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lncRNA: ENSG00000237976

Summary for RFX5-AS1

Gene summary

Gene information	Ensembl ID	ENSG00000237976
	Gene symbol	RFX5-AS1
	Gene name	RFX5 antisense RNA 1
	HGNC	40503
	Entrez ID
	Gene type	antisense
	Synonyms	01q21.3\|RFX5-AS1\|RP11-126K1.6
	UniProtAcc

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Structure and expression level for RFX5-AS1

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000237976	1.832380e+02	2.718162e+00	3.429862e-01	7.924988e+00	2.280000e-15	1.010000e-13	UP	GBM
ENSG00000237976	5.617286e+01	1.802976e+00	1.805566e-01	9.985655e+00	1.760000e-23	3.710000e-22	UP	UCEC

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000237976	3.094693e-01	1.707033e-14	UCEC	1.457691e-13

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lncRNA-Protein interaction for RFX5-AS1

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

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lncRNA-DNA interaction for RFX5-AS1

lncRNA targets the enhancer region and positively regulates the gene expression.

lncRNA targets the promoter region and positively regulates the gene expression.

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for RFX5-AS1

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

CNOT1,PREPL,IDH3A,GSK3B,VPS26C,ITSN1,UTP20,RNF123,NT5C2,ZMYND11,REV1,FRS2,BECN1,DUSP3,KHNYN,ARHGAP26,SMARCC2,QTRT2,TACC1,SECISBP2L,SEPTIN10,SNX6,SPIRE1,LARP1,NPEPPS,KIAA1109,PTPN11,RIOK3,MCM3AP,TBC1D15,ITGB1,PLEKHB2,HECTD1,CUL4A,SUCLG2,PDXDC1,PKN2,KLHL21,FNDC3A,DNAJC11,NR2C2,VPS13B,SEC24B,CLTC,ANKRD11,AP1AR,MFN1,ATRN,ATP2A2,FAM91A1,ALG12,WASF2,SON,KMT2D,CTNNB1,NBR1,VGLL4,FKTN,NUMB,RIC1,CCDC47,PRRC2C,PDPK1,KTN1,M6PR,C5orf24,RAPGEF2,AP3D1,ACBD5,PKD2,APAF1,WWP1,CDYL,RNF111,PCNX1,SNRK,USP32,IQGAP1,RAB29,ACOX1,TMCO3,SMARCA2,KIF13A,SLMAP,RNF31,CLIP1,CMTR2,ARNT,SNTB2,USP12,FBXO11,SLC25A24,ASPH,MINK1,STK24,UBE3C,MKLN1,C9orf64,ARHGAP5,CLCC1,BCL2L2,ITSN2,ASXL2,THAP6,MFSD14A,ROCK1,RNF169,KLF13,UBN1,POLR2B,COPB2,WIPF2,TBC1D2B,UTRN,RAB11FIP1,BAZ2A,SSR1,LARP4,NIPA2,MAST4,MYOF,USP9X,ROCK2,HSPG2,PDLIM5,ASH1L,DYNC1LI2,SLC35A5,RAB18,MIDEAS,RASA1,TNS1,DNAJC13,TGFBRAP1,ARL1,RREB1,C16orf70,VPS50,MED13,WNK1,WDR7,UBXN4,PHC3,COG6,AZI2,TAF6,ATP11A,GOLGA2,DOCK9,SYNJ1,PPARA,TRIP12,GPATCH8,TBC1D23,AKAP10,PDCD6IP,ZC3H7B,GTF2A1,NPC1,MPHOSPH8,SEC23B,NFAT5,DHX15,EIF3L,HBP1,NEK7,CD46,SPTLC1,RO60,CUL2,SMG8,CAB39,ATP1A1,GOSR1,TTC37,PRKAR1A,BIRC6,CALU,DCAF17,ELF1,BACH1,MOSPD2,SPART,AFF1,PIGO,ZZEF1,GCC2,TAF2,OSMR,MRTFB,CAST,TEX2,SNX18,ITFG1,C6orf89,HEATR5A,ITCH,CALCOCO2,RUSF1,IPO7,CANX,FNDC3B,SPG11,DHX36,FYCO1,ZDHHC7,IBTK,NDUFS1,SLC39A6,NOMO2,SCAF11

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

ORF mutation

-lncRNA and exonskipping events are negatively correlated.

lncRNA and exonskipping events negative correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	LOF
ENSG00000237976	ENST00000455503	exon_skip_445390	chr5:150403120-150403312	-20.57	-0.2188	CD74	ENST00000009530	In-frame

