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lncRNA: ENSG00000246695

Summary for RASSF8-AS1

Gene summary

Gene information	Ensembl ID	ENSG00000246695
	Gene symbol	RASSF8-AS1
	Gene name	RASSF8 antisense RNA 1
	HGNC	48637
	Entrez ID
	Gene type	antisense
	Synonyms	RASSF8-AS1\|12p12.1
	UniProtAcc

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Structure and expression level for RASSF8-AS1

AS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure.

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000246695	5.252914e+02	-1.016660e+00	9.042849e-02	-1.124270e+01	2.520000e-29	2.500000e-28	DOWN	KIRC
ENSG00000246695	5.080010e+02	-1.461022e+00	1.628674e-01	-8.970622e+00	2.950000e-19	4.480000e-18	DOWN	KICH

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000246695	-5.476612e-01	2.787790e-08	KICH	1.291356e-07

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lncRNA-Protein interaction for RASSF8-AS1

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000246695	ENST00000535436	RASSF8-AS1	ENSG00000111676	ATN1	42.47	91.9323	P54259	Epi	NA
ENSG00000246695	ENST00000500276	RASSF8-AS1	ENSG00000168395	ING5	21.8	92.9996	Q8WYH8	Epi	NA
ENSG00000246695	ENST00000500276	RASSF8-AS1	ENSG00000015171	ZMYND11	18.04	93.7824	Q15326	Epi	NA
ENSG00000246695	ENST00000500276	RASSF8-AS1	ENSG00000119760	SUPT7L	4.81	91.2658	O94864	Epi	NA
ENSG00000246695	ENST00000535436	RASSF8-AS1	ENSG00000102226	USP11	69.02	91.6537	P51784	Epi	NA
ENSG00000246695	ENST00000500276	RASSF8-AS1	ENSG00000139154	AEBP2	31.59	93.3263	Q6ZN18	TF,Epi	NA

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000246695	ENST00000535436	RASSF8-AS1	ENSG00000099326	MZF1	81.45	93.1961	P28698	TF	NA
ENSG00000246695	ENST00000535436	RASSF8-AS1	ENSG00000165821	SALL2	56.61	90.8321	Q9Y467	TF	NA
ENSG00000246695	ENST00000535436	RASSF8-AS1	ENSG00000198040	ZNF84	54.63	93.7843	P51523	TF	NA
ENSG00000246695	ENST00000500276	RASSF8-AS1	ENSG00000099326	MZF1	47.36	95.2756	P28698	TF	NA
ENSG00000246695	ENST00000500276	RASSF8-AS1	ENSG00000180787	ZFP3	45.79	94.5859	Q96NJ6	TF	NA
ENSG00000246695	ENST00000500276	RASSF8-AS1	ENSG00000165821	SALL2	43.99	93.5972	Q9Y467	TF	NA
ENSG00000246695	ENST00000500276	RASSF8-AS1	ENSG00000123411	IKZF4	41.13	93.4309	Q9H2S9	TF	NA
ENSG00000246695	ENST00000500276	RASSF8-AS1	ENSG00000198040	ZNF84	40.84	96.1323	P51523	TF	NA
ENSG00000246695	ENST00000500276	RASSF8-AS1	ENSG00000166432	ZMAT1	33.68	94.2821	Q5H9K5	TF	NA
ENSG00000246695	ENST00000500276	RASSF8-AS1	ENSG00000065029	ZNF76	31.77	94.9863	P36508	TF	NA
ENSG00000246695	ENST00000500276	RASSF8-AS1	ENSG00000139154	AEBP2	31.59	93.3411	Q6ZN18	TF,Epi	NA
ENSG00000246695	ENST00000500276	RASSF8-AS1	ENSG00000062194	GPBP1	27.28	93.7157	Q86WP2	TF	NA
ENSG00000246695	ENST00000500102	RASSF8-AS1	ENSG00000198040	ZNF84	25.84	92.8018	P51523	TF	NA
ENSG00000246695	ENST00000500276	RASSF8-AS1	ENSG00000154957	ZNF18	24.73	93.6106	P17022	TF	NA
ENSG00000246695	ENST00000500276	RASSF8-AS1	ENSG00000134138	MEIS2	18.55	93.2044	O14770	TF	NA
ENSG00000246695	ENST00000500276	RASSF8-AS1	ENSG00000196378	ZNF34	17.12	95.7043	Q8IZ26	TF	NA
ENSG00000246695	ENST00000500276	RASSF8-AS1	ENSG00000136936	XPA	15.24	91.4762	P23025	TF	NA
ENSG00000246695	ENST00000535436	RASSF8-AS1	ENSG00000139154	AEBP2	13.17	90.2918	Q6ZN18	TF,Epi	NA
ENSG00000246695	ENST00000535436	RASSF8-AS1	ENSG00000102901	CENPT	12.76	90.4531	Q96BT3	TF	NA
ENSG00000246695	ENST00000535436	RASSF8-AS1	ENSG00000065029	ZNF76	12.41	93.8089	P36508	TF	NA
ENSG00000246695	ENST00000500276	RASSF8-AS1	ENSG00000175395	ZNF25	11.61	95.0308	P17030	TF	NA
ENSG00000246695	ENST00000535436	RASSF8-AS1	ENSG00000180787	ZFP3	9.79	92.5832	Q96NJ6	TF	NA
ENSG00000246695	ENST00000535436	RASSF8-AS1	ENSG00000196378	ZNF34	5.31	92.6105	Q8IZ26	TF	NA
ENSG00000246695	ENST00000500102	RASSF8-AS1	ENSG00000196378	ZNF34	3.18	91.4631	Q8IZ26	TF	NA
ENSG00000246695	ENST00000535436	RASSF8-AS1	ENSG00000175395	ZNF25	2.44	93.6841	P17030	TF	NA
ENSG00000246695	ENST00000500102	RASSF8-AS1	ENSG00000175395	ZNF25	2.07	91.3609	P17030	TF	NA

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000246695	ENST00000500276	RASSF8-AS1	ENSG00000173914	RBM4B	57.12	91.7095	Q9BQ04	RBP	NA
ENSG00000246695	ENST00000500276	RASSF8-AS1	ENSG00000124193	SRSF6	55.76	95.3062	Q13247	RBP	NA
ENSG00000246695	ENST00000500276	RASSF8-AS1	ENSG00000163728	TTC14	54.39	90.6927	Q96N46	RBP	NA
ENSG00000246695	ENST00000500102	RASSF8-AS1	ENSG00000124193	SRSF6	9.47	92.8125	Q13247	RBP	NA

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lncRNA-DNA interaction for RASSF8-AS1

lncRNA targets the enhancer region and positively regulates the gene expression.

