lncRNA targets the enhancer region and positively regulates the gene expression. |
lncRNA targets the promoter region and positively regulates the gene expression. |
lncRNA targets the promoter region and negatively regulates the gene expression. |
lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
Only predicted by lncTar | VAMP8,MRPS15,HCFC1R1,PYCARD,NDUFC2,RHOC,VKORC1,GSTO1,IFITM2,DDT,RNF181,TMSB10,AGTRAP,IFITM3 | Exist in public source | NA |
lncRNA targets the skipped exon region. | -lncRNA and exonskipping events are positively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | ENSG00000240449 | ENST00000488310 | exon_skip_423795 | chr4:55888887-55888932 | -6.01 | -0.1669 | EXOC1 | ENST00000346134,ENST00000381295 | In-frame |
-lncRNA and exonskipping events are negatively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF |
lncRNA targets by miRNA. |
LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
RNA A-to-I editing events in lncRNA. |
LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
Edited-associated DElncRNAs in cancer. |
LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
lncRNA regulates differentially expressed genes by function as enhancer. |
LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation | ENSG00000240449 | ENST00000488310 | IFITM3 | ENSG00000142089 | ENST00000399808 | -0.1191 | 17 | - | KICH | ENSG00000240449 | ENST00000488310 | IFITM3 | ENSG00000142089 | ENST00000531688 | -0.1704 | 1 | - | KICH | ENSG00000240449 | ENST00000488310 | IFITM3 | ENSG00000142089 | ENST00000602735 | -0.3103 | 121 | - | KICH | ENSG00000240449 | ENST00000488310 | IFITM3 | ENSG00000142089 | ENST00000526811 | -0.3103 | 121 | - | KICH | ENSG00000240449 | ENST00000488310 | RHOC | ENSG00000155366 | ENST00000369633 | -0.1711 | 1 | - | KICH | ENSG00000240449 | ENST00000488310 | RHOC | ENSG00000155366 | ENST00000369642 | -0.1711 | 1 | - | KICH | ENSG00000240449 | ENST00000488310 | RHOC | ENSG00000155366 | ENST00000285735 | -0.1711 | 1 | - | KICH | ENSG00000240449 | ENST00000488310 | RHOC | ENSG00000155366 | ENST00000369638 | -0.1711 | 1 | - | KICH | ENSG00000240449 | ENST00000488310 | RHOC | ENSG00000155366 | ENST00000369637 | -0.1716 | 4 | - | KICH | ENSG00000240449 | ENST00000488310 | RHOC | ENSG00000155366 | ENST00000369636 | -0.2230 | 16 | - | KICH | ENSG00000240449 | ENST00000488310 | RHOC | ENSG00000155366 | ENST00000369632 | -0.7540 | 347 | - | KICH | ENSG00000240449 | ENST00000488310 | RHOC | ENSG00000155366 | ENST00000528831 | -0.1184 | 19 | - | KICH | ENSG00000240449 | ENST00000488310 | IFITM2 | ENSG00000185201 | ENST00000533141 | -0.3103 | 121 | - | KICH | ENSG00000240449 | ENST00000488310 | IFITM2 | ENSG00000185201 | ENST00000616316 | -0.1251 | 415 | - | KICH | ENSG00000240449 | ENST00000488310 | IFITM2 | ENSG00000185201 | ENST00000399817 | -0.1251 | 415 | - | KICH | ENSG00000240449 | ENST00000488310 | IFITM2 | ENSG00000185201 | ENST00000602569 | -0.1251 | 415 | - | KICH | ENSG00000240449 | ENST00000488310 | IFITM2 | ENSG00000185201 | ENST00000399815 | -0.1226 | 411 | - | KICH |
lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | ENSG00000240449.1 | ENST00000488310.1 | 105 | 51 | 368 |
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