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

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Variants for RFX5-AS1

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID

PC Gene ID

PC Gene Name

Positive correlated cancers

Cancer with PC gene up-regulation

Cancer with PC gene down-regulation

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID	LncRNA ENST ID	PC Gene Name	PC Gene ID	PC ENST ID	dG	nDG	Cancer with PC gene up-regulation	Cancer with PC gene Down-regulation
ENSG00000237976	ENST00000455503	GCC2	ENSG00000135968	ENST00000614209	-0.2264	376	-	GBM
ENSG00000237976	ENST00000455503	TEX2	ENSG00000136478	ENST00000583501	-0.2005	39	-	GBM
ENSG00000237976	ENST00000455503	KIAA1109	ENSG00000138688	ENST00000419325	-0.3269	204	-	GBM
ENSG00000237976	ENST00000455503	KIAA1109	ENSG00000138688	ENST00000442707	-0.5767	177	-	GBM
ENSG00000237976	ENST00000455503	PDPK1	ENSG00000140992	ENST00000441549	-0.2972	1	-	GBM
ENSG00000237976	ENST00000455503	PDPK1	ENSG00000140992	ENST00000492021	-0.1084	1	-	GBM
ENSG00000237976	ENST00000455503	PDPK1	ENSG00000140992	ENST00000389224	-0.2024	1	-	GBM
ENSG00000237976	ENST00000455503	NPC1	ENSG00000141458	ENST00000586150	-0.4912	48	-	GBM
ENSG00000237976	ENST00000455503	MINK1	ENSG00000141503	ENST00000577021	-0.1020	1	-	GBM
ENSG00000237976	ENST00000455503	MINK1	ENSG00000141503	ENST00000576037	-0.1435	1	-	GBM
ENSG00000237976	ENST00000455503	ARHGAP26	ENSG00000145819	ENST00000424007	-0.1642	1	-	GBM
ENSG00000237976	ENST00000455503	LARP1	ENSG00000155506	ENST00000518892	-0.1714	1	-	GBM
ENSG00000237976	ENST00000455503	LARP1	ENSG00000155506	ENST00000518677	-0.1077	1	-	GBM
ENSG00000237976	ENST00000455503	RNF123	ENSG00000164068	ENST00000327697	-0.1044	1	-	GBM
ENSG00000237976	ENST00000455503	RNF123	ENSG00000164068	ENST00000432042	-0.1660	117	-	GBM
ENSG00000237976	ENST00000455503	RNF123	ENSG00000164068	ENST00000443204	-0.1336	1	-	GBM
ENSG00000237976	ENST00000455503	RNF123	ENSG00000164068	ENST00000433785	-0.1044	1	-	GBM
ENSG00000237976	ENST00000455503	ANKRD11	ENSG00000167522	ENST00000563291	-0.2138	1	-	GBM
ENSG00000237976	ENST00000455503	KMT2D	ENSG00000167548	ENST00000526209	-0.1420	3	-	GBM
ENSG00000237976	ENST00000455503	USP32	ENSG00000170832	ENST00000300896	-0.1194	1	-	GBM
ENSG00000237976	ENST00000455503	USP32	ENSG00000170832	ENST00000592339	-0.1194	1	-	GBM
ENSG00000237976	ENST00000455503	USP32	ENSG00000170832	ENST00000593071	-0.1194	3	-	GBM
ENSG00000237976	ENST00000455503	USP32	ENSG00000170832	ENST00000589552	-0.1038	1	-	GBM
ENSG00000237976	ENST00000455503	USP32	ENSG00000170832	ENST00000590297	-0.1113	37	-	GBM
ENSG00000237976	ENST00000455503	MRTFB	ENSG00000186260	ENST00000574045	-0.1750	283	-	GBM
ENSG00000237976	ENST00000455503	MRTFB	ENSG00000186260	ENST00000571770	-0.1758	1	-	GBM
ENSG00000237976	ENST00000455503	MPHOSPH8	ENSG00000196199	ENST00000414242	-0.1298	374	-	GBM
ENSG00000237976	ENST00000455503	ITSN2	ENSG00000198399	ENST00000449392	-0.1169	39	-	GBM
ENSG00000237976	ENST00000455503	MAST4	ENSG00000069020	ENST00000406374	-0.2257	584	-	GBM,UCEC
ENSG00000237976	ENST00000455503	MAST4	ENSG00000069020	ENST00000432817	-0.1718	29	-	GBM,UCEC
ENSG00000237976	ENST00000455503	MAST4	ENSG00000069020	ENST00000434115	-0.2257	584	-	GBM,UCEC
