 lncRNA targets the enhancer region and positively regulates the gene expression. |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | IDH3A,DIP2B,NEK4,FNIP1,UBR3,ARID1A,HCFC1,RNF123,PTPRK,RBBP6,TBC1D5,ATM,MAP4K3,RDX,TAF4,ENTPD7,SMARCC2,SMCR8,PPP1R12A,GNL3L,LRBA,POLR1B,TRIP11,ACVR1B,RIOK3,RIPK1,RASAL2,KAT6B,C20orf194,EDEM1,C11orf58,NEDD1,FCHO2,CREBBP,PBRM1,SRRM2,ZSWIM8,PSMC1,HEATR6,SRP72,SACM1L,MAN1A2,PCYOX1,L2HGDH,ATP11B,PRRC2C,RAB8B,SNX19,VPS35L,PDPK1,R3HDM2,PHF3,PAK2,ZEB2,LONP2,ARID1B,STRN,CALD1,SLFN5,GOLIM4,RPRD1B,TTC3,KIDINS220,CDC27,GTF2H3,TMCO3,RNF31,FBXO11,CLASP2,APPBP2,GANAB,SEC23A,GIT2,MINK1,SLC35E2B,MKLN1,TLN1,MFSD9,ITSN2,RNF38,SLTM,RB1CC1,TIMM23B,SMAD1,WIPF2,MYCBP2,FBXL14,AGFG1,SNRNP200,MKRN2,ZFAND3,TANGO6,BBS7,UBE4B,MED12,TP53BP2,NDST1,PRR12,BRPF3,YAP1,FOXN3,GTF3C3,PROSER3,VTA1,VPS52,MARCHF7,OSBPL8,NCOA4,NUP107,KAT7,MTRR,AZI2,UBAP2L,GAB1,DCP1A,KDM2A,ACTR2,DCAF7,PLSCR4,GPATCH8,CHERP,ABL2,FASTKD2,TUT7,KBTBD2,MED1,GTF2I,NUP58,NPAT,HBP1,EIF4G2,IPO9,PPFIBP1,GID4,CDK13,CDC23,CLASP1,SETX,GON4L,SMG8,CAB39,ZFP36L1,HUWE1,PRKAR1A,WASHC4,SLCO2B1,MIS18BP1,YME1L1,KCTD20,FARP1,ZZEF1,ATL1,NSRP1,DCAF5,TLK1,PTAR1,WDTC1,FAM13B,MED23,NOTCH2,ZMYM3,EPM2AIP1,DPP8,RANBP10,ATF1,FNDC3B,UBFD1,ADAT1,LATS1,RPRD1A,ARHGAP31,HERC1,SPOPL,POLG,NOMO2,MYD88,CLIP4,FAM168B,UACA,USP4,DLST,PNPO,WDR11,SLC36A1,SLC30A6,XPO7,TRAPPC11,NAF1,PIBF1,FRS2,TRMT61B,NUP160,KHNYN,PLEKHA1,FOXJ3,ZNF41,EDC4,LARP1,UBXN7,EHBP1,SP2,NPEPPS,ITGB1,RNF214,BZW1,TUT4,SLAIN2,PKN2,NDEL1,TASOR,ARIH1,PUM1,KANSL1L,FNDC3A,SEC24B,RNFT1,ZFP1,SEC24A,ACSL3,ACAP2,WDR37,KMT2D,RFX1,MAZ,SMARCA1,FUBP1,DIDO1,BCL9,EXOC7,PKD2,ANAPC1,ANKRD27,MON2,SRRM1,FBXO21,CEP57,USP33,MAPK14,ETV3,ZFC3H1,RNF111,PRRC2A,TP53BP1,TUBGCP4,PPIP5K2,TMEM237,USP32,SNX30,G3BP1,GIGYF2,LLGL1,VPS13D,WBP11,FERMT2,STAT3,PIAS1,PRMT5,AP3B1,BRD2,PAN3,LUZP1,AFF4,DDX3X,IPO5,CRIM1,ASXL2,NIPBL,PHF8,USP47,POLR2B,ESF1,FRYL,BAZ2A,CEP350,PIKFYVE,CLCN6,THUMPD1,HSPG2,EIF3C,BCORL1,ASH1L,MAP3K3,SLC10A7,GAPVD1,DNAJC13,C16orf70,MED13,RAP1B,TMEM131,DYRK2,EP400,XRN1,NFKB1,SMG6,EPG5,LTN1,ADNP2,SPRING1,KIAA0232,PHF12,SKI,NUP98,USP24,ZCCHC14,ATP11A,BTN2A1,CIAO1,TRIP12,AKAP10,PDCD6IP,CHD2,GTF2A1,CHD9,MPHOSPH8,MEF2A,MYO18A,SOS1,SMAD5,MORC3,CSNK1A1,ZEB1,TUBGCP3,GOSR1,SETD7,BSDC1,AKAP13,TTC37,SIN3B,ABI2,WAC,EEF2K,PHF20L1,ELF1,VWA8,MOSPD2,SUFU,MAP4K5,RPE,GCC2,TAF2,ARL6IP6,CDK2,TRIM33,CPSF6,PIP5K1A,DLG5,RUSF1,THOC2,C2orf49,CANX,PAFAH1B1,MPRIP,HAUS2,NEMF,CTDSP2,SRCAP,CCNK,NCOR1,EMC1,TAF5L,SCAF11,PGM2,CNOT1,TMEM170A,TRAF3IP1,MAML1,CAMSAP2,TSTD2,CEBPZ,TRRAP,ITSN1,PCNX4,ZC3H7A,FCF1,NCBP3,EIF4G3,NEDD4,DNAJC16,ATXN1L,FAM214A,STX17,SECISBP2L,UBR1,ACTR3,PCDHGC3,SEPTIN10,DHX40,CHD8,PIP4K2C,RAB3GAP1,MED14,TSR1,KIAA0100,XPC,ARPP19,KIRREL1,ERBIN,DNAJC14,MTMR4,PHACTR2,INTS3,ANKRD11,ITPRIPL2,AGGF1,ZC3H11A,ATF7,KATNAL1,FKTN,WASF2,VGLL4,MACF1,DHX8,NBR1,NUMB,MARF1,RIC1,SPRED2,KDM5B,KTN1,RAPGEF2,C5orf24,ILK,ATXN2L,RRN3,FARP2,SEC24D,SNRK,OTUD4,ZDHHC17,DOCK7,NEK9,SEPTIN11,LRCH4,KIF13A,CLIP1,HGS,RFFL,ARNT,PPIL4,RBM39,RAI1,ATF2,NCOA2,UBE3B,SNAP23,CCSER2,MAPK1,RNF169,UBR5,USP42,PRKAR2A,ITPRID2,EYA3,URB1,MIER3,MBD1,ROCK2,CCDC88A,ZBED6,NUP54,C1orf109,ZC3H18,SVIL,DESI2,UEVLD,KDM5C,SATB1,NOTCH3,TGFBRAP1,ETS1,RREB1,UHRF1BP1,ABL1,WNK1,BRPF1,SSH1,MBNL2,SLC2A10,PPP4R2,SOCS7,PFAS,KLHL5,SP1,KPNA3,CCNYL1,EPS15,MAP4K4,OSBPL9,LYSMD3,SIKE1,IRF2,KMT2A,TBP,ZYG11B,ANKRD26,SLC12A4,GALC,USP7,NFAT5,PPIG,KIF2A,TVP23B,REST,EIF3L,ATE1,EMSY,SOS2,SLC30A5,LARS2,BACE1,POLK,RANBP2,ELK3,IL6ST,DYRK1A,HAT1,CARM1,ABCE1,MRTFB,USP8,TRMT11,AGO2,ABHD16A,FYTTD1,PAXBP1,TECPR2,ITFG1,PHF2,STK4,HECTD4,IPO7,SETD2,CPSF2,CKAP5,SMC6,FAM172A,SPG11,GLYR1,DHX36,VPS13C,MSL1,MBTD1,IBTK,FER,TANK,LMTK2,RAB6A,KPNB1,TUBA1B,QKI,VPS26C,AEBP2,BOD1L1,ZFYVE16,RRP1B,CEP170,RNF4,NT5C2,ZMYND11,RALGAPB,CCNG2,HIPK1,QRICH1,RNF40,QTRT2,TACC1,EPB41,SNX6,LATS2,PSEN1,MON1B,MYO5A,CEP104,INTS6,CDK19,ZMYM5,PTPN11,WDR36,SCYL2,MCM3AP,ZNF17,ADGRL2,POLR2A,MANEA,ANKFY1,DNAJC11,NR2C2,DIP2A,CLTC,ATRN,GLG1,CTNND1,ARID4B,NCOA1,PARG,EPB41L5,CIC,ATP2A2,AASDH,SON,PIK3C3,ZC3H13,BIRC2,PTPN12,M6PR,SNX29,APAF1,GBF1,BBX,CDYL,TAF1,BTBD7,PCNX1,SLC7A6OS,UBR4,DDI2,CDH11,ZNF720,ZNF8,SLF2,IQGAP1,SLMAP,EEA1,CMTR2,SNTB2,KLF7,FBXW11,BPTF,STK24,BCLAF1,ARHGAP5,MPDZ,MCC,MFSD14A,ZMIZ1,FTO,KDM1B,UBN1,HSD17B4,SEC14L1,SEPSECS,SETD5,SF3B1,ADD1,NIPA2,ESYT1,ARSB,MTMR9,ARID4A,SEPTIN8,DYNC1LI2,TNKS,KBTBD4,VEZT,MIDEAS,ZNF106,RASA1,CERT1,PUM2,SENP6,INCENP,MBTPS1,EXT2,SWAP70,MED13L,SF3A1,COG6,BCL9L,ABHD5,KMT2B,TAF1B,SERINC3,DOCK9,NCOA3,SYNJ1,PIGN,SBF2,ANKS1A,ERC1,TNPO1,RHOT1,SPAG9,PHC1,MGRN1,ACLY,PGM3,NEK7,H6PD,FAM160B1,SPTLC1,RO60,CSNK1G3,HEATR5B,BIRC6,PPM1A,SEC31A,CALCOCO1,TBC1D9B,CYFIP1,ZNF28,TMEM184C,LRP1,ATRX,DENND5A,DPY19L3,BDP1,SYNRG,AKAP9,SCAF4,VPS39,PDS5A,USP10,MIA3,RLF,KIAA1191,POGZ,AFAP1,EPC1,MCFD2,TRAF7,NDUFS1,NSD1,SUPT20H,TAB3 | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
 |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000241990 | ENST00000451166 | exon_skip_6457 | chr1:52083339-52083541 | -19.04 | -0.1244 | BTF3L4 | ENST00000313334 | Frame-shift | | ENSG00000241990 | ENST00000445441 | exon_skip_59439 | chr11:57737912-57738026 | -11.21 | -0.1168 | TMX2 | ENST00000278422 | In-frame | | ENSG00000241990 | ENST00000445441 | exon_skip_90104 | chr12:10709907-10710114 | -19.83 | -0.1140 | YBX3 | ENST00000228251 | In-frame | | ENSG00000241990 | ENST00000445441 | exon_skip_379903 | chr3:184180644-184180650 | -1.22 | -0.6100 | AP2M1 | ENST00000292807 | In-frame | | ENSG00000241990 | ENST00000445441 | exon_skip_358606 | chr20:63202286-63203807 | -27.59 | -0.1091 | YTHDF1 | ENST00000370339 | In-frame | | ENSG00000241990 | ENST00000451166 | exon_skip_430434 | chr4:82356536-82356683 | -13.89 | -0.2013 | HNRNPD | ENST00000313899 | In-frame | | ENSG00000241990 | ENST00000445441 | exon_skip_445390 | chr5:150403120-150403312 | -16.83 | -0.1065 | CD74 | ENST00000009530 | In-frame | | ENSG00000241990 | ENST00000445441 | exon_skip_29583 | chr1:114780109-114780215 | -8.85 | -0.1093 | SIKE1 | ENST00000060969 | Frame-shift | | ENSG00000241990 | ENST00000416202 | exon_skip_291980 | chr17:59119318-59119495 | -14.63 | -0.1393 | SKA2 | ENST00000330137 | In-frame | | ENSG00000241990 | ENST00000445441 | exon_skip_343108 | chr2:127051153-127051243 | -13.96 | -0.1837 | BIN1 | ENST00000316724 | In-frame |
| lncRNA targets by miRNA. |
 |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source | | ENSG00000241990 | hsa-mir-130a | ENST00000416202 | chr22:46053741-46053837 | 203.00 | -103.74 | 96 | NA | | ENSG00000241990 | hsa-mir-130a | ENST00000416202 | chr22:46054015-46054105 | 164.00 | -69.20 | 91 | NA | | ENSG00000241990 | hsa-mir-130a | ENST00000416202 | chr22:46053824-46053915 | 144.00 | -81.78 | 70 | NA | | ENSG00000241990 | hsa-mir-130a | ENST00000451166 | chr22:46054877-46054966 | 169.00 | -72.90 | 92 | NA | | ENSG00000241990 | hsa-mir-130a | ENST00000451166 | chr22:46055022-46055112 | 167.00 | -60.16 | 89 | NA | | ENSG00000241990 | hsa-mir-130a | ENST00000451166 | chr22:46055183-46055273 | 164.00 | -69.20 | 91 | NA | | ENSG00000241990 | hsa-mir-130a | ENST00000451166 | chr22:46054479-46054567 | 152.00 | -83.64 | 85 | NA | | ENSG00000241990 | hsa-mir-130a | ENST00000451166 | chr22:46054663-46054749 | 147.00 | -80.22 | 85 | NA | | ENSG00000241990 | hsa-mir-130a | ENST00000451166 | chr22:46054567-46054654 | 144.00 | -84.70 | 53 | NA | | ENSG00000241990 | hsa-mir-130a | ENST00000451166 | chr22:46054767-46054842 | 140.00 | -57.93 | 87 | NA | | ENSG00000241990 | hsa-mir-130a | ENST00000445441 | chr22:46055048-46055138 | 164.00 | -69.20 | 91 | NA | | ENSG00000241990 | hsa-mir-152 | ENST00000416202 | chr22:46053772-46053864 | 208.00 | -107.89 | 87 | NA | | ENSG00000241990 | hsa-mir-152 | ENST00000416202 | chr22:46053924-46054008 | 165.00 | -82.73 | 87 | NA | | ENSG00000241990 | hsa-mir-152 | ENST00000451166 | chr22:46054657-46054737 | 189.00 | -84.63 | 86 | NA | | ENSG00000241990 | hsa-mir-152 | ENST00000451166 | chr22:46054497-46054583 | 185.00 | -102.78 | 88 | NA | | ENSG00000241990 | hsa-mir-152 | ENST00000451166 | chr22:46054775-46054853 | 171.00 | -72.75 | 83 | NA | | ENSG00000241990 | hsa-mir-152 | ENST00000451166 | chr22:46055092-46055176 | 165.00 | -82.73 | 87 | NA | | ENSG00000241990 | hsa-mir-152 | ENST00000445441 | chr22:46054943-46055041 | 173.00 | -87.54 | 96 | NA | | ENSG00000241990 | hsa-mir-199a-1 | ENST00000416202 | chr22:46053717-46053783 | 158.00 | -50.86 | 59 | NA | | ENSG00000241990 | hsa-mir-199a-1 | ENST00000416202 | chr22:46053774-46053842 | 154.00 | -76.33 | 59 | NA | | ENSG00000241990 | hsa-mir-199a-1 | ENST00000416202 | chr22:46053901-46053974 | 140.00 | -63.26 | 72 | NA | | ENSG00000241990 | hsa-mir-199a-1 | ENST00000451166 | chr22:46054638-46054712 | 170.00 | -65.12 | 76 | NA | | ENSG00000241990 | hsa-mir-199a-1 | ENST00000451166 | chr22:46054507-46054581 | 157.00 | -64.90 | 68 | NA | | ENSG00000241990 | hsa-mir-199a-2 | ENST00000416202 | chr22:46053825-46053933 | 212.00 | -103.94 | 102 | NA | | ENSG00000241990 | hsa-mir-199a-2 | ENST00000416202 | chr22:46053720-46053829 | 179.00 | -109.87 | 109 | NA | | ENSG00000241990 | hsa-mir-199a-2 | ENST00000416202 | chr22:46053999-46054109 | 178.00 | -87.52 | 108 | NA | | ENSG00000241990 | hsa-mir-199a-2 | ENST00000451166 | chr22:46054986-46055101 | 198.00 | -76.81 | 114 | NA | | ENSG00000241990 | hsa-mir-199a-2 | ENST00000451166 | chr22:46054780-46054897 | 192.00 | -94.17 | 110 | NA | | ENSG00000241990 | hsa-mir-199a-2 | ENST00000451166 | chr22:46054636-46054750 | 190.00 | -108.46 | 117 | NA | | ENSG00000241990 | hsa-mir-199a-2 | ENST00000451166 | chr22:46054512-46054623 | 187.00 | -117.34 | 108 | NA | | ENSG00000241990 | hsa-mir-199a-2 | ENST00000451166 | chr22:46055167-46055277 | 178.00 | -87.52 | 108 | NA | | ENSG00000241990 | hsa-mir-199a-2 | ENST00000451166 | chr22:46054880-46054978 | 152.00 | -86.02 | 100 | NA | | ENSG00000241990 | hsa-mir-199a-2 | ENST00000445441 | chr22:46055032-46055142 | 178.00 | -87.52 | 108 | NA | | ENSG00000241990 | hsa-mir-199a-2 | ENST00000445441 | chr22:46054916-46054966 | 145.00 | -71.22 | 56 | NA | | ENSG00000241990 | hsa-mir-199b | ENST00000416202 | chr22:46054025-46054136 | 177.00 | -85.13 | 112 | NA | | ENSG00000241990 | hsa-mir-199b | ENST00000416202 | chr22:46053776-46053882 | 174.00 | -118.56 | 107 | NA | | ENSG00000241990 | hsa-mir-199b | ENST00000416202 | chr22:46053894-46054016 | 150.00 | -111.31 | 121 | NA | | ENSG00000241990 | hsa-mir-199b | ENST00000451166 | chr22:46054844-46054952 | 217.00 | -93.71 | 114 | NA | | ENSG00000241990 | hsa-mir-199b | ENST00000451166 | chr22:46054507-46054613 | 188.00 | -118.27 | 102 | NA | | ENSG00000241990 | hsa-mir-199b | ENST00000451166 | chr22:46054732-46054837 | 180.00 | -98.80 | 111 | NA | | ENSG00000241990 | hsa-mir-199b | ENST00000451166 | chr22:46055193-46055304 | 177.00 | -85.13 | 112 | NA | | ENSG00000241990 | hsa-mir-199b | ENST00000451166 | chr22:46054990-46055111 | 174.00 | -80.53 | 120 | NA | | ENSG00000241990 | hsa-mir-199b | ENST00000451166 | chr22:46054632-46054728 | 154.00 | -97.29 | 107 | NA | | ENSG00000241990 | hsa-mir-199b | ENST00000445441 | chr22:46055058-46055169 | 177.00 | -85.13 | 112 | NA | | ENSG00000241990 | hsa-mir-199b | ENST00000445441 | chr22:46054948-46055049 | 146.00 | -94.85 | 108 | NA | | ENSG00000241990 | hsa-mir-335 | ENST00000416202 | chr22:46054016-46054112 | 175.00 | -71.07 | 95 | NA | | ENSG00000241990 | hsa-mir-335 | ENST00000416202 | chr22:46053907-46054002 | 141.00 | -81.16 | 88 | NA | | ENSG00000241990 | hsa-mir-335 | ENST00000451166 | chr22:46055184-46055280 | 175.00 | -71.07 | 95 | NA | | ENSG00000241990 | hsa-mir-335 | ENST00000451166 | chr22:46054720-46054818 | 162.00 | -74.45 | 95 | NA | | ENSG00000241990 | hsa-mir-335 | ENST00000451166 | chr22:46054461-46054549 | 153.00 | -83.22 | 91 | NA | | ENSG00000241990 | hsa-mir-335 | ENST00000451166 | chr22:46054563-46054651 | 153.00 | -86.46 | 89 | NA | | ENSG00000241990 | hsa-mir-335 | ENST00000451166 | chr22:46054875-46054975 | 152.00 | -77.52 | 97 | NA | | ENSG00000241990 | hsa-mir-335 | ENST00000451166 | chr22:46054977-46055076 | 150.00 | -56.57 | 92 | NA | | ENSG00000241990 | hsa-mir-335 | ENST00000451166 | chr22:46055079-46055170 | 149.00 | -77.44 | 95 | NA | | ENSG00000241990 | hsa-mir-335 | ENST00000451166 | chr22:46054785-46054880 | 142.00 | -72.01 | 65 | NA | | ENSG00000241990 | hsa-mir-335 | ENST00000445441 | chr22:46055049-46055145 | 175.00 | -71.07 | 95 | NA | | ENSG00000241990 | hsa-mir-379 | ENST00000416202 | chr22:46053894-46053962 | 140.00 | -59.58 | 59 | NA | | ENSG00000241990 | hsa-mir-379 | ENST00000451166 | chr22:46054478-46054545 | 140.00 | -56.92 | 59 | NA | | ENSG00000241990 | hsa-mir-379 | ENST00000451166 | chr22:46054657-46054724 | 140.00 | -54.51 | 67 | NA | | ENSG00000241990 | hsa-mir-432 | ENST00000416202 | chr22:46053817-46053909 | 201.00 | -85.58 | 92 | NA | | ENSG00000241990 | hsa-mir-432 | ENST00000416202 | chr22:46053906-46054004 | 195.00 | -83.55 | 91 | NA | | ENSG00000241990 | hsa-mir-432 | ENST00000416202 | chr22:46054050-46054145 | 147.00 | -69.69 | 84 | NA | | ENSG00000241990 | hsa-mir-432 | ENST00000451166 | chr22:46055070-46055172 | 199.00 | -77.04 | 90 | NA | | ENSG00000241990 | hsa-mir-432 | ENST00000451166 | chr22:46054802-46054894 | 190.00 | -72.64 | 98 | NA | | ENSG00000241990 | hsa-mir-432 | ENST00000451166 | chr22:46054904-46055001 | 180.00 | -79.76 | 101 | NA | | ENSG00000241990 | hsa-mir-432 | ENST00000451166 | chr22:46054636-46054741 | 166.00 | -93.30 | 104 | NA | | ENSG00000241990 | hsa-mir-432 | ENST00000451166 | chr22:46054465-46054557 | 159.00 | -90.37 | 88 | NA | | ENSG00000241990 | hsa-mir-432 | ENST00000451166 | chr22:46055218-46055313 | 147.00 | -69.69 | 84 | NA | | ENSG00000241990 | hsa-mir-432 | ENST00000445441 | chr22:46054937-46055037 | 211.00 | -85.58 | 98 | NA | | ENSG00000241990 | hsa-mir-432 | ENST00000445441 | chr22:46055083-46055178 | 147.00 | -69.69 | 84 | NA | | ENSG00000241990 | hsa-let-7c | ENST00000416202 | chr22:46053751-46053840 | 167.00 | -96.63 | 89 | NA | | ENSG00000241990 | hsa-let-7c | ENST00000416202 | chr22:46054055-46054141 | 155.00 | -56.40 | 86 | NA | | ENSG00000241990 | hsa-let-7c | ENST00000416202 | chr22:46053891-46053971 | 148.00 | -67.55 | 84 | NA | | ENSG00000241990 | hsa-let-7c | ENST00000451166 | chr22:46054637-46054735 | 172.00 | -81.21 | 95 | NA | | ENSG00000241990 | hsa-let-7c | ENST00000451166 | chr22:46054461-46054549 | 158.00 | -75.61 | 86 | NA | | ENSG00000241990 | hsa-let-7c | ENST00000451166 | chr22:46055223-46055309 | 155.00 | -56.40 | 86 | NA | | ENSG00000241990 | hsa-let-7c | ENST00000451166 | chr22:46054877-46054958 | 153.00 | -60.42 | 86 | NA | | ENSG00000241990 | hsa-let-7c | ENST00000451166 | chr22:46054953-46055038 | 148.00 | -52.10 | 80 | NA | | ENSG00000241990 | hsa-let-7c | ENST00000451166 | chr22:46055066-46055139 | 142.00 | -60.15 | 81 | NA | | ENSG00000241990 | hsa-let-7c | ENST00000445441 | chr22:46055088-46055174 | 155.00 | -56.40 | 86 | NA | | ENSG00000241990 | hsa-mir-125b-1 | ENST00000416202 | chr22:46053916-46054005 | 201.00 | -80.11 | 91 | NA | | ENSG00000241990 | hsa-mir-125b-1 | ENST00000416202 | chr22:46053771-46053857 | 194.00 | -99.13 | 91 | NA | | ENSG00000241990 | hsa-mir-125b-1 | ENST00000451166 | chr22:46055083-46055173 | 207.00 | -77.19 | 91 | NA | | ENSG00000241990 | hsa-mir-125b-1 | ENST00000451166 | chr22:46054768-46054856 | 170.00 | -67.64 | 87 | NA | | ENSG00000241990 | hsa-mir-125b-1 | ENST00000451166 | chr22:46054624-46054717 | 162.00 | -88.42 | 90 | NA | | ENSG00000241990 | hsa-mir-125b-1 | ENST00000451166 | chr22:46054521-46054604 | 150.00 | -91.00 | 82 | NA | | ENSG00000241990 | hsa-mir-125b-1 | ENST00000451166 | chr22:46054884-46054968 | 148.00 | -70.71 | 86 | NA | | ENSG00000241990 | hsa-mir-125b-1 | ENST00000445441 | chr22:46054947-46055038 | 203.00 | -77.28 | 93 | NA | | ENSG00000241990 | hsa-mir-125b-2 | ENST00000416202 | chr22:46053891-46053974 | 171.00 | -81.01 | 87 | NA | | ENSG00000241990 | hsa-mir-125b-2 | ENST00000416202 | chr22:46053766-46053872 | 152.00 | -114.23 | 104 | NA | | ENSG00000241990 | hsa-mir-125b-2 | ENST00000451166 | chr22:46054648-46054744 | 166.00 | -89.04 | 91 | NA | | ENSG00000241990 | hsa-mir-125b-2 | ENST00000451166 | chr22:46055089-46055177 | 164.00 | -76.13 | 80 | NA | | ENSG00000241990 | hsa-mir-125b-2 | ENST00000451166 | chr22:46054518-46054606 | 159.00 | -97.39 | 89 | NA | | ENSG00000241990 | hsa-mir-125b-2 | ENST00000451166 | chr22:46054772-46054864 | 143.00 | -73.22 | 85 | NA | | ENSG00000241990 | hsa-mir-125b-2 | ENST00000445441 | chr22:46054954-46055042 | 164.00 | -76.13 | 80 | NA |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation | | ENSG00000241990 | ENST00000416202 | RNF38 | ENSG00000137075 | ENST00000377877 | -0.1121 | 6 | - | UCEC | | ENSG00000241990 | ENST00000416202 | SEC24B | ENSG00000138802 | ENST00000504968 | -0.2097 | 59 | - | LIHC | | ENSG00000241990 | ENST00000416202 | SEC24B | ENSG00000138802 | ENST00000399100 | -0.2483 | 262 | - | LIHC | | ENSG00000241990 | ENST00000451166 | SEC24B | ENSG00000138802 | ENST00000504968 | -0.1349 | 165 | - | LIHC | | ENSG00000241990 | ENST00000451166 | SEC24B | ENSG00000138802 | ENST00000399100 | -0.2483 | 675 | - | LIHC | | ENSG00000241990 | ENST00000445441 | SEC24B | ENSG00000138802 | ENST00000399100 | -0.2483 | 85 | - | LIHC | | ENSG00000241990 | ENST00000451166 | MYD88 | ENSG00000172936 | ENST00000443433 | -0.1264 | 1 | - | LIHC | | ENSG00000241990 | ENST00000445441 | MYD88 | ENSG00000172936 | ENST00000396334 | -0.1029 | 1 | - | LIHC | | ENSG00000241990 | ENST00000445441 | MYD88 | ENSG00000172936 | ENST00000417037 | -0.1029 | 1 | - | LIHC | | ENSG00000241990 | ENST00000445441 | MYD88 | ENSG00000172936 | ENST00000424893 | -0.1060 | 1 | - | LIHC | | ENSG00000241990 | ENST00000445441 | MYD88 | ENSG00000172936 | ENST00000421516 | -0.1029 | 1 | - | LIHC | | ENSG00000241990 | ENST00000416202 | FERMT2 | ENSG00000073712 | ENST00000399304 | -0.1642 | 306 | - | UCEC,LIHC | | ENSG00000241990 | ENST00000416202 | MPDZ | ENSG00000107186 | ENST00000536827 | -0.1791 | 131 | - | UCEC,LIHC | | ENSG00000241990 | ENST00000416202 | MPDZ | ENSG00000107186 | ENST00000447879 | -0.1791 | 132 | - | UCEC,LIHC | | ENSG00000241990 | ENST00000416202 | MPDZ | ENSG00000107186 | ENST00000546205 | -1.0771 | 73 | - | UCEC,LIHC | | ENSG00000241990 | ENST00000416202 | MPDZ | ENSG00000107186 | ENST00000437441 | -0.1256 | 1 | - | UCEC,LIHC | | ENSG00000241990 | ENST00000416202 | PLSCR4 | ENSG00000114698 | ENST00000446574 | -0.1217 | 18 | - | UCEC,LIHC | | ENSG00000241990 | ENST00000416202 | PLSCR4 | ENSG00000114698 | ENST00000493382 | -0.1577 | 49 | - | UCEC,LIHC | | ENSG00000241990 | ENST00000416202 | SLCO2B1 | ENSG00000137491 | ENST00000525650 | -0.1313 | 149 | - | LIHC | | ENSG00000241990 | ENST00000416202 | SLCO2B1 | ENSG00000137491 | ENST00000428359 | -0.1502 | 168 | - | LIHC | | ENSG00000241990 | ENST00000451166 | FERMT2 | ENSG00000073712 | ENST00000399304 | -0.1444 | 95 | - | UCEC,LIHC | | ENSG00000241990 | ENST00000451166 | MPDZ | ENSG00000107186 | ENST00000536827 | -0.1231 | 86 | - | UCEC,LIHC | | ENSG00000241990 | ENST00000451166 | MPDZ | ENSG00000107186 | ENST00000447879 | -0.1231 | 86 | - | UCEC,LIHC | | ENSG00000241990 | ENST00000451166 | MPDZ | ENSG00000107186 | ENST00000546205 | -1.5280 | 453 | - | UCEC,LIHC | | ENSG00000241990 | ENST00000451166 | PLSCR4 | ENSG00000114698 | ENST00000446574 | -0.1257 | 241 | - | UCEC,LIHC | | ENSG00000241990 | ENST00000451166 | PLSCR4 | ENSG00000114698 | ENST00000493382 | -0.4493 | 113 | - | UCEC,LIHC | | ENSG00000241990 | ENST00000451166 | SLCO2B1 | ENSG00000137491 | ENST00000525650 | -0.1427 | 7 | - | LIHC | | ENSG00000241990 | ENST00000451166 | SLCO2B1 | ENSG00000137491 | ENST00000428359 | -0.1707 | 26 | - | LIHC | | ENSG00000241990 | ENST00000451166 | SLCO2B1 | ENSG00000137491 | ENST00000526839 | -0.1061 | 1 | - | LIHC | | ENSG00000241990 | ENST00000445441 | FERMT2 | ENSG00000073712 | ENST00000399304 | -0.1642 | 129 | - | UCEC,LIHC | | ENSG00000241990 | ENST00000445441 | MPDZ | ENSG00000107186 | ENST00000546205 | -0.4057 | 1 | - | UCEC,LIHC | | ENSG00000241990 | ENST00000445441 | MPDZ | ENSG00000107186 | ENST00000494251 | -0.1684 | 1 | - | UCEC,LIHC | | ENSG00000241990 | ENST00000445441 | PLSCR4 | ENSG00000114698 | ENST00000493382 | -0.1392 | 112 | - | UCEC,LIHC | | ENSG00000241990 | ENST00000416202 | CALCOCO1 | ENSG00000012822 | ENST00000550804 | -0.1678 | 283 | - | UCEC | | ENSG00000241990 | ENST00000451166 | CALCOCO1 | ENSG00000012822 | ENST00000550804 | -0.1678 | 696 | - | UCEC | | ENSG00000241990 | ENST00000445441 | CALCOCO1 | ENSG00000012822 | ENST00000262059 | -0.1209 | 1 | - | UCEC | | ENSG00000241990 | ENST00000445441 | CALCOCO1 | ENSG00000012822 | ENST00000546443 | -0.1209 | 1 | - | UCEC | | ENSG00000241990 | ENST00000445441 | CALCOCO1 | ENSG00000012822 | ENST00000430117 | -0.1209 | 1 | - | UCEC | | ENSG00000241990 | ENST00000445441 | CALCOCO1 | ENSG00000012822 | ENST00000550804 | -0.1678 | 106 | - | UCEC | | ENSG00000241990 | ENST00000416202 | MAP3K3 | ENSG00000198909 | ENST00000579585 | -0.1059 | 1 | - | UCEC | | ENSG00000241990 | ENST00000416202 | MAP3K3 | ENSG00000198909 | ENST00000584573 | -0.1822 | 50 | - | UCEC | | ENSG00000241990 | ENST00000416202 | MAP3K3 | ENSG00000198909 | ENST00000361733 | -0.1059 | 1 | - | UCEC | | ENSG00000241990 | ENST00000416202 | MAP3K3 | ENSG00000198909 | ENST00000361357 | -0.1059 | 1 | - | UCEC | | ENSG00000241990 | ENST00000416202 | MAP3K3 | ENSG00000198909 | ENST00000577395 | -0.2510 | 43 | - | UCEC | | ENSG00000241990 | ENST00000416202 | MAP3K3 | ENSG00000198909 | ENST00000585302 | -0.1047 | 1 | - | UCEC | | ENSG00000241990 | ENST00000451166 | MAP3K3 | ENSG00000198909 | ENST00000584573 | -0.1762 | 28 | - | UCEC | | ENSG00000241990 | ENST00000451166 | MAP3K3 | ENSG00000198909 | ENST00000577395 | -0.2339 | 41 | - | UCEC | | ENSG00000241990 | ENST00000445441 | MAP3K3 | ENSG00000198909 | ENST00000579585 | -0.1092 | 1 | - | UCEC | | ENSG00000241990 | ENST00000445441 | MAP3K3 | ENSG00000198909 | ENST00000584573 | -0.1059 | 13 | - | UCEC | | ENSG00000241990 | ENST00000445441 | MAP3K3 | ENSG00000198909 | ENST00000361733 | -0.1092 | 1 | - | UCEC | | ENSG00000241990 | ENST00000445441 | MAP3K3 | ENSG00000198909 | ENST00000361357 | -0.1092 | 1 | - | UCEC | | ENSG00000241990 | ENST00000445441 | MAP3K3 | ENSG00000198909 | ENST00000577395 | -0.1825 | 59 | - | UCEC | | ENSG00000241990 | ENST00000445441 | MAP3K3 | ENSG00000198909 | ENST00000577597 | -0.1018 | 1 | - | UCEC | | ENSG00000241990 | ENST00000416202 | PCDHGC3 | ENSG00000240184 | ENST00000611950 | -0.2102 | 20 | - | UCEC | | ENSG00000241990 | ENST00000416202 | PCDHGC3 | ENSG00000240184 | ENST00000617222 | -0.2942 | 115 | - | UCEC | | ENSG00000241990 | ENST00000451166 | PCDHGC3 | ENSG00000240184 | ENST00000611950 | -0.2503 | 245 | - | UCEC | | ENSG00000241990 | ENST00000451166 | PCDHGC3 | ENSG00000240184 | ENST00000617222 | -0.2844 | 97 | - | UCEC | | ENSG00000241990 | ENST00000445441 | PCDHGC3 | ENSG00000240184 | ENST00000611950 | -0.1379 | 86 | - | UCEC | | ENSG00000241990 | ENST00000445441 | PCDHGC3 | ENSG00000240184 | ENST00000617222 | -0.3471 | 55 | - | UCEC | | ENSG00000241990 | ENST00000416202 | KIF13A | ENSG00000137177 | ENST00000259711 | -0.1342 | 1 | - | UCEC | | ENSG00000241990 | ENST00000416202 | KIF13A | ENSG00000137177 | ENST00000378843 | -0.1342 | 1 | - | UCEC | | ENSG00000241990 | ENST00000416202 | KIF13A | ENSG00000137177 | ENST00000378826 | -0.1342 | 1 | - | UCEC | | ENSG00000241990 | ENST00000445441 | KIF13A | ENSG00000137177 | ENST00000378814 | -0.1093 | 1 | - | UCEC | | ENSG00000241990 | ENST00000445441 | KIF13A | ENSG00000137177 | ENST00000502297 | -0.1093 | 1 | - | UCEC | | ENSG00000241990 | ENST00000416202 | SMG6 | ENSG00000070366 | ENST00000263073 | -0.1055 | 1 | - | UCEC | | ENSG00000241990 | ENST00000416202 | SMG6 | ENSG00000070366 | ENST00000354901 | -0.1055 | 1 | - | UCEC | | ENSG00000241990 | ENST00000416202 | SMG6 | ENSG00000070366 | ENST00000536871 | -0.2497 | 138 | - | UCEC | | ENSG00000241990 | ENST00000451166 | SMG6 | ENSG00000070366 | ENST00000536871 | -0.2170 | 108 | - | UCEC | | ENSG00000241990 | ENST00000445441 | SMG6 | ENSG00000070366 | ENST00000536871 | -0.1549 | 10 | - | UCEC |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types | | ENSG00000241990 | PRR34-AS1,hsa-mir-152,RHOT2 | KICH,CHOL,PRAD,PAAD,SARC | | ENSG00000241990 | PRR34-AS1,hsa-mir-130a,HTATIP2 | KICH,GBM,MESO,SARC,THYM | | ENSG00000241990 | PRR34-AS1,hsa-mir-130a,TMEM140 | KICH,GBM,UCS,SARC,THYM | | ENSG00000241990 | PRR34-AS1,hsa-mir-125b-1,PSMA5 | CHOL,MESO,UCS,THYM,LIHC | | ENSG00000241990 | PRR34-AS1,hsa-mir-125b-1,CHAF1B | CHOL,MESO,SARC,THYM,LIHC | | ENSG00000241990 | PRR34-AS1,hsa-mir-125b-1,NFKBIE | CHOL,MESO,UCS,THYM,LIHC | | ENSG00000241990 | PRR34-AS1,hsa-mir-125b-1,GBP2 | CHOL,MESO,UCS,SARC,THYM,LIHC | | ENSG00000241990 | PRR34-AS1,hsa-mir-125b-1,ATP5MF | CHOL,MESO,UCS,THYM,LIHC | | ENSG00000241990 | PRR34-AS1,hsa-mir-125b-2,VASP | CHOL,MESO,SARC,THYM,LIHC | | ENSG00000241990 | PRR34-AS1,hsa-mir-125b-2,NFKBIE | CHOL,MESO,UCS,THYM,LIHC | | ENSG00000241990 | PRR34-AS1,hsa-mir-125b-2,PSMA5 | CHOL,MESO,UCS,THYM,LIHC | | ENSG00000241990 | PRR34-AS1,hsa-mir-125b-2,TUBG1 | CHOL,MESO,SARC,THYM,LIHC | | ENSG00000241990 | PRR34-AS1,hsa-mir-125b-2,CHAF1B | CHOL,MESO,SARC,THYM,LIHC | | ENSG00000241990 | PRR34-AS1,hsa-mir-125b-2,GBP2 | CHOL,MESO,UCS,SARC,THYM,LIHC | | ENSG00000241990 | PRR34-AS1,hsa-let-7c,FEN1 | CHOL,UVM,GBM,SARC,LIHC | | ENSG00000241990 | PRR34-AS1,hsa-let-7c,CNPY2 | CHOL,UVM,GBM,PAAD,LIHC | | ENSG00000241990 | PRR34-AS1,hsa-let-7c,TMEM251 | CHOL,UVM,GBM,SARC,LIHC | | ENSG00000241990 | PRR34-AS1,hsa-let-7c,TBL2 | CHOL,UVM,GBM,PAAD,LIHC |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000241990.4 | ENST00000416202.4 | 61 | 58 | 243 | | ENSG00000241990.4 | ENST00000451166.4 | 68 | 204 | 1 | | ENSG00000241990.4 | ENST00000445441.1 | 74 | 69 | 293 |
|