Only predicted by TDF

CASTOR3,ARHGEF9,COL4A5,TSPYL2,IPO8,IST1,MORN2,C11orf1,RAB28,CEP112,NMNAT3,CPLANE1,PREPL,IFT57,GEMIN8,DNALI1,TAF6L,ERI2,USP2,BOD1,PAQR5,CTF1,TMEM17,IFT22,DNAJC27,ATPSCKMT,EVC2,PKP4,MDM1,FASTKD3,DYNC2LI1,ATN1,JAZF1,NICN1,PNPLA4,CEP57,MZF1,RIBC1,C1orf56,PEBP1,NEK11,RTKN,PPOX,ITFG2,BBOF1,CCDC92,KAT8,SUGP2,HSBP1,KCTD6,VEZF1,GCSH,AASDH,CSAD,TMTC1,KIAA0895L,MIEF2,KIAA0895,KLHL13,SPIN3,MAGI2,NME5,SEMA5A,OSCP1,TMEM150A,IFT88,SSPN,TMED4,BIVM,TUB,OBSL1,C20orf96,C2CD5,KLHDC1,POFUT2,TTC30B,DCAKD,MNS1,TOM1L2,RNPC3,ST7L,CCDC74B,B4GAT1,NECAP1,INCA1,MSANTD2,WDR59,ZMYND12,ZNF25,GABBR1,NIPSNAP3B,GALNT18,DDX59,N6AMT1,BTBD19,LRRC75B,MRI1,MKS1,ADD1,KANSL3,SLC18B1,USP11,RBKS,SUPT7L,TMEM220,EXTL2,IFT140,CDON,NOTCH4,RGL1,CENPT,CTSO,TTC14,G6PC3,KLHL42,ZBED3,STK33,CALCOCO1,UFSP2,DRC3,GPRASP2,TOGARAM1,LPGAT1,POGZ,CDK20,NAP1L2,PCCA,FAM104B,C19orf44,CAPN7,IQCD,TMEM192,FGFR1OP2,RBM4B,LRRC23,NUDT12,TMCO1,DNAJB2,TMEM99,ECHDC2,APOM,CYB5D2,TIGD6,BEND5,SPATA6,TCTA,LPAR1,ORC4,CA11,IKZF4,NFIA,ENDOV,MEIS2,LYPLAL1,BBS10,SLC22A17,RNF150,IFT80,MLH3,BBS2,CLSTN3,RBM43,POLI,PAQR7,TTC30A,GLT8D1,HSPA12A,ACAD10,TMEM231,SPHK2,ETNK1,ZNF34,P4HTM,MRNIP,KIAA0753,RABL2A,THAP6,WDFY3,ELMOD3,ZFAND1,WASHC3,CASP9,GSTM2,INTS13,SLC25A29,SUOX,C9orf116,RAD52,CETN2,SBDS,CYP4V2,BBS12,LAMB1,MIS12,DERL2,REEP5,NINL,CEP290,DBT,PPP1R3F,ENOSF1,TTC8,IFT46,PAXBP1,PNMA8A,TSPAN12,ZADH2,TMEM107,WSB1,MAP6,SEMA3B,ARSK,C17orf97,POMT2,ZBED8,DENND6B,NUBPL,FAM228B,USP21,RWDD2B,IL11RA,CCDC121,SDCCAG8,CETN3,C5orf15,BHLHB9,KCTD2,C16orf89,TRIM52,RPS6KA6,PPP1R21,USP40,SSBP2,SPIN2B,UNC50,NFIB,SLC22A5,PTPN14,ATP6V1E2,CCDC96,BBS9,DNAJC18,PTPN13,MCFD2,SALL2,AAK1,MLH1,TYW3,PLD2,ZMAT1,RABL3,ATG4B,SPATA20,RASSF8,CCDC191,NSUN6,MARVELD2,POMGNT2,ADHFE1,DCUN1D2,UBXN2A,PCSK4,CBR4,GSAP,ZNF18,EIF2D,RAB11FIP3,IL17RC,LRTOMT,ERGIC2,SGCE,GPBP1,RNF157,PLSCR4,ERBB2,DTX3,RNF215,THEM4,SPAG16,SORBS2,RBM5,ULK2,MLF2,LUC7L,NFYB,URGCP,SFXN5,TMEM25,COA5,C3orf33,EPM2AIP1,TTC12,FBXO21,ZNF84,SUCLG1,GAS8,WDR35,SYNGAP1,PSME3IP1,SCD5,CCDC24,TRA2A,ISYNA1,SPAG1,HOOK1,MPPE1,SEPHS1,UBXN11,HEBP1,TDRP,B9D1,PRPF40B,NEURL4,NUP62CL,XPA,MAPK10,PGGT1B,PCBD2,NR2C1,MRPS14,KATNIP,PLXNB1,LRRC6,CRELD1,ZFP3,RCBTB2,NGRN,PIGB,TM7SF3,RCHY1,FBXL14,NRIP2,LTBP3,BDH2,TPCN1,MAN2C1,B3GNT9,AMT,DXO,TMEM59,SMARCA1,ASB8,WBP1,ERMAP,CCDC57,RABL2B,USP13,MTCH1,IQCC,FBXO4

Exist in public source

lncRNA targets the promoter region and positively regulates the gene expression.