ENSG00000237976	ENST00000455503	MAST4	ENSG00000069020	ENST00000411628	-0.1718	29	-	GBM,UCEC
ENSG00000237976	ENST00000455503	MAST4	ENSG00000069020	ENST00000403666	-0.1248	26	-	GBM,UCEC
ENSG00000237976	ENST00000455503	MAST4	ENSG00000069020	ENST00000450827	-0.1762	29	-	GBM,UCEC
ENSG00000237976	ENST00000455503	MAST4	ENSG00000069020	ENST00000407621	-0.2257	584	-	GBM,UCEC
ENSG00000237976	ENST00000455503	MAST4	ENSG00000069020	ENST00000447738	-0.1446	1	-	GBM,UCEC
ENSG00000237976	ENST00000455503	MAST4	ENSG00000069020	ENST00000443808	-0.1248	26	-	GBM,UCEC
ENSG00000237976	ENST00000455503	DOCK9	ENSG00000088387	ENST00000627024	-0.1430	1	-	GBM
ENSG00000237976	ENST00000455503	DOCK9	ENSG00000088387	ENST00000427887	-0.1430	1	-	GBM
ENSG00000237976	ENST00000455503	ROCK2	ENSG00000134318	ENST00000401753	-0.1162	1	-	GBM,UCEC
ENSG00000237976	ENST00000455503	TACC1	ENSG00000147526	ENST00000520340	-0.1549	540	-	GBM,UCEC
ENSG00000237976	ENST00000455503	TACC1	ENSG00000147526	ENST00000518415	-0.1507	4	-	GBM,UCEC
ENSG00000237976	ENST00000455503	TACC1	ENSG00000147526	ENST00000520973	-0.1203	1	-	GBM,UCEC
ENSG00000237976	ENST00000455503	TACC1	ENSG00000147526	ENST00000521866	-0.1507	1	-	GBM,UCEC
ENSG00000237976	ENST00000455503	USP12	ENSG00000152484	ENST00000612674	-0.1114	1	-	GBM
ENSG00000237976	ENST00000455503	NOMO2	ENSG00000185164	ENST00000330537	-0.1466	1	-	GBM
ENSG00000237976	ENST00000455503	NOMO2	ENSG00000185164	ENST00000620440	-0.1466	1	-	GBM
ENSG00000237976	ENST00000455503	NOMO2	ENSG00000185164	ENST00000381474	-0.2596	66	-	GBM
ENSG00000237976	ENST00000455503	NOMO2	ENSG00000185164	ENST00000622306	-0.1466	1	-	GBM
ENSG00000237976	ENST00000455503	NOMO2	ENSG00000185164	ENST00000621364	-0.2331	62	-	GBM
ENSG00000237976	ENST00000455503	NOMO2	ENSG00000185164	ENST00000543392	-0.2982	73	-	GBM
ENSG00000237976	ENST00000455503	NOMO2	ENSG00000185164	ENST00000567831	-0.2013	1	-	GBM
ENSG00000237976	ENST00000455503	NOMO2	ENSG00000185164	ENST00000569051	-0.1127	1	-	GBM
ENSG00000237976	ENST00000455503	ITSN1	ENSG00000205726	ENST00000399353	-0.3154	15	-	GBM
ENSG00000237976	ENST00000455503	ITSN1	ENSG00000205726	ENST00000399367	-0.1211	1	-	GBM
ENSG00000237976	ENST00000455503	ITSN1	ENSG00000205726	ENST00000399338	-0.2709	15	-	GBM
ENSG00000237976	ENST00000455503	ITSN1	ENSG00000205726	ENST00000420666	-0.1627	436	-	GBM
ENSG00000237976	ENST00000455503	SMARCA2	ENSG00000080503	ENST00000382186	-2.0500	587	-	GBM,UCEC
ENSG00000237976	ENST00000455503	ATRN	ENSG00000088812	ENST00000446916	-0.1254	122	-	GBM
ENSG00000237976	ENST00000455503	WDR7	ENSG00000091157	ENST00000589935	-0.1866	24	-	GBM
ENSG00000237976	ENST00000455503	HECTD1	ENSG00000092148	ENST00000554471	-0.1053	4	-	GBM
ENSG00000237976	ENST00000455503	PCNX1	ENSG00000100731	ENST00000555780	-0.1372	6	-	GBM
ENSG00000237976	ENST00000455503	DUSP3	ENSG00000108861	ENST00000590753	-0.1174	1	-	GBM
ENSG00000237976	ENST00000455503	PRKAR1A	ENSG00000108946	ENST00000586397	-0.1826	1	-	GBM
ENSG00000237976	ENST00000455503	C16orf70	ENSG00000125149	ENST00000569277	-0.1346	1	-	GBM
ENSG00000237976	ENST00000455503	BCL2L2	ENSG00000129473	ENST00000556599	-0.2767	41	-	GBM,UCEC

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID

lncRNA ENST ID

length(AA)

start at transcript

end at transcript

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential