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lncRNA: ENSG00000245694

Summary for CRNDE

Gene summary

Gene information	Ensembl ID	ENSG00000245694
	Gene symbol	CRNDE
	Gene name	colorectal neoplasia differentially expressed
	HGNC	37078
	Entrez ID	101927480
	Gene type	lincRNA
	Synonyms	16q12.2\|CRNDE
	UniProtAcc

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Structure and expression level for CRNDE

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000245694	4.668237e+02	4.732141e+00	5.026872e-01	9.413689e+00	4.790000e-21	5.190000e-19	UP	GBM
ENSG00000245694	1.559162e+02	3.504270e+00	4.567371e-01	7.672399e+00	1.690000e-14	3.900000e-13	UP	CHOL
ENSG00000245694	7.402038e+02	1.296979e+00	1.245669e-01	1.041191e+01	2.190000e-25	1.770000e-24	UP	KIRC
ENSG00000245694	1.936836e+02	-1.703352e+00	3.137278e-01	-5.429396e+00	5.650000e-08	2.550000e-07	DOWN	KICH
ENSG00000245694	1.011205e+03	2.785835e+00	5.873757e-01	4.742849e+00	2.110000e-06	4.720000e-05	UP	CESC
ENSG00000245694	1.196695e+03	2.354170e+00	2.189673e-01	1.075124e+01	5.850000e-27	2.840000e-25	UP	KIRP
ENSG00000245694	3.275393e+02	2.355609e+00	6.324097e-01	3.724815e+00	1.954590e-04	3.146085e-03	UP	PCPG
ENSG00000245694	7.890071e+02	1.134507e+00	1.115423e-01	1.017109e+01	2.670000e-24	1.190000e-22	UP	PRAD
ENSG00000245694	1.410418e+02	4.790271e+00	2.194177e-01	2.183175e+01	1.160000e-105	1.110000e-102	UP	COAD
ENSG00000245694	1.474706e+02	3.378916e+00	2.484042e-01	1.360249e+01	3.870000e-42	4.760000e-40	UP	LIHC
ENSG00000245694	1.641028e+02	4.040345e+00	4.153410e-01	9.727777e+00	2.300000e-22	7.540000e-20	UP	READ

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000245694	5.176769e-01	2.706560e-04	CHOL	6.202226e-04
ENSG00000245694	-3.896712e-01	1.603095e-04	KICH	2.579032e-04
ENSG00000245694	3.471416e-01	9.033209e-13	LIHC	5.697081e-12
ENSG00000245694	3.418553e-01	1.502381e-16	PRAD	1.639264e-15

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lncRNA-Protein interaction for CRNDE

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000245694	ENST00000560912	CRNDE	ENSG00000154832	CXXC1	32.67	94.1049	Q9P0U4	TF,Epi	Predict
ENSG00000245694	ENST00000558031	CRNDE	ENSG00000143033	MTF2	1.86	90.6892	Q9Y483	TF,Epi	Predict
ENSG00000245694	ENST00000558031	CRNDE	ENSG00000116560	SFPQ	40.61	91.9765	P23246	RBP,Epi	Predict,RNA-seq,Microarray
ENSG00000245694	ENST00000560912	CRNDE	ENSG00000116560	SFPQ	28.07	90.9937	P23246	RBP,Epi	Predict,RNA-seq,Microarray
ENSG00000245694	ENST00000560912	CRNDE	ENSG00000134046	MBD2	13.91	91.2332	Q9UBB5	TF,Epi	NA

