lncRNA targets the enhancer region and positively regulates the gene expression. |
Only predicted by TDF | PLS1 | Exist in public source | NA |
lncRNA targets the promoter region and positively regulates the gene expression. |
lncRNA targets the promoter region and negatively regulates the gene expression. |
lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
lncRNA targets the skipped exon region. | -lncRNA and exonskipping events are positively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
-lncRNA and exonskipping events are negatively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF |
lncRNA targets by miRNA. |
LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
RNA A-to-I editing events in lncRNA. |
LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
Edited-associated DElncRNAs in cancer. |
LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
lncRNA regulates differentially expressed genes by function as enhancer. |
LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation | ENSG00000241158 | ENSG00000120756 | PLS1 | KICH,KICH,KIRC,KIRC,KIRP,KIRP | | KICH,KICH |
LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | ENSG00000241158.4 | ENST00000626014.1 | 79 | 199 | 438 | ENSG00000241158.4 | ENST00000470447.1 | 90 | 209 | 481 | ENSG00000241158.4 | ENST00000493124.2 | 82 | 201 | 449 | ENSG00000241158.4 | ENST00000626280.1 | 79 | 227 | 466 | ENSG00000241158.4 | ENST00000625328.1 | 75 | 92 | 319 | ENSG00000241158.4 | ENST00000594810.2 | 64 | 2 | 196 | ENSG00000241158.4 | ENST00000474313.1 | 91 | 1358 | 1633 | ENSG00000241158.4 | ENST00000601022.1 | 48 | 417 | 560 | ENSG00000241158.4 | ENST00000625433.1 | 32 | 169 | 71 | ENSG00000241158.4 | ENST00000471990.3 | 43 | 397 | 525 | ENSG00000241158.4 | ENST00000597944.1 | 76 | 158 | 388 | ENSG00000241158.4 | ENST00000627227.1 | 76 | 528 | 298 | ENSG00000241158.4 | ENST00000466225.3 | 58 | 191 | 367 | ENSG00000241158.4 | ENST00000630336.1 | 69 | 191 | 400 | ENSG00000241158.4 | ENST00000625396.1 | 61 | 191 | 376 | ENSG00000241158.4 | ENST00000628461.1 | 58 | 191 | 367 | ENSG00000241158.4 | ENST00000625636.1 | 65 | 173 | 370 | ENSG00000241158.4 | ENST00000631269.1 | 61 | 166 | 351 | ENSG00000241158.4 | ENST00000625832.1 | 49 | 128 | 277 |
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