lncRNA targets the enhancer region and positively regulates the gene expression. |
lncRNA targets the promoter region and positively regulates the gene expression. |
lncRNA targets the promoter region and negatively regulates the gene expression. |
lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
Only predicted by lncTar | NACC2,FOXN3 | Exist in public source | NA |
lncRNA targets the skipped exon region. | -lncRNA and exonskipping events are positively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
-lncRNA and exonskipping events are negatively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | ENSG00000245694 | ENST00000557792 | exon_skip_370518 | chr22:50247691-50247776 | -18.03 | -0.2956 | HDAC10 | ENST00000216271 | Frame-shift | ENSG00000245694 | ENST00000557792 | exon_skip_374552 | chr3:50104247-50104308 | -8.80 | -0.1760 | RBM5 | ENST00000347869 | Frame-shift | ENSG00000245694 | ENST00000557792 | exon_skip_111863 | chr14:23565815-23565892 | -18.07 | -0.2780 | AP1G2 | ENST00000308724,ENST00000397120 | Frame-shift | ENSG00000245694 | ENST00000557792 | exon_skip_382458 | chr3:38131595-38131638 | -7.98 | -1.1400 | ACAA1 | ENST00000333167 | Frame-shift | ENSG00000245694 | ENST00000557792 | exon_skip_466113 | chr7:48099669-48099787 | -12.13 | -0.1225 | UPP1 | ENST00000331803,ENST00000395564 | Frame-shift | ENSG00000245694 | ENST00000557792 | exon_skip_153767 | chr17:48057031-48057121 | -28.72 | -0.3301 | NFE2L1 | ENST00000362042 | In-frame | ENSG00000245694 | ENST00000557792 | exon_skip_80403 | chr12:15883540-15883676 | -17.30 | -0.1373 | STRAP | ENST00000419869 | Frame-shift |
lncRNA targets by miRNA. |
 |
LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source | ENSG00000245694 | hsa-mir-22 | ENST00000501177 | chr16:54919287-54919372 | 197.00 | -73.08 | 88 | NA | ENSG00000245694 | hsa-mir-22 | ENST00000501177 | chr16:54918883-54918971 | 175.00 | -77.60 | 84 | NA | ENSG00000245694 | hsa-mir-22 | ENST00000501177 | chr16:54919047-54919138 | 172.00 | -63.60 | 89 | NA | ENSG00000245694 | hsa-mir-22 | ENST00000501177 | chr16:54919398-54919474 | 172.00 | -59.23 | 81 | NA | ENSG00000245694 | hsa-mir-22 | ENST00000501177 | chr16:54919197-54919279 | 153.00 | -64.52 | 83 | NA | ENSG00000245694 | hsa-mir-22 | ENST00000559598 | chr16:54919371-54919456 | 197.00 | -73.08 | 88 | NA | ENSG00000245694 | hsa-mir-22 | ENST00000559598 | chr16:54918884-54918972 | 175.00 | -77.60 | 84 | NA | ENSG00000245694 | hsa-mir-22 | ENST00000559598 | chr16:54919482-54919558 | 172.00 | -59.23 | 81 | NA | ENSG00000245694 | hsa-mir-22 | ENST00000559598 | chr16:54919031-54919118 | 156.00 | -70.74 | 87 | NA | ENSG00000245694 | hsa-mir-22 | ENST00000559598 | chr16:54919281-54919363 | 153.00 | -64.52 | 83 | NA | ENSG00000245694 | hsa-mir-22 | ENST00000560029 | chr16:54919346-54919431 | 197.00 | -73.08 | 88 | NA | ENSG00000245694 | hsa-mir-22 | ENST00000560029 | chr16:54919256-54919338 | 153.00 | -64.52 | 83 | NA | ENSG00000245694 | hsa-mir-22 | ENST00000560029 | chr16:54919457-54919529 | 152.00 | -59.23 | 80 | NA | ENSG00000245694 | hsa-mir-22 | ENST00000502066 | chr16:54919346-54919431 | 197.00 | -73.08 | 88 | NA | ENSG00000245694 | hsa-mir-22 | ENST00000502066 | chr16:54919006-54919093 | 156.00 | -70.74 | 87 | NA | ENSG00000245694 | hsa-mir-22 | ENST00000502066 | chr16:54919256-54919338 | 153.00 | -64.52 | 83 | NA | ENSG00000245694 | hsa-mir-22 | ENST00000502066 | chr16:54919457-54919529 | 152.00 | -59.23 | 80 | NA | ENSG00000245694 | hsa-mir-22 | ENST00000502066 | chr16:54918891-54918972 | 146.00 | -73.98 | 84 | NA | ENSG00000245694 | hsa-mir-22 | ENST00000558031 | chr16:54919179-54919266 | 159.00 | -73.41 | 86 | NA | ENSG00000245694 | hsa-mir-22 | ENST00000558031 | chr16:54919429-54919511 | 153.00 | -64.52 | 83 | NA | ENSG00000245694 | hsa-mir-22 | ENST00000559432 | chr16:54919251-54919339 | 175.00 | -77.60 | 84 | NA | ENSG00000245694 | hsa-mir-22 | ENST00000559432 | chr16:54919415-54919517 | 155.00 | -71.48 | 99 | NA | ENSG00000245694 | hsa-mir-22 | ENST00000559432 | chr16:54919112-54919192 | 146.00 | -94.16 | 82 | NA | ENSG00000245694 | hsa-mir-22 | ENST00000559432 | chr16:54919507-54919592 | 145.00 | -72.84 | 81 | NA | ENSG00000245694 | hsa-mir-22 | ENST00000560912 | chr16:54919412-54919499 | 164.00 | -77.31 | 87 | NA | ENSG00000245694 | hsa-mir-22 | ENST00000560912 | chr16:54919210-54919291 | 146.00 | -73.98 | 84 | NA | ENSG00000245694 | hsa-mir-22 | ENST00000558952 | chr16:54923676-54923785 | 174.00 | -77.01 | 107 | NA | ENSG00000245694 | hsa-mir-22 | ENST00000558952 | chr16:54923293-54923379 | 156.00 | -96.93 | 85 | NA | ENSG00000245694 | hsa-mir-22 | ENST00000558952 | chr16:54923570-54923654 | 150.00 | -65.03 | 88 | NA | ENSG00000245694 | hsa-mir-22 | ENST00000558952 | chr16:54923392-54923473 | 146.00 | -73.98 | 84 | NA | ENSG00000245694 | hsa-mir-22 | ENST00000560208 | chr16:54924959-54925046 | 159.00 | -97.25 | 89 | NA | ENSG00000245694 | hsa-mir-22 | ENST00000560208 | chr16:54925134-54925220 | 156.00 | -96.93 | 85 | NA | ENSG00000245694 | hsa-mir-22 | ENST00000560208 | chr16:54924878-54924965 | 151.00 | -95.44 | 92 | NA | ENSG00000245694 | hsa-mir-22 | ENST00000560208 | chr16:54925376-54925453 | 150.00 | -63.70 | 78 | NA | ENSG00000245694 | hsa-mir-22 | ENST00000560208 | chr16:54925233-54925314 | 146.00 | -73.98 | 84 | NA | ENSG00000245694 | hsa-mir-22 | ENST00000557792 | chr16:54925178-54925272 | 164.00 | -99.97 | 92 | NA | ENSG00000245694 | hsa-mir-22 | ENST00000557792 | chr16:54925293-54925380 | 159.00 | -97.25 | 89 | NA | ENSG00000245694 | hsa-mir-22 | ENST00000557792 | chr16:54925468-54925554 | 156.00 | -96.93 | 85 | NA | ENSG00000245694 | hsa-mir-139 | ENST00000501177 | chr16:54918876-54918950 | 178.00 | -71.83 | 74 | NA | ENSG00000245694 | hsa-mir-139 | ENST00000501177 | chr16:54919008-54919081 | 162.00 | -57.65 | 68 | NA | ENSG00000245694 | hsa-mir-139 | ENST00000559598 | chr16:54918877-54918951 | 178.00 | -71.83 | 74 | NA | ENSG00000245694 | hsa-mir-139 | ENST00000559598 | chr16:54919009-54919082 | 162.00 | -57.65 | 68 | NA | ENSG00000245694 | hsa-mir-139 | ENST00000559598 | chr16:54919116-54919191 | 155.00 | -56.52 | 71 | NA | ENSG00000245694 | hsa-mir-139 | ENST00000560029 | chr16:54919091-54919166 | 155.00 | -56.52 | 71 | NA | ENSG00000245694 | hsa-mir-139 | ENST00000502066 | chr16:54918984-54919057 | 162.00 | -57.65 | 68 | NA | ENSG00000245694 | hsa-mir-139 | ENST00000502066 | chr16:54919091-54919166 | 155.00 | -56.52 | 71 | NA | ENSG00000245694 | hsa-mir-139 | ENST00000502066 | chr16:54918871-54918926 | 151.00 | -59.46 | 56 | NA | ENSG00000245694 | hsa-mir-139 | ENST00000558031 | chr16:54919264-54919339 | 155.00 | -56.52 | 71 | NA | ENSG00000245694 | hsa-mir-139 | ENST00000559432 | chr16:54919244-54919318 | 178.00 | -71.83 | 74 | NA | ENSG00000245694 | hsa-mir-139 | ENST00000559432 | chr16:54919376-54919449 | 162.00 | -57.65 | 68 | NA | ENSG00000245694 | hsa-mir-139 | ENST00000560912 | chr16:54919174-54919245 | 169.00 | -71.46 | 66 | NA | ENSG00000245694 | hsa-mir-139 | ENST00000560912 | chr16:54919303-54919369 | 165.00 | -50.42 | 65 | NA | ENSG00000245694 | hsa-mir-139 | ENST00000560912 | chr16:54919497-54919572 | 155.00 | -56.52 | 71 | NA | ENSG00000245694 | hsa-mir-139 | ENST00000560912 | chr16:54919387-54919463 | 142.00 | -57.07 | 70 | NA | ENSG00000245694 | hsa-mir-139 | ENST00000558952 | chr16:54923346-54923427 | 170.00 | -73.07 | 75 | NA | ENSG00000245694 | hsa-mir-139 | ENST00000558952 | chr16:54923485-54923558 | 162.00 | -57.65 | 68 | NA | ENSG00000245694 | hsa-mir-139 | ENST00000558952 | chr16:54923534-54923606 | 145.00 | -54.62 | 46 | NA | ENSG00000245694 | hsa-mir-139 | ENST00000558952 | chr16:54923741-54923816 | 143.00 | -55.22 | 71 | NA | ENSG00000245694 | hsa-mir-139 | ENST00000560208 | chr16:54925187-54925268 | 170.00 | -73.07 | 75 | NA | ENSG00000245694 | hsa-mir-139 | ENST00000560208 | chr16:54924892-54924961 | 145.00 | -71.38 | 67 | NA | ENSG00000245694 | hsa-mir-139 | ENST00000557792 | chr16:54925521-54925602 | 170.00 | -73.07 | 75 | NA | ENSG00000245694 | hsa-mir-139 | ENST00000557792 | chr16:54925226-54925295 | 145.00 | -71.38 | 67 | NA |
RNA A-to-I editing events in lncRNA. |
LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
Edited-associated DElncRNAs in cancer. |
LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
lncRNA regulates differentially expressed genes by function as enhancer. |
LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types | ENSG00000245694 | CRNDE,hsa-mir-139,PLP2 | CHOL,LGG,UVM,PAAD,KIRP | ENSG00000245694 | CRNDE,hsa-mir-139,CBX3 | CHOL,LGG,PRAD,PAAD,KIRP | ENSG00000245694 | CRNDE,hsa-mir-22,PPIH | KICH,CHOL,ACC,UCS,KIRP | ENSG00000245694 | CRNDE,hsa-mir-22,WDR33 | KICH,CHOL,ACC,UCS,KIRP | ENSG00000245694 | CRNDE,hsa-mir-22,RXRB | KICH,CHOL,ACC,UCS,KIRP | ENSG00000245694 | CRNDE,hsa-mir-22,C1orf35 | KICH,CHOL,ACC,UCS,KIRP | ENSG00000245694 | CRNDE,hsa-mir-22,CERS5 | KICH,CHOL,ACC,UCS,KIRP | ENSG00000245694 | CRNDE,hsa-mir-22,ATAT1 | KICH,CHOL,ACC,UCS,KIRP | ENSG00000245694 | CRNDE,hsa-mir-22,RBM8A | KICH,CHOL,ACC,UCS,KIRP | ENSG00000245694 | CRNDE,hsa-mir-22,RING1 | KICH,CHOL,ACC,UCS,KIRP | ENSG00000245694 | CRNDE,hsa-mir-22,ILKAP | KICH,CHOL,ACC,UCS,KIRP | ENSG00000245694 | CRNDE,hsa-mir-22,RCE1 | KICH,CHOL,ACC,UCS,KIRP | ENSG00000245694 | CRNDE,hsa-mir-22,EHMT2 | KICH,CHOL,ACC,UCS,KIRP | ENSG00000245694 | CRNDE,hsa-mir-22,ERCC3 | KICH,CHOL,ACC,UCS,KIRP | ENSG00000245694 | CRNDE,hsa-mir-22,POLR2H | KICH,CHOL,ACC,UCS,KIRP | ENSG00000245694 | CRNDE,hsa-mir-22,IFT43 | KICH,CHOL,ACC,UCS,KIRP | ENSG00000245694 | CRNDE,hsa-mir-22,ING5 | KICH,CHOL,ACC,UCS,KIRP | ENSG00000245694 | CRNDE,hsa-mir-22,SAP30BP | KICH,CHOL,ACC,UCS,KIRP | ENSG00000245694 | CRNDE,hsa-mir-22,CLK2 | KICH,CHOL,ACC,UCS,KIRP | ENSG00000245694 | CRNDE,hsa-mir-22,PRPF38A | KICH,CHOL,ACC,UCS,KIRP | ENSG00000245694 | CRNDE,hsa-mir-22,SMPD4 | KICH,CHOL,ACC,UCS,KIRP | ENSG00000245694 | CRNDE,hsa-mir-22,PTMA | KICH,CHOL,ACC,UCS,KIRP | ENSG00000245694 | CRNDE,hsa-mir-22,STMN1 | KICH,CHOL,ACC,UCS,KIRP | ENSG00000245694 | CRNDE,hsa-mir-22,SF3A3 | KICH,CHOL,ACC,UCS,KIRP | ENSG00000245694 | CRNDE,hsa-mir-22,RBMX | KICH,CHOL,ACC,UCS,KIRP | ENSG00000245694 | CRNDE,hsa-mir-22,H3-3B | KICH,CHOL,ACC,UCS,KIRP | ENSG00000245694 | CRNDE,hsa-mir-22,ATG4B | KICH,CHOL,ACC,UCS,KIRP | ENSG00000245694 | CRNDE,hsa-mir-22,ARL16 | KICH,CHOL,ACC,UCS,KIRP | ENSG00000245694 | CRNDE,hsa-mir-22,COPS7B | KICH,CHOL,ACC,UCS,KIRP | ENSG00000245694 | CRNDE,hsa-mir-22,INTS11 | KICH,CHOL,ACC,UCS,KIRP | ENSG00000245694 | CRNDE,hsa-mir-22,SUMO2 | KICH,CHOL,ACC,UCS,KIRP | ENSG00000245694 | CRNDE,hsa-mir-22,C14orf93 | KICH,CHOL,ACC,UCS,KIRP | ENSG00000245694 | CRNDE,hsa-mir-22,RBM14 | KICH,CHOL,ACC,UCS,KIRP | ENSG00000245694 | CRNDE,hsa-mir-22,ABI2 | KICH,CHOL,ACC,UCS,KIRP | ENSG00000245694 | CRNDE,hsa-mir-22,UBXN11 | KICH,CHOL,ACC,UCS,KIRP | ENSG00000245694 | CRNDE,hsa-mir-22,IRF3 | KICH,CHOL,ACC,UCS,KIRP | ENSG00000245694 | CRNDE,hsa-mir-22,NUP85 | KICH,CHOL,ACC,UCS,KIRP | ENSG00000245694 | CRNDE,hsa-mir-22,IQCB1 | KICH,CHOL,ACC,UCS,KIRP | ENSG00000245694 | CRNDE,hsa-mir-22,MUTYH | KICH,CHOL,ACC,UCS,KIRP | ENSG00000245694 | CRNDE,hsa-mir-22,C11orf49 | KICH,CHOL,ACC,UCS,KIRP | ENSG00000245694 | CRNDE,hsa-mir-22,SRRT | KICH,CHOL,ACC,UCS,KIRP | ENSG00000245694 | CRNDE,hsa-mir-22,PMF1 | KICH,CHOL,ACC,UCS,KIRP | ENSG00000245694 | CRNDE,hsa-mir-22,LRIG2 | KICH,CHOL,ACC,UCS,KIRP | ENSG00000245694 | CRNDE,hsa-mir-22,CCHCR1 | KICH,CHOL,ACC,UCS,KIRP |
ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | ENSG00000245694.7 | ENST00000501177.6 | 93 | 468 | 749 | ENSG00000245694.7 | ENST00000559598.5 | 84 | 135 | 389 | ENSG00000245694.7 | ENST00000560029.4 | 60 | 179 | 0 | ENSG00000245694.7 | ENST00000502066.5 | 50 | 335 | 487 | ENSG00000245694.7 | ENST00000558031.4 | 50 | 335 | 487 | ENSG00000245694.7 | ENST00000559432.4 | 46 | 324 | 461 | ENSG00000245694.7 | ENST00000560912.4 | 67 | 265 | 62 | ENSG00000245694.7 | ENST00000558952.1 | 67 | 120 | 323 | ENSG00000245694.7 | ENST00000560208.1 | 79 | 238 | 2 | ENSG00000245694.7 | ENST00000557792.1 | 116 | 36 | 386 |
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