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000245694	ENST00000558031	CRNDE	ENSG00000130254	SAFB2	74.68	91.7825	Q14151	TF,RBP	ENCODE,eCLIP,catRAPID
ENSG00000245694	ENST00000560912	CRNDE	ENSG00000167967	E4F1	57.27	92.2157	Q66K89	TF	NA
ENSG00000245694	ENST00000560912	CRNDE	ENSG00000130254	SAFB2	55.0	93.6113	Q14151	TF,RBP	ENCODE,eCLIP,catRAPID
ENSG00000245694	ENST00000560912	CRNDE	ENSG00000099326	MZF1	50.3	91.6696	P28698	TF	NA
ENSG00000245694	ENST00000560912	CRNDE	ENSG00000105127	AKAP8	49.43	94.5919	O43823	TF	NA
ENSG00000245694	ENST00000560912	CRNDE	ENSG00000125482	TTF1	45.46	92.2823	Q15361	TF	Predict
ENSG00000245694	ENST00000558031	CRNDE	ENSG00000147789	ZNF7	41.08	90.7769	P17097	TF	RNA-seq,Microarray
ENSG00000245694	ENST00000558031	CRNDE	ENSG00000198040	ZNF84	39.99	91.2592	P51523	TF	NA
ENSG00000245694	ENST00000560912	CRNDE	ENSG00000196670	ZFP62	33.06	92.8513	Q8NB50	TF	NA
ENSG00000245694	ENST00000560912	CRNDE	ENSG00000154832	CXXC1	32.67	93.6176	Q9P0U4	TF,Epi	Predict
ENSG00000245694	ENST00000558031	CRNDE	ENSG00000168795	ZBTB5	32.52	90.8308	O15062	TF	Predict
ENSG00000245694	ENST00000560912	CRNDE	ENSG00000147789	ZNF7	29.04	93.0931	P17097	TF	RNA-seq,Microarray
ENSG00000245694	ENST00000560912	CRNDE	ENSG00000198040	ZNF84	28.8	93.405	P51523	TF	NA
ENSG00000245694	ENST00000560912	CRNDE	ENSG00000146587	RBAK	27.46	93.3827	Q9NYW8	TF	Predict
ENSG00000245694	ENST00000560912	CRNDE	ENSG00000065029	ZNF76	25.23	92.4941	P36508	TF	Predict
ENSG00000245694	ENST00000560912	CRNDE	ENSG00000168795	ZBTB5	22.29	94.2373	O15062	TF	Predict
ENSG00000245694	ENST00000560912	CRNDE	ENSG00000166526	ZNF3	21.51	91.6795	P17036	TF	NA
ENSG00000245694	ENST00000560912	CRNDE	ENSG00000062194	GPBP1	16.38	91.6295	Q86WP2	TF	Predict
ENSG00000245694	ENST00000558031	CRNDE	ENSG00000043355	ZIC2	15.56	90.0528	O95409	TF	NA
ENSG00000245694	ENST00000560912	CRNDE	ENSG00000134046	MBD2	13.91	90.6602	Q9UBB5	TF,Epi	NA
ENSG00000245694	ENST00000560912	CRNDE	ENSG00000043355	ZIC2	11.72	93.5191	O95409	TF	NA
ENSG00000245694	ENST00000560912	CRNDE	ENSG00000109381	ELF2	11.59	91.5994	Q15723	TF	RNA-seq,Microarray
ENSG00000245694	ENST00000560912	CRNDE	ENSG00000177508	IRX3	9.33	93.4057	P78415	TF	Predict
ENSG00000245694	ENST00000560912	CRNDE	ENSG00000180035	ZNF48	8.44	90.9944	Q96MX3	TF	NA
ENSG00000245694	ENST00000560912	CRNDE	ENSG00000144161	ZC3H8	8.28	91.2752	Q8N5P1	TF,RBP	NA
ENSG00000245694	ENST00000558031	CRNDE	ENSG00000180035	ZNF48	7.08	90.9129	Q96MX3	TF	NA
ENSG00000245694	ENST00000560912	CRNDE	ENSG00000167766	ZNF83	7.08	91.2225	P51522	TF	NA
ENSG00000245694	ENST00000560912	CRNDE	ENSG00000176842	IRX5	6.47	93.7348	P78411	TF	Predict
ENSG00000245694	ENST00000560912	CRNDE	ENSG00000187815	ZFP69	5.51	90.918	Q49AA0	TF	NA
ENSG00000245694	ENST00000560912	CRNDE	ENSG00000154957	ZNF18	3.27	90.4281	P17022	TF	NA
ENSG00000245694	ENST00000557792	CRNDE	ENSG00000111206	FOXM1	19.69	92.3219	Q08050	TF	RNA-seq,Microarray
ENSG00000245694	ENST00000557792	CRNDE	ENSG00000141258	SGSM2	15.09	92.9451	O43147	TF	Predict

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000245694	ENST00000557792	CRNDE	ENSG00000176102	CSTF3	9.39	90.3254	Q12996	RBP	NA
ENSG00000245694	ENST00000557792	CRNDE	ENSG00000118197	DDX59	1.07	90.6795	Q5T1V6	RBP	NA
ENSG00000245694	ENST00000558031	CRNDE	ENSG00000013573	DDX11	79.48	91.7201	Q96FC9	RBP	Predict
ENSG00000245694	ENST00000558031	CRNDE	ENSG00000130254	SAFB2	74.68	93.8552	Q14151	TF,RBP	ENCODE,eCLIP,catRAPID
ENSG00000245694	ENST00000558031	CRNDE	ENSG00000004534	RBM6	73.42	93.6476	P78332	RBP	CLIP-seq,catRAPID,High-throughput data combine LncPro prediction
ENSG00000245694	ENST00000560912	CRNDE	ENSG00000130254	SAFB2	55.0	93.2857	Q14151	TF,RBP	ENCODE,eCLIP,catRAPID
ENSG00000245694	ENST00000560912	CRNDE	ENSG00000004534	RBM6	54.23	93.9622	P78332	RBP	CLIP-seq,catRAPID,High-throughput data combine LncPro prediction
ENSG00000245694	ENST00000558031	CRNDE	ENSG00000116560	SFPQ	40.61	91.9872	P23246	RBP,Epi	Predict,RNA-seq,Microarray
ENSG00000245694	ENST00000560912	CRNDE	ENSG00000100650	SRSF5	37.57	90.5977	Q13243	RBP	NA
ENSG00000245694	ENST00000558031	CRNDE	ENSG00000129351	ILF3	34.85	91.9858	Q12906	RBP	ENCODE,eCLIP
ENSG00000245694	ENST00000560912	CRNDE	ENSG00000124193	SRSF6	21.52	91.7425	Q13247	RBP	NA
ENSG00000245694	ENST00000560912	CRNDE	ENSG00000150316	CWC15	18.51	91.319	Q9P013	RBP	NA
ENSG00000245694	ENST00000560912	CRNDE	ENSG00000134597	RBMX2	17.86	90.572	Q9Y388	RBP	NA
ENSG00000245694	ENST00000560912	CRNDE	ENSG00000116350	SRSF4	13.53	91.1401	Q08170	RBP	NA
ENSG00000245694	ENST00000560912	CRNDE	ENSG00000089280	FUS	11.25	91.917	P35637	RBP	CLIP-seq,High-throughput data,PAR-CLIP
ENSG00000245694	ENST00000560912	CRNDE	ENSG00000101361	NOP56	10.43	90.0092	O00567	RBP	PAR-CLIP,catRAPID
ENSG00000245694	ENST00000560912	CRNDE	ENSG00000147274	RBMX	8.61	90.4242	P38159	RBP	RNA-seq,Microarray
ENSG00000245694	ENST00000560912	CRNDE	ENSG00000144161	ZC3H8	8.28	91.051	Q8N5P1	TF,RBP	NA
ENSG00000245694	ENST00000560912	CRNDE	ENSG00000121390	PSPC1	8.23	93.0001	Q8WXF1	RBP	Predict,RNA-seq,Microarray
ENSG00000245694	ENST00000560912	CRNDE	ENSG00000204356	NELFE	6.56	91.3111	P18615	RBP	NA
ENSG00000245694	ENST00000558031	CRNDE	ENSG00000147274	RBMX	3.72	90.8585	P38159	RBP	RNA-seq,Microarray
ENSG00000245694	ENST00000560912	CRNDE	ENSG00000161547	SRSF2	3.33	90.5687	Q01130	RBP	NA

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lncRNA-DNA interaction for CRNDE

lncRNA targets the enhancer region and positively regulates the gene expression.

lncRNA targets the promoter region and positively regulates the gene expression.

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for CRNDE

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

NACC2,FOXN3

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

ORF mutation

-lncRNA and exonskipping events are negatively correlated.

lncRNA and exonskipping events negative correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	LOF
ENSG00000245694	ENST00000557792	exon_skip_370518	chr22:50247691-50247776	-18.03	-0.2956	HDAC10	ENST00000216271	Frame-shift
ENSG00000245694	ENST00000557792	exon_skip_374552	chr3:50104247-50104308	-8.80	-0.1760	RBM5	ENST00000347869	Frame-shift
ENSG00000245694	ENST00000557792	exon_skip_111863	chr14:23565815-23565892	-18.07	-0.2780	AP1G2	ENST00000308724,ENST00000397120	Frame-shift
ENSG00000245694	ENST00000557792	exon_skip_382458	chr3:38131595-38131638	-7.98	-1.1400	ACAA1	ENST00000333167	Frame-shift
ENSG00000245694	ENST00000557792	exon_skip_466113	chr7:48099669-48099787	-12.13	-0.1225	UPP1	ENST00000331803,ENST00000395564	Frame-shift
ENSG00000245694	ENST00000557792	exon_skip_153767	chr17:48057031-48057121	-28.72	-0.3301	NFE2L1	ENST00000362042	In-frame
ENSG00000245694	ENST00000557792	exon_skip_80403	chr12:15883540-15883676	-17.30	-0.1373	STRAP	ENST00000419869	Frame-shift

lncRNA targets by miRNA.

LncRNA Ensembl ID	miRNA ID	LncRNA ENST ID	Binding site in lncRNA	Score	Energy	Align Len	Public source
ENSG00000245694	hsa-mir-22	ENST00000501177	chr16:54919287-54919372	197.00	-73.08	88	NA
ENSG00000245694	hsa-mir-22	ENST00000501177	chr16:54918883-54918971	175.00	-77.60	84	NA
ENSG00000245694	hsa-mir-22	ENST00000501177	chr16:54919047-54919138	172.00	-63.60	89	NA
ENSG00000245694	hsa-mir-22	ENST00000501177	chr16:54919398-54919474	172.00	-59.23	81	NA
ENSG00000245694	hsa-mir-22	ENST00000501177	chr16:54919197-54919279	153.00	-64.52	83	NA
ENSG00000245694	hsa-mir-22	ENST00000559598	chr16:54919371-54919456	197.00	-73.08	88	NA
ENSG00000245694	hsa-mir-22	ENST00000559598	chr16:54918884-54918972	175.00	-77.60	84	NA
ENSG00000245694	hsa-mir-22	ENST00000559598	chr16:54919482-54919558	172.00	-59.23	81	NA
ENSG00000245694	hsa-mir-22	ENST00000559598	chr16:54919031-54919118	156.00	-70.74	87	NA
ENSG00000245694	hsa-mir-22	ENST00000559598	chr16:54919281-54919363	153.00	-64.52	83	NA
ENSG00000245694	hsa-mir-22	ENST00000560029	chr16:54919346-54919431	197.00	-73.08	88	NA
ENSG00000245694	hsa-mir-22	ENST00000560029	chr16:54919256-54919338	153.00	-64.52	83	NA
ENSG00000245694	hsa-mir-22	ENST00000560029	chr16:54919457-54919529	152.00	-59.23	80	NA
ENSG00000245694	hsa-mir-22	ENST00000502066	chr16:54919346-54919431	197.00	-73.08	88	NA
ENSG00000245694	hsa-mir-22	ENST00000502066	chr16:54919006-54919093	156.00	-70.74	87	NA
ENSG00000245694	hsa-mir-22	ENST00000502066	chr16:54919256-54919338	153.00	-64.52	83	NA
ENSG00000245694	hsa-mir-22	ENST00000502066	chr16:54919457-54919529	152.00	-59.23	80	NA
ENSG00000245694	hsa-mir-22	ENST00000502066	chr16:54918891-54918972	146.00	-73.98	84	NA
ENSG00000245694	hsa-mir-22	ENST00000558031	chr16:54919179-54919266	159.00	-73.41	86	NA
ENSG00000245694	hsa-mir-22	ENST00000558031	chr16:54919429-54919511	153.00	-64.52	83	NA
ENSG00000245694	hsa-mir-22	ENST00000559432	chr16:54919251-54919339	175.00	-77.60	84	NA
ENSG00000245694	hsa-mir-22	ENST00000559432	chr16:54919415-54919517	155.00	-71.48	99	NA
ENSG00000245694	hsa-mir-22	ENST00000559432	chr16:54919112-54919192	146.00	-94.16	82	NA
ENSG00000245694	hsa-mir-22	ENST00000559432	chr16:54919507-54919592	145.00	-72.84	81	NA
ENSG00000245694	hsa-mir-22	ENST00000560912	chr16:54919412-54919499	164.00	-77.31	87	NA
ENSG00000245694	hsa-mir-22	ENST00000560912	chr16:54919210-54919291	146.00	-73.98	84	NA
ENSG00000245694	hsa-mir-22	ENST00000558952	chr16:54923676-54923785	174.00	-77.01	107	NA
ENSG00000245694	hsa-mir-22	ENST00000558952	chr16:54923293-54923379	156.00	-96.93	85	NA
ENSG00000245694	hsa-mir-22	ENST00000558952	chr16:54923570-54923654	150.00	-65.03	88	NA
ENSG00000245694	hsa-mir-22	ENST00000558952	chr16:54923392-54923473	146.00	-73.98	84	NA
ENSG00000245694	hsa-mir-22	ENST00000560208	chr16:54924959-54925046	159.00	-97.25	89	NA
ENSG00000245694	hsa-mir-22	ENST00000560208	chr16:54925134-54925220	156.00	-96.93	85	NA
ENSG00000245694	hsa-mir-22	ENST00000560208	chr16:54924878-54924965	151.00	-95.44	92	NA
ENSG00000245694	hsa-mir-22	ENST00000560208	chr16:54925376-54925453	150.00	-63.70	78	NA
ENSG00000245694	hsa-mir-22	ENST00000560208	chr16:54925233-54925314	146.00	-73.98	84	NA
ENSG00000245694	hsa-mir-22	ENST00000557792	chr16:54925178-54925272	164.00	-99.97	92	NA
ENSG00000245694	hsa-mir-22	ENST00000557792	chr16:54925293-54925380	159.00	-97.25	89	NA
ENSG00000245694	hsa-mir-22	ENST00000557792	chr16:54925468-54925554	156.00	-96.93	85	NA
ENSG00000245694	hsa-mir-139	ENST00000501177	chr16:54918876-54918950	178.00	-71.83	74	NA
ENSG00000245694	hsa-mir-139	ENST00000501177	chr16:54919008-54919081	162.00	-57.65	68	NA
ENSG00000245694	hsa-mir-139	ENST00000559598	chr16:54918877-54918951	178.00	-71.83	74	NA
ENSG00000245694	hsa-mir-139	ENST00000559598	chr16:54919009-54919082	162.00	-57.65	68	NA
ENSG00000245694	hsa-mir-139	ENST00000559598	chr16:54919116-54919191	155.00	-56.52	71	NA
ENSG00000245694	hsa-mir-139	ENST00000560029	chr16:54919091-54919166	155.00	-56.52	71	NA
ENSG00000245694	hsa-mir-139	ENST00000502066	chr16:54918984-54919057	162.00	-57.65	68	NA
ENSG00000245694	hsa-mir-139	ENST00000502066	chr16:54919091-54919166	155.00	-56.52	71	NA
ENSG00000245694	hsa-mir-139	ENST00000502066	chr16:54918871-54918926	151.00	-59.46	56	NA
ENSG00000245694	hsa-mir-139	ENST00000558031	chr16:54919264-54919339	155.00	-56.52	71	NA
ENSG00000245694	hsa-mir-139	ENST00000559432	chr16:54919244-54919318	178.00	-71.83	74	NA
ENSG00000245694	hsa-mir-139	ENST00000559432	chr16:54919376-54919449	162.00	-57.65	68	NA
ENSG00000245694	hsa-mir-139	ENST00000560912	chr16:54919174-54919245	169.00	-71.46	66	NA
ENSG00000245694	hsa-mir-139	ENST00000560912	chr16:54919303-54919369	165.00	-50.42	65	NA
ENSG00000245694	hsa-mir-139	ENST00000560912	chr16:54919497-54919572	155.00	-56.52	71	NA
ENSG00000245694	hsa-mir-139	ENST00000560912	chr16:54919387-54919463	142.00	-57.07	70	NA
ENSG00000245694	hsa-mir-139	ENST00000558952	chr16:54923346-54923427	170.00	-73.07	75	NA
ENSG00000245694	hsa-mir-139	ENST00000558952	chr16:54923485-54923558	162.00	-57.65	68	NA
ENSG00000245694	hsa-mir-139	ENST00000558952	chr16:54923534-54923606	145.00	-54.62	46	NA
ENSG00000245694	hsa-mir-139	ENST00000558952	chr16:54923741-54923816	143.00	-55.22	71	NA
ENSG00000245694	hsa-mir-139	ENST00000560208	chr16:54925187-54925268	170.00	-73.07	75	NA
ENSG00000245694	hsa-mir-139	ENST00000560208	chr16:54924892-54924961	145.00	-71.38	67	NA
ENSG00000245694	hsa-mir-139	ENST00000557792	chr16:54925521-54925602	170.00	-73.07	75	NA
ENSG00000245694	hsa-mir-139	ENST00000557792	chr16:54925226-54925295	145.00	-71.38	67	NA

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Variants for CRNDE

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID

PC Gene ID

PC Gene Name

Positive correlated cancers

Cancer with PC gene up-regulation

Cancer with PC gene down-regulation

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID

LncRNA ENST ID

PC Gene Name

PC Gene ID

PC ENST ID

nDG

Cancer with PC gene up-regulation

Cancer with PC gene Down-regulation

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID	lncRNA-miRNA-mRNA	Cancer Types
ENSG00000245694	CRNDE,hsa-mir-139,PLP2	CHOL,LGG,UVM,PAAD,KIRP
ENSG00000245694	CRNDE,hsa-mir-139,CBX3	CHOL,LGG,PRAD,PAAD,KIRP
ENSG00000245694	CRNDE,hsa-mir-22,PPIH	KICH,CHOL,ACC,UCS,KIRP
ENSG00000245694	CRNDE,hsa-mir-22,WDR33	KICH,CHOL,ACC,UCS,KIRP
ENSG00000245694	CRNDE,hsa-mir-22,RXRB	KICH,CHOL,ACC,UCS,KIRP
ENSG00000245694	CRNDE,hsa-mir-22,C1orf35	KICH,CHOL,ACC,UCS,KIRP
ENSG00000245694	CRNDE,hsa-mir-22,CERS5	KICH,CHOL,ACC,UCS,KIRP
ENSG00000245694	CRNDE,hsa-mir-22,ATAT1	KICH,CHOL,ACC,UCS,KIRP
ENSG00000245694	CRNDE,hsa-mir-22,RBM8A	KICH,CHOL,ACC,UCS,KIRP
ENSG00000245694	CRNDE,hsa-mir-22,RING1	KICH,CHOL,ACC,UCS,KIRP
ENSG00000245694	CRNDE,hsa-mir-22,ILKAP	KICH,CHOL,ACC,UCS,KIRP
ENSG00000245694	CRNDE,hsa-mir-22,RCE1	KICH,CHOL,ACC,UCS,KIRP
ENSG00000245694	CRNDE,hsa-mir-22,EHMT2	KICH,CHOL,ACC,UCS,KIRP
ENSG00000245694	CRNDE,hsa-mir-22,ERCC3	KICH,CHOL,ACC,UCS,KIRP
ENSG00000245694	CRNDE,hsa-mir-22,POLR2H	KICH,CHOL,ACC,UCS,KIRP
ENSG00000245694	CRNDE,hsa-mir-22,IFT43	KICH,CHOL,ACC,UCS,KIRP
ENSG00000245694	CRNDE,hsa-mir-22,ING5	KICH,CHOL,ACC,UCS,KIRP
ENSG00000245694	CRNDE,hsa-mir-22,SAP30BP	KICH,CHOL,ACC,UCS,KIRP
ENSG00000245694	CRNDE,hsa-mir-22,CLK2	KICH,CHOL,ACC,UCS,KIRP
ENSG00000245694	CRNDE,hsa-mir-22,PRPF38A	KICH,CHOL,ACC,UCS,KIRP
ENSG00000245694	CRNDE,hsa-mir-22,SMPD4	KICH,CHOL,ACC,UCS,KIRP
ENSG00000245694	CRNDE,hsa-mir-22,PTMA	KICH,CHOL,ACC,UCS,KIRP
ENSG00000245694	CRNDE,hsa-mir-22,STMN1	KICH,CHOL,ACC,UCS,KIRP
ENSG00000245694	CRNDE,hsa-mir-22,SF3A3	KICH,CHOL,ACC,UCS,KIRP
ENSG00000245694	CRNDE,hsa-mir-22,RBMX	KICH,CHOL,ACC,UCS,KIRP
ENSG00000245694	CRNDE,hsa-mir-22,H3-3B	KICH,CHOL,ACC,UCS,KIRP
ENSG00000245694	CRNDE,hsa-mir-22,ATG4B	KICH,CHOL,ACC,UCS,KIRP
ENSG00000245694	CRNDE,hsa-mir-22,ARL16	KICH,CHOL,ACC,UCS,KIRP
ENSG00000245694	CRNDE,hsa-mir-22,COPS7B	KICH,CHOL,ACC,UCS,KIRP
ENSG00000245694	CRNDE,hsa-mir-22,INTS11	KICH,CHOL,ACC,UCS,KIRP
ENSG00000245694	CRNDE,hsa-mir-22,SUMO2	KICH,CHOL,ACC,UCS,KIRP
ENSG00000245694	CRNDE,hsa-mir-22,C14orf93	KICH,CHOL,ACC,UCS,KIRP
ENSG00000245694	CRNDE,hsa-mir-22,RBM14	KICH,CHOL,ACC,UCS,KIRP
ENSG00000245694	CRNDE,hsa-mir-22,ABI2	KICH,CHOL,ACC,UCS,KIRP
ENSG00000245694	CRNDE,hsa-mir-22,UBXN11	KICH,CHOL,ACC,UCS,KIRP
ENSG00000245694	CRNDE,hsa-mir-22,IRF3	KICH,CHOL,ACC,UCS,KIRP
ENSG00000245694	CRNDE,hsa-mir-22,NUP85	KICH,CHOL,ACC,UCS,KIRP
ENSG00000245694	CRNDE,hsa-mir-22,IQCB1	KICH,CHOL,ACC,UCS,KIRP
ENSG00000245694	CRNDE,hsa-mir-22,MUTYH	KICH,CHOL,ACC,UCS,KIRP
ENSG00000245694	CRNDE,hsa-mir-22,C11orf49	KICH,CHOL,ACC,UCS,KIRP
ENSG00000245694	CRNDE,hsa-mir-22,SRRT	KICH,CHOL,ACC,UCS,KIRP
ENSG00000245694	CRNDE,hsa-mir-22,PMF1	KICH,CHOL,ACC,UCS,KIRP
ENSG00000245694	CRNDE,hsa-mir-22,LRIG2	KICH,CHOL,ACC,UCS,KIRP
ENSG00000245694	CRNDE,hsa-mir-22,CCHCR1	KICH,CHOL,ACC,UCS,KIRP

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000245694.7	ENST00000501177.6	93	468	749
ENSG00000245694.7	ENST00000559598.5	84	135	389
ENSG00000245694.7	ENST00000560029.4	60	179	0
ENSG00000245694.7	ENST00000502066.5	50	335	487
ENSG00000245694.7	ENST00000558031.4	50	335	487
ENSG00000245694.7	ENST00000559432.4	46	324	461
ENSG00000245694.7	ENST00000560912.4	67	265	62
ENSG00000245694.7	ENST00000558952.1	67	120	323
ENSG00000245694.7	ENST00000560208.1	79	238	2
ENSG00000245694.7	ENST00000557792.1	116	36	386

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential