665e-01 | 7.068105e+00 | 1.570638e-12 | 1.166740e-11 | UP | | ENSG00000246985 | LncEditing_255598 | GBM | chr12_93542565_- | 4.426791e+00 | 1.927089e+00 | 8.334456e-01 | 7.387267e+00 | 1.498771e-13 | 1.638521e-12 | UP | | ENSG00000246985 | LncEditing_255618 | GBM | chr12_93542624_- | 3.660229e+00 | 2.309331e+00 | 1.504984e+00 | 5.281189e+00 | 1.283479e-07 | 2.903777e-07 | UP | | ENSG00000246985 | LncEditing_255650 | GBM | chr12_93542759_- | 2.893393e+00 | 2.604595e+00 | 6.591823e+00 | 2.533154e+00 | 1.130414e-02 | 1.222600e-02 | UP | | ENSG00000246985 | LncEditing_255658 | GBM | chr12_93542776_- | 3.984462e+00 | 2.038219e+00 | 1.034045e+00 | 6.413895e+00 | 1.418475e-10 | 6.136609e-10 | UP | | ENSG00000246985 | LncEditing_255668 | GBM | chr12_93542928_- | 2.960123e+00 | 2.549619e+00 | 4.643047e+00 | 4.215911e+00 | 2.487719e-05 | 3.841091e-05 | UP | | ENSG00000246985 | LncEditing_255680 | GBM | chr12_93542958_- | 3.862581e+00 | 2.499999e+00 | 1.593276e+00 | 4.019261e+00 | 5.838088e-05 | 8.374137e-05 | UP | | ENSG00000246985 | LncEditing_255728 | GBM | chr12_93543064_- | 3.020039e+00 | 2.582722e+00 | 4.431152e+00 | 3.040509e+00 | 2.361784e-03 | 2.785253e-03 | UP | | ENSG00000246985 | LncEditing_255590 | PCPG | chr12_93542554_- | 2.277706e+00 | 1.624000e+00 | 2.049058e+00 | 4.067403e+00 | 4.753992e-05 | 7.501428e-05 | UP | | ENSG00000246985 | LncEditing_255592 | PCPG | chr12_93542555_- | 2.456614e+00 | 1.303854e+00 | 1.094226e+00 | 7.645691e+00 | 2.078269e-14 | 3.060724e-13 | UP | | ENSG00000246985 | LncEditing_255598 | PCPG | chr12_93542565_- | 2.681866e+00 | 1.492291e+00 | 1.182440e+00 | 5.672585e+00 | 1.406589e-08 | 4.618936e-08 | UP | | ENSG00000246985 | LncEditing_255650 | PCPG | chr12_93542759_- | 2.225228e+00 | 1.526108e+00 | 1.837911e+00 | 4.780979e+00 | 1.744434e-06 | 3.686065e-06 | UP | | ENSG00000246985 | LncEditing_255656 | PCPG | chr12_93542773_- | 2.352382e+00 | 1.317416e+00 | 1.195583e+00 | 7.000470e+00 | 2.551061e-12 | 2.339275e-11 | UP | | ENSG00000246985 | LncEditing_255658 | PCPG | chr12_93542776_- | 2.393965e+00 | 1.347235e+00 | 1.205690e+00 | 7.119678e+00 | 1.081795e-12 | 1.072964e-11 | UP | | ENSG00000246985 | LncEditing_255668 | PCPG | chr12_93542928_- | 2.452129e+00 | 1.443137e+00 | 1.307487e+00 | 6.183442e+00 | 6.271888e-10 | 2.959357e-09 | UP | | ENSG00000246985 | LncEditing_255670 | PCPG | chr12_93542929_- | 2.250310e+00 | 1.037075e+00 | 8.947717e-01 | 9.619951e+00 | 6.586236e-22 | 6.745987e-20 | UP | | ENSG00000246985 | LncEditing_255672 | PCPG | chr12_93542932_- | 2.557069e+00 | 1.311836e+00 | 1.038525e+00 | 7.906110e+00 | 2.655569e-15 | 4.302021e-14 | UP | | ENSG00000246985 | LncEditing_255688 | PCPG | chr12_93542985_- | 2.049269e+00 | 9.314233e-01 | 8.790432e-01 | 8.561801e+00 | 1.111182e-17 | 3.176672e-16 | UP | | ENSG00000246985 | LncEditing_255726 | PCPG | chr12_93543060_- | 2.150034e+00 | 9.571761e-01 | 8.565288e-01 | 9.414531e+00 | 4.752004e-21 | 2.886842e-19 | UP | | ENSG00000246985 | LncEditing_255650 | THYM | chr12_93542759_- | 2.702615e+00 | 1.823720e+00 | 1.762203e+00 | 1.994463e+00 | 4.610151e-02 | 4.631009e-02 | UP | | ENSG00000246985 | LncEditing_255656 | THYM | chr12_93542773_- | 3.250650e+00 | 1.420100e+00 | 8.370051e-01 | 5.172210e+00 | 2.313409e-07 | 7.787999e-07 | UP | | ENSG00000246985 | LncEditing_255668 | THYM | chr12_93542928_- | 3.247104e+00 | 1.748652e+00 | 1.119933e+00 | 3.756765e+00 | 1.721243e-04 | 2.835604e-04 | UP | | ENSG00000246985 | LncEditing_255656 | PRAD | chr12_93542773_- | 7.953758e+00 | 7.273051e+00 | 7.747372e+00 | 1.998497e+00 | 4.566281e-02 | 4.597397e-02 | UP | | ENSG00000246985 | LncEditing_255658 | PRAD | chr12_93542776_- | 6.469305e+00 | 7.829369e+00 | -3.632594e+00 | -2.347937e+00 | 1.887772e-02 | 1.971154e-02 | DOWN | | ENSG00000246985 | LncEditing_255672 | PRAD | chr12_93542932_- | 8.374485e+00 | 6.411438e+00 | 2.595026e+00 | 5.528036e+00 | 3.238354e-08 | 5.158671e-08 | UP | | ENSG00000246985 | LncEditing_255688 | PRAD | chr12_93542985_- | 7.742643e+00 | 3.582167e+00 | 8.992857e-01 | 5.202626e+00 | 1.964925e-07 | 2.881565e-07 | UP | | ENSG00000246985 | LncEditing_255726 | PRAD | chr12_93543060_- | 7.707689e+00 | 3.839010e+00 | 9.944665e-01 | 4.665342e+00 | 3.081041e-06 | 4.215035e-06 | UP |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value | | ENSG00000246985 | LncEditing_255658 | -4.618792e-01 | 4.650045e-02 | 4.796889e-02 | | ENSG00000246985 | LncEditing_255598 | -4.945636e-01 | 2.946834e-03 | 7.954140e-03 | | ENSG00000246985 | LncEditing_255650 | -3.402350e-01 | 1.675651e-02 | 2.249504e-02 | | ENSG00000246985 | LncEditing_255656 | -3.066622e-01 | 9.821303e-03 | 1.512065e-02 | | ENSG00000246985 | LncEditing_255668 | -5.841072e-01 | 1.052808e-05 | 1.719587e-04 | | ENSG00000246985 | LncEditing_255592 | -6.376557e-01 | 1.505133e-04 | 8.676649e-04 | | ENSG00000246985 | LncEditing_255656 | -3.242110e-01 | 3.620042e-02 | 3.774087e-02 | | ENSG00000246985 | LncEditing_255658 | -5.867491e-01 | 1.628765e-03 | 3.990474e-03 | | ENSG00000246985 | LncEditing_255672 | -5.588614e-01 | 2.654364e-04 | 1.154994e-03 | | ENSG00000246985 | LncEditing_255688 | -4.255071e-01 | 2.162649e-04 | 1.009236e-03 | | ENSG00000246985 | LncEditing_255656 | -3.288471e-01 | 5.382547e-07 | 4.395564e-06 | | ENSG00000246985 | LncEditing_255672 | -3.391342e-01 | 2.119245e-09 | 4.329314e-08 | | ENSG00000246985 | LncEditing_255688 | -4.057979e-01 | 1.270587e-02 | 2.274508e-02 | | ENSG00000246985 | LncEditing_255944 | -6.647929e-01 | 6.852628e-03 | 1.628903e-02 |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation | | ENSG00000246985 | ENSG00000120833 | SOCS2 | CHOL,GBM,LAML,PCPG,PRAD,SARC,THYM | GBM | |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000246985.6 | ENST00000499137.5 | 92 | 52 | 327 | | ENSG00000246985.6 | ENST00000500986.4 | 96 | 776 | 1066 | | ENSG00000246985.6 | ENST00000547845.4 | 123 | 646 | 275 | | ENSG00000246985.6 | ENST00000551626.1 | 85 | 350 | 93 |
|