Only predicted by TDF

CC2D2A,SORBS2,LPGAT1,SSPN,NUBPL,ZNF18,G6PC3,ETAA1,ZMAT1,CA11,PGPEP1,RBM43,RAD52,EIF2D,CMAS,EFHC1,FAM173B,MARVELD2,CLCN4,TRA2A,BEX2,ANK2,IST1,C1orf56,RBM5,CEP290,CCDC53,C2orf74,NICN1,TMEM98,C19orf44,MDM1,RCHY1,NMNAT3,THEM4,KLHDC10,TIGD6,MAP6,NME5,PRPF40B,HOOK1,URGCP,CLCN5,BEND5,BDH2,CTSO,PRPF3,ENOSF1,USP2,OSCP1,FAM179B,ERMAP,PLEKHA5,MCCC2,LUC7L,C14orf79,CCDC66,MZF1,GEMIN8,SLC25A14,DNAJC18,WASF3,ZFAND1,C2CD5,IFT57,NUDT7,RTKN,USP13,ERGIC2,POGZ,GALNT18,ELAC1,NINL,RASSF8,SAT2,CSAD,WSB1,IFT81,MAGEF1,UFSP2,SBDS,GSTM2,RWDD2B,THAP6,MRPS14,KCTD3,WDR35,ING5,PKIG,CDK20,DYNC2LI1,CDON,SPIN2B,EML1,MED21,PNMAL1,APOM,FIBIN,DERL2,TOM1L2,ATP1A1,PCBD2,N6AMT1,ZFP3,MIS12,TTC30B,C20orf96,ERI2,NFIA,NUDT12,KIAA0556,KCTD2

Exist in public source

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for RASSF8-AS1

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

PPP6R1,TMEM131L,SELPLG,TKT,ORAI1

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

lncRNA and exonskipping events positive correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	ORF mutation
ENSG00000246695	ENST00000537801	exon_skip_48296	chr10:26755654-26755741	-13.56	-0.1910	ABI1	ENST00000376142	In-frame
ENSG00000246695	ENST00000537801	exon_skip_343108	chr2:127051153-127051243	-16.51	-0.1898	BIN1	ENST00000316724	In-frame
ENSG00000246695	ENST00000537801	exon_skip_499791	chr9:128627924-128627942	-4.80	-0.8000	SPTAN1	ENST00000372731	In-frame
ENSG00000246695	ENST00000537801	exon_skip_509230	chrX:13763744-13763855	-18.67	-0.3112	OFD1	ENST00000340096	In-frame
ENSG00000246695	ENST00000537801	exon_skip_52894	chr10:98431130-98431291	-22.32	-0.1786	HPS1	ENST00000325103,ENST00000361490	Frame-shift
ENSG00000246695	ENST00000537801	exon_skip_506519	chr9:120407011-120407248	-30.02	-0.1322	CDK5RAP2	ENST00000349780	In-frame
ENSG00000246695	ENST00000537801	exon_skip_353171	chr20:58898940-58898985	-12.96	-0.4320	GNAS	ENST00000371085,ENST00000371100	In-frame

-lncRNA and exonskipping events are negatively correlated.

lncRNA and exonskipping events negative correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	LOF
ENSG00000246695	ENST00000537801	exon_skip_111863	chr14:23565815-23565892	-13.89	-0.1903	AP1G2	ENST00000308724,ENST00000397120	Frame-shift
ENSG00000246695	ENST00000537801	exon_skip_289780	chr17:41896619-41896649	-8.49	-0.5660	ACLY	ENST00000352035,ENST00000590151	In-frame
ENSG00000246695	ENST00000537801	exon_skip_149052	chr17:8289502-8289588	-10.84	-0.1694	RANGRF	ENST00000226105	Frame-shift
ENSG00000246695	ENST00000537801	exon_skip_326885	chr2:74490024-74490127	-17.55	-0.1773	TTC31	ENST00000233623	Frame-shift
ENSG00000246695	ENST00000537801	exon_skip_374375	chr3:49675182-49675309	-19.11	-0.1566	APEH	ENST00000296456	Frame-shift
ENSG00000246695	ENST00000537801	exon_skip_494079	chr8:144099080-144099205	-27.72	-0.2235	SHARPIN	ENST00000398712	Frame-shift

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

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Variants for RASSF8-AS1

RNA A-to-I editing events in lncRNA.

LncRNAediting ID	LncRNA Ensembl ID	Chromosome	Editing Position	Strand	Gene Type	Gene Name	Transcript ID	Transcript Type	Transcript Name
LncEditing_250914	ENSG00000246695.6	chr12	25948602	-	antisense	RASSF8-AS1	ENST00000545729.4	antisense	RASSF8-AS1-005
LncEditing_250916	ENSG00000246695.6	chr12	25948603	-	antisense	RASSF8-AS1	ENST00000545729.4	antisense	RASSF8-AS1-005
LncEditing_250944	ENSG00000246695.6	chr12	25948761	-	antisense	RASSF8-AS1	ENST00000545729.4	antisense	RASSF8-AS1-005
LncEditing_250954	ENSG00000246695.6	chr12	25948949	-	antisense	RASSF8-AS1	ENST00000545729.4	antisense	RASSF8-AS1-005
LncEditing_250968	ENSG00000246695.6	chr12	25949031	-	antisense	RASSF8-AS1	ENST00000545729.4	antisense	RASSF8-AS1-005
LncEditing_250970	ENSG00000246695.6	chr12	25949035	-	antisense	RASSF8-AS1	ENST00000545729.4	antisense	RASSF8-AS1-005
LncEditing_250986	ENSG00000246695.6	chr12	25949123	-	antisense	RASSF8-AS1	ENST00000545729.4	antisense	RASSF8-AS1-005
LncEditing_250994	ENSG00000246695.6	chr12	25949154	-	antisense	RASSF8-AS1	ENST00000545729.4	antisense	RASSF8-AS1-005
LncEditing_250996	ENSG00000246695.6	chr12	25949155	-	antisense	RASSF8-AS1	ENST00000545729.4	antisense	RASSF8-AS1-005
LncEditing_250998	ENSG00000246695.6	chr12	25949159	-	antisense	RASSF8-AS1	ENST00000545729.4	antisense	RASSF8-AS1-005
LncEditing_251008	ENSG00000246695.6	chr12	25949527	-	antisense	RASSF8-AS1	ENST00000545729.4	antisense	RASSF8-AS1-005
LncEditing_251012	ENSG00000246695.6	chr12	25949782	-	antisense	RASSF8-AS1	ENST00000545729.4	antisense	RASSF8-AS1-005
LncEditing_251022	ENSG00000246695.6	chr12	25949804	-	antisense	RASSF8-AS1	ENST00000545729.4	antisense	RASSF8-AS1-005
LncEditing_251056	ENSG00000246695.6	chr12	25950008	-	antisense	RASSF8-AS1	ENST00000545729.4	antisense	RASSF8-AS1-005
LncEditing_251080	ENSG00000246695.6	chr12	25950376	-	antisense	RASSF8-AS1	ENST00000545729.4	antisense	RASSF8-AS1-005
LncEditing_251086	ENSG00000246695.6	chr12	25950398	-	antisense	RASSF8-AS1	ENST00000545729.4	antisense	RASSF8-AS1-005
LncEditing_251092	ENSG00000246695.6	chr12	25950415	-	antisense	RASSF8-AS1	ENST00000545729.4	antisense	RASSF8-AS1-005
LncEditing_251164	ENSG00000246695.6	chr12	25952833	-	antisense	RASSF8-AS1	ENST00000545729.4	antisense	RASSF8-AS1-005
LncEditing_251175	ENSG00000246695.6	chr12	25952866	-	antisense	RASSF8-AS1	ENST00000545729.4	antisense	RASSF8-AS1-005
LncEditing_251187	ENSG00000246695.6	chr12	25952893	-	antisense	RASSF8-AS1	ENST00000545729.4	antisense	RASSF8-AS1-005
LncEditing_251193	ENSG00000246695.6	chr12	25952914	-	antisense	RASSF8-AS1	ENST00000545729.4	antisense	RASSF8-AS1-005
LncEditing_251208	ENSG00000246695.6	chr12	25952957	-	antisense	RASSF8-AS1	ENST00000545729.4	antisense	RASSF8-AS1-005
LncEditing_251274	ENSG00000246695.6	chr12	25953597	-	antisense	RASSF8-AS1	ENST00000545729.4	antisense	RASSF8-AS1-005
LncEditing_251306	ENSG00000246695.6	chr12	25953754	-	antisense	RASSF8-AS1	ENST00000545729.4	antisense	RASSF8-AS1-005

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID	LncRNA Index	Cancer Type	Chr_Postion_Strand	AVE1	AVE2	log2FC	W-value	P-value	Adjc.p-value	Change
ENSG00000246695	LncEditing_251164	KIRC	chr12_25952833_-	2.732097e+00	1.920293e+00	1.965865e+00	6.264269e+00	3.745779e-10	5.544052e-10	UP
ENSG00000246695	LncEditing_250986	GBM	chr12_25949123_-	5.525337e+00	3.623489e+00	1.642892e+00	4.625375e+00	3.739206e-06	6.590452e-06	UP
ENSG00000246695	LncEditing_250994	GBM	chr12_25949154_-	5.120308e+00	3.670532e+00	2.082286e+00	3.551150e+00	3.835510e-04	5.004722e-04	UP
ENSG00000246695	LncEditing_250996	GBM	chr12_25949155_-	5.151452e+00	3.685374e+00	2.069673e+00	3.224702e+00	1.261039e-03	1.536417e-03	UP
ENSG00000246695	LncEditing_250998	GBM	chr12_25949159_-	5.132203e+00	3.717823e+00	2.149983e+00	3.035744e+00	2.399433e-03	2.821426e-03	UP
ENSG00000246695	LncEditing_251008	GBM	chr12_25949527_-	5.235445e+00	3.723604e+00	2.034122e+00	3.115430e+00	1.836766e-03	2.194895e-03	UP
ENSG00000246695	LncEditing_251086	GBM	chr12_25950398_-	5.161616e+00	3.703799e+00	2.088482e+00	3.354444e+00	7.952453e-04	9.959032e-04	UP
ENSG00000246695	LncEditing_251164	GBM	chr12_25952833_-	4.935418e+00	3.363350e+00	1.807425e+00	5.762597e+00	8.282917e-09	2.318643e-08	UP
ENSG00000246695	LncEditing_251187	GBM	chr12_25952893_-	5.211559e+00	3.609117e+00	1.886547e+00	5.027700e+00	4.963981e-07	1.015423e-06	UP
ENSG00000246695	LncEditing_251193	GBM	chr12_25952914_-	5.344458e+00	3.676435e+00	1.852758e+00	3.695495e+00	2.194587e-04	2.934579e-04	UP
ENSG00000246695	LncEditing_251306	GBM	chr12_25953754_-	5.395592e+00	3.725586e+00	1.871559e+00	2.534905e+00	1.124779e-02	1.218134e-02	UP
ENSG00000246695	LncEditing_251164	MESO	chr12_25952833_-	5.184691e+00	2.281508e+00	8.444019e-01	4.445679e+00	8.761453e-06	3.538717e-05	UP
ENSG00000246695	LncEditing_250914	LGG	chr12_25948602_-	5.131475e+00	3.721675e+00	2.157863e+00	8.602661e+00	7.788884e-18	2.021673e-17	UP
ENSG00000246695	LncEditing_250916	LGG	chr12_25948603_-	5.020225e+00	3.797815e+00	2.483964e+00	6.803746e+00	1.019331e-11	1.656540e-11	UP
ENSG00000246695	LncEditing_250944	LGG	chr12_25948761_-	4.817301e+00	3.657161e+00	2.515719e+00	8.456979e+00	2.743921e-17	6.893980e-17	UP
ENSG00000246695	LncEditing_250954	LGG	chr12_25948949_-	5.015963e+00	3.839670e+00	2.593735e+00	5.614762e+00	1.968325e-08	2.672380e-08	UP
ENSG00000246695	LncEditing_250968	LGG	chr12_25949031_-	4.585988e+00	3.851770e+00	3.972807e+00	4.408422e+00	1.041263e-05	1.233677e-05	UP
ENSG00000246695	LncEditing_250970	LGG	chr12_25949035_-	4.624760e+00	3.690428e+00	3.071346e+00	6.951411e+00	3.616502e-12	6.050356e-12	UP
ENSG00000246695	LncEditing_250986	LGG	chr12_25949123_-	5.159595e+00	3.757449e+00	2.185771e+00	8.126931e+00	4.402966e-16	9.899662e-16	UP
ENSG00000246695	LncEditing_250994	LGG	chr12_25949154_-	5.384651e+00	3.768689e+00	1.942539e+00	7.460273e+00	8.634365e-14	1.608407e-13	UP
ENSG00000246695	LncEditing_250996	LGG	chr12_25949155_-	5.291058e+00	3.775050e+00	2.053133e+00	7.312293e+00	2.626209e-13	4.705847e-13	UP
ENSG00000246695	LncEditing_250998	LGG	chr12_25949159_-	5.468658e+00	3.778929e+00	1.875436e+00	7.192094e+00	6.380527e-13	1.115013e-12	UP
ENSG00000246695	LncEditing_251008	LGG	chr12_25949527_-	4.582176e+00	3.614977e+00	2.923579e+00	7.822536e+00	5.176946e-15	1.056336e-14	UP
ENSG00000246695	LncEditing_251012	LGG	chr12_25949782_-	5.048567e+00	3.835810e+00	2.523069e+00	6.406173e+00	1.492176e-10	2.255838e-10	UP
ENSG00000246695	LncEditing_251022	LGG	chr12_25949804_-	5.094078e+00	3.747886e+00	2.258641e+00	7.603797e+00	2.875655e-14	5.562227e-14	UP
ENSG00000246695	LncEditing_251056	LGG	chr12_25950008_-	5.130556e+00	3.705599e+00	2.130342e+00	8.348578e+00	6.908959e-17	1.637140e-16	UP
ENSG00000246695	LncEditing_251080	LGG	chr12_25950376_-	5.057531e+00	3.819038e+00	2.467772e+00	5.961050e+00	2.506230e-09	3.567335e-09	UP
ENSG00000246695	LncEditing_251086	LGG	chr12_25950398_-	5.195827e+00	3.767023e+00	2.155505e+00	7.220462e+00	5.181124e-13	9.099189e-13	UP
ENSG00000246695	LncEditing_251092	LGG	chr12_25950415_-	5.030858e+00	3.762844e+00	2.386744e+00	7.166356e+00	7.702059e-13	1.336033e-12	UP
ENSG00000246695	LncEditing_251164	LGG	chr12_25952833_-	4.513917e+00	3.471608e+00	2.640083e+00	8.954683e+00	3.407120e-19	9.699300e-19	UP
ENSG00000246695	LncEditing_251175	LGG	chr12_25952866_-	4.570069e+00	3.895314e+00	4.338843e+00	4.068149e+00	4.738798e-05	5.422353e-05	UP
ENSG00000246695	LncEditing_251187	LGG	chr12_25952893_-	4.702965e+00	3.716070e+00	2.942967e+00	6.982788e+00	2.893781e-12	4.864308e-12	UP
ENSG00000246695	LncEditing_251193	LGG	chr12_25952914_-	4.871678e+00	3.765549e+00	2.691366e+00	6.803557e+00	1.020673e-11	1.656540e-11	UP
ENSG00000246695	LncEditing_251208	LGG	chr12_25952957_-	4.539880e+00	3.816510e+00	3.993607e+00	5.348955e+00	8.846339e-08	1.163038e-07	UP
ENSG00000246695	LncEditing_251274	LGG	chr12_25953597_-	5.245502e+00	3.812494e+00	2.172281e+00	6.512496e+00	7.391232e-11	1.141840e-10	UP
ENSG00000246695	LncEditing_251306	LGG	chr12_25953754_-	4.667821e+00	3.693425e+00	2.960417e+00	7.190551e+00	6.453014e-13	1.124896e-12	UP
ENSG00000246695	LncEditing_250944	ACC	chr12_25948761_-	7.699866e+00	4.449925e+00	1.264139e+00	3.024346e+00	2.491716e-03	3.752231e-03	UP
ENSG00000246695	LncEditing_251164	ACC	chr12_25952833_-	6.711300e+00	3.994952e+00	1.336159e+00	4.519855e+00	6.188195e-06	3.863848e-05	UP
ENSG00000246695	LncEditing_251175	ACC	chr12_25952866_-	7.471527e+00	4.562401e+00	1.405264e+00	3.174302e+00	1.501975e-03	2.485433e-03	UP
ENSG00000246695	LncEditing_251187	ACC	chr12_25952893_-	6.350398e+00	4.572635e+00	2.110500e+00	2.619790e+00	8.798381e-03	1.048304e-02	UP
ENSG00000246695	LncEditing_251193	ACC	chr12_25952914_-	7.802658e+00	4.530207e+00	1.274878e+00	2.932779e+00	3.359433e-03	4.804553e-03	UP
ENSG00000246695	LncEditing_251306	ACC	chr12_25953754_-	7.836358e+00	4.279959e+00	1.146018e+00	4.275254e+00	1.909193e-05	9.050990e-05	UP
ENSG00000246695	LncEditing_251164	SKCM	chr12_25952833_-	3.975293e+00	1.945984e+00	9.703446e-01	1.046378e+01	1.266926e-25	4.385512e-25	UP
ENSG00000246695	LncEditing_251164	KIRP	chr12_25952833_-	4.335424e+00	2.936355e+00	1.778895e+00	5.227009e+00	1.722744e-07	2.843794e-07	UP
ENSG00000246695	LncEditing_251164	THCA	chr12_25952833_-	2.163324e+00	1.409923e+00	1.619083e+00	7.901922e+00	2.746349e-15	7.080251e-15	UP
ENSG00000246695	LncEditing_251164	CHOL	chr12_25952833_-	3.327400e+00	1.906548e+00	1.244660e+00	2.466499e+00	1.364413e-02	1.933261e-02	UP

