lncRNA targets the enhancer region and positively regulates the gene expression. |
lncRNA targets the promoter region and positively regulates the gene expression. |
lncRNA targets the promoter region and negatively regulates the gene expression. |
lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
Only predicted by lncTar | RCC2,FLII,COPB2,PRKD2,GAB2,CBL,MED1,PARN,SEPTIN9,PTBP1,USP9X,MYH9,DPF2,TMEM127,TAF1,RALGAPB,ACTN4,DENND2B,RNF40,MED13,IQGAP1,DHX38,SMARCC1,CHD4,PTPN11,SH3PXD2B,ASXL1,KIAA0100,WDR1,SMARCA4,AMBRA1,GANAB,DDB1,FNDC3B,MAP4K4,VAT1,CSTF2,SRCAP,HEATR6,ZNFX1,CLEC16A,ASXL2,ABCD1 | Exist in public source | NA |
lncRNA targets the skipped exon region. | -lncRNA and exonskipping events are positively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
-lncRNA and exonskipping events are negatively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF |
lncRNA targets by miRNA. |
LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
RNA A-to-I editing events in lncRNA. |
LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
Edited-associated DElncRNAs in cancer. |
LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
lncRNA regulates differentially expressed genes by function as enhancer. |
LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation | ENSG00000239911 | ENST00000464464 | KIAA0100 | ENSG00000007202 | ENST00000528896 | -0.1432 | 1 | CHOL | - | ENSG00000239911 | ENST00000464464 | KIAA0100 | ENSG00000007202 | ENST00000544884 | -0.1409 | 56 | CHOL | - | ENSG00000239911 | ENST00000464464 | KIAA0100 | ENSG00000007202 | ENST00000389003 | -0.1707 | 60 | CHOL | - | ENSG00000239911 | ENST00000464464 | GAB2 | ENSG00000033327 | ENST00000340149 | -0.1036 | 1 | CHOL,KICH | - | ENSG00000239911 | ENST00000464464 | GAB2 | ENSG00000033327 | ENST00000361507 | -0.1036 | 1 | CHOL,KICH | - | ENSG00000239911 | ENST00000464464 | CLEC16A | ENSG00000038532 | ENST00000409790 | -0.1007 | 1 | KICH | - | ENSG00000239911 | ENST00000464464 | FNDC3B | ENSG00000075420 | ENST00000423424 | -0.3675 | 339 | GBM | - | ENSG00000239911 | ENST00000464464 | FNDC3B | ENSG00000075420 | ENST00000416957 | -1.6000 | 98 | GBM | - | ENSG00000239911 | ENST00000464464 | PRKD2 | ENSG00000105287 | ENST00000597390 | -0.1028 | 1 | GBM,CHOL | - | ENSG00000239911 | ENST00000464464 | PRKD2 | ENSG00000105287 | ENST00000291281 | -0.1545 | 1 | GBM,CHOL | - | ENSG00000239911 | ENST00000464464 | PRKD2 | ENSG00000105287 | ENST00000433867 | -0.1545 | 1 | GBM,CHOL | - | ENSG00000239911 | ENST00000464464 | PRKD2 | ENSG00000105287 | ENST00000600194 | -0.1545 | 1 | GBM,CHOL | - | ENSG00000239911 | ENST00000464464 | PRKD2 | ENSG00000105287 | ENST00000595515 | -0.4810 | 352 | GBM,CHOL | - | ENSG00000239911 | ENST00000464464 | PRKD2 | ENSG00000105287 | ENST00000597641 | -0.1082 | 1 | GBM,CHOL | - | ENSG00000239911 | ENST00000464464 | VAT1 | ENSG00000108828 | ENST00000587173 | -0.1667 | 250 | GBM | - | ENSG00000239911 | ENST00000464464 | VAT1 | ENSG00000108828 | ENST00000420567 | -0.1667 | 250 | GBM | - | ENSG00000239911 | ENST00000464464 | VAT1 | ENSG00000108828 | ENST00000587147 | -0.1010 | 111 | GBM | - | ENSG00000239911 | ENST00000464464 | CBL | ENSG00000110395 | ENST00000264033 | -0.1090 | 1 | CHOL | - | ENSG00000239911 | ENST00000464464 | SMARCA4 | ENSG00000127616 | ENST00000586985 | -0.1209 | 180 | CHOL | - | ENSG00000239911 | ENST00000464464 | IQGAP1 | ENSG00000140575 | ENST00000560373 | -0.2770 | 133 | GBM,CHOL | - | ENSG00000239911 | ENST00000467458 | KIAA0100 | ENSG00000007202 | ENST00000544884 | -0.1684 | 89 | CHOL | - | ENSG00000239911 | ENST00000467458 | KIAA0100 | ENSG00000007202 | ENST00000389003 | -0.1684 | 89 | CHOL | - | ENSG00000239911 | ENST00000467458 | CLEC16A | ENSG00000038532 | ENST00000428742 | -0.1021 | 241 | KICH | - | ENSG00000239911 | ENST00000467458 | CLEC16A | ENSG00000038532 | ENST00000436973 | -0.1141 | 233 | KICH | - | ENSG00000239911 | ENST00000467458 | FNDC3B | ENSG00000075420 | ENST00000423424 | -0.1249 | 814 | GBM | - | ENSG00000239911 | ENST00000467458 | FNDC3B | ENSG00000075420 | ENST00000416957 | -1.6050 | 69 | GBM | - | ENSG00000239911 | ENST00000467458 | ABCD1 | ENSG00000101986 | ENST00000370129 | -0.1060 | 26 | GBM,KICH | - | ENSG00000239911 | ENST00000467458 | PRKD2 | ENSG00000105287 | ENST00000601806 | -0.1172 | 227 | GBM,CHOL | - | ENSG00000239911 | ENST00000467458 | PRKD2 | ENSG00000105287 | ENST00000291281 | -0.1207 | 237 | GBM,CHOL | - | ENSG00000239911 | ENST00000467458 | PRKD2 | ENSG00000105287 | ENST00000433867 | -0.1606 | 227 | GBM,CHOL | - | ENSG00000239911 | ENST00000467458 | PRKD2 | ENSG00000105287 | ENST00000600194 | -0.1606 | 227 | GBM,CHOL | - | ENSG00000239911 | ENST00000467458 | PRKD2 | ENSG00000105287 | ENST00000595515 | -1.0457 | 843 | GBM,CHOL | - | ENSG00000239911 | ENST00000467458 | PRKD2 | ENSG00000105287 | ENST00000597641 | -0.1345 | 58 | GBM,CHOL | - | ENSG00000239911 | ENST00000467458 | VAT1 | ENSG00000108828 | ENST00000587173 | -0.1667 | 523 | GBM | - | ENSG00000239911 | ENST00000467458 | VAT1 | ENSG00000108828 | ENST00000420567 | -0.1385 | 194 | GBM | - | ENSG00000239911 | ENST00000467458 | VAT1 | ENSG00000108828 | ENST00000587147 | -0.1091 | 151 | GBM | - | ENSG00000239911 | ENST00000467458 | SMARCA4 | ENSG00000127616 | ENST00000586985 | -0.1209 | 453 | CHOL | - | ENSG00000239911 | ENST00000467458 | IQGAP1 | ENSG00000140575 | ENST00000560373 | -4.1500 | 29 | GBM,CHOL | - | ENSG00000239911 | ENST00000464464 | DENND2B | ENSG00000166444 | ENST00000531060 | -0.8562 | 294 | KICH | - | ENSG00000239911 | ENST00000464464 | ASXL1 | ENSG00000171456 | ENST00000497249 | -0.1331 | 300 | KICH | - | ENSG00000239911 | ENST00000464464 | SMARCC1 | ENSG00000173473 | ENST00000454240 | -0.1151 | 80 | GBM | - | ENSG00000239911 | ENST00000464464 | SH3PXD2B | ENSG00000174705 | ENST00000519643 | -0.1128 | 116 | GBM,CHOL | - | ENSG00000239911 | ENST00000464464 | RCC2 | ENSG00000179051 | ENST00000375433 | -0.1137 | 168 | GBM,CHOL | - | ENSG00000239911 | ENST00000464464 | SEPTIN9 | ENSG00000184640 | ENST00000427177 | -0.1028 | 1 | CHOL | - | ENSG00000239911 | ENST00000464464 | SEPTIN9 | ENSG00000184640 | ENST00000591198 | -0.1028 | 1 | CHOL | - | ENSG00000239911 | ENST00000464464 | SEPTIN9 | ENSG00000184640 | ENST00000590576 | -0.1030 | 1 | CHOL | - | ENSG00000239911 | ENST00000464464 | SEPTIN9 | ENSG00000184640 | ENST00000431235 | -0.1028 | 1 | CHOL | - | ENSG00000239911 | ENST00000464464 | SEPTIN9 | ENSG00000184640 | ENST00000449803 | -0.1028 | 1 | CHOL | - | ENSG00000239911 | ENST00000464464 | SEPTIN9 | ENSG00000184640 | ENST00000329047 | -0.1028 | 1 | CHOL | - | ENSG00000239911 | ENST00000464464 | SEPTIN9 | ENSG00000184640 | ENST00000588575 | -0.1848 | 275 | CHOL | - | ENSG00000239911 | ENST00000464464 | SEPTIN9 | ENSG00000184640 | ENST00000588690 | -0.1028 | 1 | CHOL | - | ENSG00000239911 | ENST00000464464 | SEPTIN9 | ENSG00000184640 | ENST00000423034 | -0.1028 | 1 | CHOL | - | ENSG00000239911 | ENST00000464464 | SEPTIN9 | ENSG00000184640 | ENST00000427674 | -0.1028 | 1 | CHOL | - | ENSG00000239911 | ENST00000464464 | SEPTIN9 | ENSG00000184640 | ENST00000592420 | -0.1077 | 1 | CHOL | - | ENSG00000239911 | ENST00000464464 | SEPTIN9 | ENSG00000184640 | ENST00000585930 | -0.1064 | 83 | CHOL | - | ENSG00000239911 | ENST00000464464 | SEPTIN9 | ENSG00000184640 | ENST00000541152 | -0.1028 | 1 | CHOL | - | ENSG00000239911 | ENST00000464464 | SEPTIN9 | ENSG00000184640 | ENST00000591088 | -0.1028 | 1 | CHOL | - | ENSG00000239911 | ENST00000464464 | SEPTIN9 | ENSG00000184640 | ENST00000592951 | -0.1028 | 1 | CHOL | - | ENSG00000239911 | ENST00000464464 | SEPTIN9 | ENSG00000184640 | ENST00000590917 | -0.2577 | 178 | CHOL | - | ENSG00000239911 | ENST00000464464 | SEPTIN9 | ENSG00000184640 | ENST00000427180 | -0.1028 | 1 | CHOL | - | ENSG00000239911 | ENST00000467458 | DENND2B | ENSG00000166444 | ENST00000526099 | -0.1061 | 150 | KICH | - | ENSG00000239911 | ENST00000467458 | DENND2B | ENSG00000166444 | ENST00000534278 | -0.1231 | 136 | KICH | - | ENSG00000239911 | ENST00000467458 | DENND2B | ENSG00000166444 | ENST00000531060 | -3.8300 | 862 | KICH | - | ENSG00000239911 | ENST00000467458 | ASXL1 | ENSG00000171456 | ENST00000497249 | -0.1438 | 800 | KICH | - | ENSG00000239911 | ENST00000467458 | SMARCC1 | ENSG00000173473 | ENST00000454240 | -0.1189 | 190 | GBM | - | ENSG00000239911 | ENST00000467458 | SH3PXD2B | ENSG00000174705 | ENST00000519643 | -0.1262 | 307 | GBM,CHOL | - | ENSG00000239911 | ENST00000467458 | SEPTIN9 | ENSG00000184640 | ENST00000591833 | -0.1025 | 133 | CHOL | - | ENSG00000239911 | ENST00000467458 | SEPTIN9 | ENSG00000184640 | ENST00000591198 | -0.1462 | 1 | CHOL | - | ENSG00000239911 | ENST00000467458 | SEPTIN9 | ENSG00000184640 | ENST00000588575 | -0.1952 | 51 | CHOL | - | ENSG00000239911 | ENST00000467458 | SEPTIN9 | ENSG00000184640 | ENST00000585930 | -0.1128 | 263 | CHOL | - | ENSG00000239911 | ENST00000467458 | SEPTIN9 | ENSG00000184640 | ENST00000591088 | -0.1420 | 1 | CHOL | - | ENSG00000239911 | ENST00000467458 | SEPTIN9 | ENSG00000184640 | ENST00000592951 | -0.1489 | 1 | CHOL | - | ENSG00000239911 | ENST00000467458 | SEPTIN9 | ENSG00000184640 | ENST00000590917 | -0.2577 | 451 | CHOL | - |
lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | ENSG00000239911.2 | ENST00000464464.1 | 79 | 383 | 619 | ENSG00000239911.2 | ENST00000467458.2 | 80 | 240 | 1 |
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