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID	LncRNA Index	Correlation	P-value	Adjc.p-value
ENSG00000246695	LncEditing_251164	-3.937697e-01	1.173427e-03	2.325422e-03
ENSG00000246695	LncEditing_251187	-5.173033e-01	1.014623e-04	4.226240e-04
ENSG00000246695	LncEditing_250916	-4.615213e-01	4.494747e-05	9.253891e-05
ENSG00000246695	LncEditing_250954	-3.192471e-01	1.647272e-02	1.663111e-02
ENSG00000246695	LncEditing_250968	-3.054919e-01	5.548688e-03	6.037433e-03
ENSG00000246695	LncEditing_251175	-3.113396e-01	2.192778e-02	2.192778e-02
ENSG00000246695	LncEditing_251306	-3.447361e-01	1.904152e-05	4.394196e-05
ENSG00000246695	LncEditing_251187	-6.054281e-01	4.839988e-02	4.839988e-02

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID	PC Gene ID	PC Gene Name	Positive correlated cancers	Cancer with PC gene up-regulation	Cancer with PC gene down-regulation
ENSG00000246695	ENSG00000003096	KLHL13	ACC,KICH,KIRC,TGCT,THYM		KIRC
ENSG00000246695	ENSG00000118965	WDR35	ACC,CHOL,KICH,KIRP,PAAD,THYM		KICH
ENSG00000246695	ENSG00000123094	RASSF8	ACC,BRCA,CHOL,GBM,KICH,KIRC,KIRP,LGG,LIHC,LUAD,MESO,OV,PAAD,PCPG,PRAD,SARC,SKCM,TGCT,THYM,UCS		KIRC
ENSG00000246695	ENSG00000128581	IFT22	ACC,CHOL,GBM,KICH,THCA,THYM		KICH
ENSG00000246695	ENSG00000139182	CLSTN3	ACC,CHOL,KICH,MESO,PAAD,TGCT		KICH
ENSG00000246695	ENSG00000139531	SUOX	ACC,KIRC,KIRP,MESO,PAAD,PCPG,TGCT,THCA,THYM		KIRC
ENSG00000246695	ENSG00000145687	SSBP2	ACC,CHOL,KICH,PAAD,TGCT		KICH
ENSG00000246695	ENSG00000160345	C9orf116	ACC,GBM,KICH,LGG,TGCT,THCA		KICH
ENSG00000246695	ENSG00000163629	PTPN13	ACC,CHOL,KICH,KIRC,OV,TGCT,THYM		KICH,KIRC
ENSG00000246695	ENSG00000164542	KIAA0895	ACC,CHOL,GBM,KICH,KIRC,KIRP		KICH
ENSG00000246695	ENSG00000182013	PNMA8A	ACC,KICH,KIRC,PAAD,THCA,THYM		KICH,KIRC
ENSG00000246695	ENSG00000186889	TMEM17	ACC,CHOL,GBM,KICH,LGG,MESO,PAAD,SARC,SKCM,THYM		KICH
ENSG00000246695	ENSG00000187391	MAGI2	ACC,KICH,KIRC,PAAD,TGCT,THCA		KIRC
ENSG00000246695	ENSG00000198088	NUP62CL	ACC,KICH,KIRC,PCPG,THCA		KICH
ENSG00000246695	ENSG00000198908	BHLHB9	ACC,KICH,KIRC,TGCT,THCA,THYM		KIRC
ENSG00000246695	ENSG00000132122	SPATA6	BRCA,CHOL,KICH,THCA,THYM,UCS		KICH
ENSG00000246695	ENSG00000063176	SPHK2	CHOL,KICH,KIRC,TGCT,THCA		KIRC
ENSG00000246695	ENSG00000101004	NINL	CHOL,KICH,KIRC,KIRP,MESO,PAAD,PCPG,PRAD,TGCT		KIRC
ENSG00000246695	ENSG00000105655	ISYNA1	CHOL,KICH,MESO,PAAD,TGCT,THYM		KICH
ENSG00000246695	ENSG00000108641	B9D1	CHOL,KICH,MESO,PAAD,TGCT,THCA		KICH
ENSG00000246695	ENSG00000110328	GALNT18	CHOL,KICH,PAAD,TGCT,THYM		KICH
ENSG00000246695	ENSG00000112981	NME5	CHOL,GBM,KICH,KIRP,PAAD,THCA		KICH
ENSG00000246695	ENSG00000114670	NEK11	CHOL,GBM,KICH,MESO,THCA		KICH
ENSG00000246695	ENSG00000129295	LRRC6	CHOL,GBM,KICH,KIRC,KIRP,THCA,THYM		KICH
ENSG00000246695	ENSG00000137819	PAQR5	CHOL,KICH,KIRC,TGCT,THYM		KIRC
ENSG00000246695	ENSG00000138036	DYNC2LI1	CHOL,GBM,KICH,KIRP,LGG,MESO,SKCM,TGCT,THCA,THYM		KICH
ENSG00000246695	ENSG00000138587	MNS1	CHOL,GBM,KICH,TGCT,THCA		KICH
ENSG00000246695	ENSG00000141736	ERBB2	CHOL,KICH,KIRC,MESO,TGCT		KIRC
ENSG00000246695	ENSG00000144283	PKP4	CHOL,KICH,KIRC,KIRP,TGCT,THYM		KICH
ENSG00000246695	ENSG00000145284	SCD5	CHOL,KICH,PAAD,TGCT,THYM		KICH
ENSG00000246695	ENSG00000152104	PTPN14	CHOL,KICH,MESO,TGCT,THYM		KICH
ENSG00000246695	ENSG00000152939	MARVELD2	CHOL,KICH,KIRC,THCA,THYM		KIRC
ENSG00000246695	ENSG00000158062	UBXN11	CHOL,GBM,KICH,KIRP,THCA		KICH
ENSG00000246695	ENSG00000163879	DNALI1	CHOL,GBM,KICH,PAAD,TGCT,THCA		KICH
ENSG00000246695	ENSG00000164050	PLXNB1	CHOL,KICH,KIRC,KIRP,MESO,TGCT,THYM		KICH,KIRC
ENSG00000246695	ENSG00000166578	IQCD	CHOL,GBM,KICH,KIRC,LGG		KICH
ENSG00000246695	ENSG00000170153	RNF150	CHOL,KICH,KIRC,PAAD,TGCT,THCA		KIRC
ENSG00000246695	ENSG00000178026	LRRC75B	CHOL,KICH,KIRP,THCA,THYM		KICH
ENSG00000246695	ENSG00000187535	IFT140	CHOL,KICH,MESO,TGCT,THCA,THYM		KICH
ENSG00000246695	ENSG00000188010	MORN2	CHOL,GBM,KICH,KIRC,KIRP,PAAD,THCA		KICH
ENSG00000246695	ENSG00000196659	TTC30B	CHOL,GBM,KICH,MESO,TGCT,THCA		KICH
ENSG00000246695	ENSG00000197557	TTC30A	CHOL,GBM,KICH,LGG,MESO,THCA,THYM		KICH
ENSG00000246695	ENSG00000205593	DENND6B	CHOL,KICH,KIRP,PAAD,THYM		KICH
ENSG00000246695	ENSG00000219626	FAM228B	CHOL,GBM,KICH,KIRP,PAAD,PCPG,TGCT,THYM		KICH
ENSG00000246695	ENSG00000032742	IFT88	GBM,KICH,KIRP,PAAD,THCA		KICH
ENSG00000246695	ENSG00000036672	USP2	GBM,KICH,KIRC,MESO,PAAD,THYM		KIRC
ENSG00000246695	ENSG00000066185	ZMYND12	GBM,KICH,KIRC,MESO,THCA,THYM		KICH,KIRC
ENSG00000246695	ENSG00000114698	PLSCR4	GBM,KICH,MESO,PAAD,THYM		KICH
ENSG00000246695	ENSG00000116885	OSCP1	GBM,KICH,MESO,PAAD,TGCT,THCA,THYM		KICH
ENSG00000246695	ENSG00000119636	BBOF1	GBM,KICH,KIRP,PAAD,THCA,THYM		KICH
ENSG00000246695	ENSG00000121310	ECHDC2	GBM,KICH,KIRP,MESO,PAAD,PCPG,PRAD,THCA,THYM		KICH
ENSG00000246695	ENSG00000123096	SSPN	GBM,KICH,LUAD,OV,TGCT,THYM,UCS		KICH
ENSG00000246695	ENSG00000145020	AMT	GBM,KICH,KIRC,KIRP,LGG,TGCT,THYM		KIRC
ENSG00000246695	ENSG00000058056	USP13	KICH,MESO,PAAD,TGCT,UCS		KICH
ENSG00000246695	ENSG00000072133	RPS6KA6	KICH,KIRC,TGCT,THCA,THYM		KIRC
ENSG00000246695	ENSG00000089220	PEBP1	KICH,KIRC,KIRP,MESO,PAAD,THCA		KIRC
ENSG00000246695	ENSG00000109339	MAPK10	KICH,KIRC,KIRP,PAAD,PCPG,THCA,THYM		KICH,KIRC
ENSG00000246695	ENSG00000124006	OBSL1	KICH,MESO,PAAD,TGCT,THCA,THYM		KICH
ENSG00000246695	ENSG00000127990	SGCE	KICH,PAAD,SKCM,TGCT,THYM		KICH
ENSG00000246695	ENSG00000132906	CASP9	KICH,KIRC,MESO,THCA,THYM		KICH
ENSG00000246695	ENSG00000137992	DBT	KICH,KIRC,MESO,THCA,THYM		KIRC
ENSG00000246695	ENSG00000143344	RGL1	KICH,MESO,PAAD,TGCT,THYM		KICH
ENSG00000246695	ENSG00000144040	SFXN5	KICH,KIRC,PAAD,SARC,SKCM,TGCT,THYM		KIRC
ENSG00000246695	ENSG00000145029	NICN1	KICH,KIRC,KIRP,PAAD,TGCT,THCA		KIRC
ENSG00000246695	ENSG00000147576	ADHFE1	KICH,KIRC,KIRP,THCA,THYM		KIRC
ENSG00000246695	ENSG00000162373	BEND5	KICH,PAAD,TGCT,THCA,THYM,UCS		KICH
ENSG00000246695	ENSG00000162869	PPP1R21	KICH,KIRC,MESO,PAAD,PRAD,THYM		KICH
ENSG00000246695	ENSG00000163541	SUCLG1	KICH,KIRC,MESO,TGCT,THCA		KIRC
ENSG00000246695	ENSG00000175198	PCCA	KICH,KIRC,MESO,TGCT,THCA,THYM		KIRC
ENSG00000246695	ENSG00000175662	TOM1L2	KICH,KIRC,KIRP,PAAD,THCA,THYM		KIRC
ENSG00000246695	ENSG00000182518	FAM104B	KICH,KIRC,LGG,PAAD,TGCT,THCA		KICH
ENSG00000246695	ENSG00000188153	COL4A5	KICH,KIRC,TGCT,THCA,THYM		KICH,KIRC
ENSG00000246695	ENSG00000204444	APOM	KICH,KIRC,KIRP,LGG,TGCT,THCA		KICH,KIRC

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID	TF ID	TF Name	PCgene ID	PCgene Name	Number of Cancer	Canaer Types
ENSG00000246695	ENSG00000166432	ZMAT1	ENSG00000111731	C2CD5	5	ACC,KIRP,PCPG,PRAD,THCA
ENSG00000246695	ENSG00000065029	ZNF76	ENSG00000101004	NINL	5	KICH,KIRP,MESO,PAAD,PCPG
ENSG00000246695	ENSG00000139154	AEBP2	ENSG00000123094	RASSF8	5	ACC,BRCA,CHOL,GBM,LGG
ENSG00000246695	ENSG00000166432	ZMAT1	ENSG00000139631	CSAD	5	KIRP,MESO,PCPG,PRAD,THCA

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID	LncRNA ENST ID	PC Gene Name	PC Gene ID	PC ENST ID	dG	nDG	Cancer with PC gene up-regulation	Cancer with PC gene Down-regulation
ENSG00000246695	ENST00000545729	TMEM131L	ENSG00000121210	ENST00000409663	-0.1583	81	KIRC,KICH	-
ENSG00000246695	ENST00000545729	TMEM131L	ENSG00000121210	ENST00000409959	-0.1583	81	KIRC,KICH	-
ENSG00000246695	ENST00000545729	TMEM131L	ENSG00000121210	ENST00000240487	-0.1583	81	KIRC,KICH	-
ENSG00000246695	ENST00000545729	TKT	ENSG00000163931	ENST00000423516	-0.2334	493	KICH	-
ENSG00000246695	ENST00000545729	TKT	ENSG00000163931	ENST00000296289	-0.2334	493	KICH	-
ENSG00000246695	ENST00000545729	ORAI1	ENSG00000276045	ENST00000616379	-0.1253	369	KICH	-
ENSG00000246695	ENST00000545729	SELPLG	ENSG00000110876	ENST00000388962	-0.1689	1	KIRC	-
ENSG00000246695	ENST00000545729	SELPLG	ENSG00000110876	ENST00000228463	-0.1689	1	KIRC	-
ENSG00000246695	ENST00000500276	TKT	ENSG00000163931	ENST00000423516	-0.2867	204	KICH	-
ENSG00000246695	ENST00000500276	TKT	ENSG00000163931	ENST00000296289	-0.2397	119	KICH	-
ENSG00000246695	ENST00000500276	TKT	ENSG00000163931	ENST00000472528	-0.1312	1766	KICH	-
ENSG00000246695	ENST00000500276	ORAI1	ENSG00000276045	ENST00000616379	-0.1320	1	KICH	-
ENSG00000246695	ENST00000500276	ORAI1	ENSG00000276045	ENST00000611718	-0.1104	1	KICH	-
ENSG00000246695	ENST00000500276	SELPLG	ENSG00000110876	ENST00000228463	-0.1300	129	KIRC	-
ENSG00000246695	ENST00000502069	TMEM131L	ENSG00000121210	ENST00000409663	-0.1583	20	KIRC,KICH	-
ENSG00000246695	ENST00000502069	TMEM131L	ENSG00000121210	ENST00000409959	-0.1583	20	KIRC,KICH	-
ENSG00000246695	ENST00000502069	TMEM131L	ENSG00000121210	ENST00000240487	-0.1583	20	KIRC,KICH	-
ENSG00000246695	ENST00000502069	TKT	ENSG00000163931	ENST00000423516	-0.1328	300	KICH	-
ENSG00000246695	ENST00000502069	TKT	ENSG00000163931	ENST00000296289	-0.2157	519	KICH	-
ENSG00000246695	ENST00000502069	SELPLG	ENSG00000110876	ENST00000228463	-0.1102	400	KIRC	-
ENSG00000246695	ENST00000545226	TMEM131L	ENSG00000121210	ENST00000409663	-0.1136	75	KIRC,KICH	-
ENSG00000246695	ENST00000545226	TMEM131L	ENSG00000121210	ENST00000409959	-0.1136	75	KIRC,KICH	-
ENSG00000246695	ENST00000545226	TMEM131L	ENSG00000121210	ENST00000240487	-0.1136	75	KIRC,KICH	-
ENSG00000246695	ENST00000545226	TKT	ENSG00000163931	ENST00000423516	-0.3402	48	KICH	-
ENSG00000246695	ENST00000545226	TKT	ENSG00000163931	ENST00000296289	-0.3458	48	KICH	-
ENSG00000246695	ENST00000545226	TKT	ENSG00000163931	ENST00000469678	-0.1208	1	KICH	-
ENSG00000246695	ENST00000545226	SELPLG	ENSG00000110876	ENST00000388962	-0.1483	1	KIRC	-
ENSG00000246695	ENST00000545226	SELPLG	ENSG00000110876	ENST00000228463	-0.1671	15	KIRC	-
ENSG00000246695	ENST00000546134	TKT	ENSG00000163931	ENST00000423516	-0.1444	646	KICH	-
ENSG00000246695	ENST00000546134	TKT	ENSG00000163931	ENST00000296289	-0.1444	646	KICH	-
ENSG00000246695	ENST00000542086	TMEM131L	ENSG00000121210	ENST00000409663	-0.1583	95	KIRC,KICH	-
ENSG00000246695	ENST00000542086	TMEM131L	ENSG00000121210	ENST00000409959	-0.1583	95	KIRC,KICH	-
ENSG00000246695	ENST00000542086	TMEM131L	ENSG00000121210	ENST00000240487	-0.1583	95	KIRC,KICH	-
ENSG00000246695	ENST00000542086	TKT	ENSG00000163931	ENST00000423516	-0.2080	71	KICH	-
ENSG00000246695	ENST00000542086	TKT	ENSG00000163931	ENST00000296289	-0.3952	1	KICH	-
ENSG00000246695	ENST00000542086	ORAI1	ENSG00000276045	ENST00000616379	-0.1133	1	KICH	-
ENSG00000246695	ENST00000542086	SELPLG	ENSG00000110876	ENST00000388962	-0.1127	1	KIRC	-
ENSG00000246695	ENST00000542086	SELPLG	ENSG00000110876	ENST00000228463	-0.1127	2	KIRC	-
ENSG00000246695	ENST00000535436	TKT	ENSG00000163931	ENST00000423516	-0.1328	684	KICH	-
ENSG00000246695	ENST00000535436	TKT	ENSG00000163931	ENST00000296289	-0.1415	694	KICH	-
ENSG00000246695	ENST00000535436	SELPLG	ENSG00000110876	ENST00000228463	-0.1689	217	KIRC	-
ENSG00000246695	ENST00000500102	TKT	ENSG00000163931	ENST00000423516	-0.1328	374	KICH	-
ENSG00000246695	ENST00000500102	TKT	ENSG00000163931	ENST00000296289	-0.1415	384	KICH	-
ENSG00000246695	ENST00000537801	TMEM131L	ENSG00000121210	ENST00000409663	-0.1136	98	KIRC,KICH	-
ENSG00000246695	ENST00000537801	TMEM131L	ENSG00000121210	ENST00000409959	-0.1136	98	KIRC,KICH	-
ENSG00000246695	ENST00000537801	TMEM131L	ENSG00000121210	ENST00000240487	-0.1136	98	KIRC,KICH	-
ENSG00000246695	ENST00000537801	TKT	ENSG00000163931	ENST00000423516	-0.3402	71	KICH	-
ENSG00000246695	ENST00000537801	TKT	ENSG00000163931	ENST00000296289	-0.3458	71	KICH	-
ENSG00000246695	ENST00000537801	TKT	ENSG00000163931	ENST00000469678	-0.1295	1	KICH	-
ENSG00000246695	ENST00000537801	SELPLG	ENSG00000110876	ENST00000228463	-0.1671	38	KIRC	-

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000246695.6	ENST00000545729.4	84	26	280
ENSG00000246695.6	ENST00000500276.5	69	208	2
ENSG00000246695.6	ENST00000502069.5	172	553	35
ENSG00000246695.6	ENST00000545226.4	69	382	591
ENSG00000246695.6	ENST00000546134.4	61	264	449
ENSG00000246695.6	ENST00000542086.4	67	221	18
ENSG00000246695.6	ENST00000535436.4	61	284	469
ENSG00000246695.6	ENST00000500102.5	103	531	220
ENSG00000246695.6	ENST00000537801.1	61	283	468

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential