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lncRNA: ENSG00000237943

Summary for PRKCQ-AS1

Gene summary

Gene information	Ensembl ID	ENSG00000237943
	Gene symbol	PRKCQ-AS1
	Gene name	PRKCQ antisense RNA 1
	HGNC	44689
	Entrez ID	439949
	Gene type	processed_transcript
	Synonyms	PRKCQ-AS1\|10p14
	UniProtAcc

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Structure and expression level for PRKCQ-AS1

AS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure.

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000237943	1.744849e+02	-2.084298e+00	4.375978e-01	-4.763045e+00	1.910000e-06	1.470000e-05	DOWN	GBM
ENSG00000237943	2.547369e+02	-1.587209e+00	1.182412e-01	-1.342349e+01	4.400000e-41	7.370000e-40	DOWN	KIRC
ENSG00000237943	3.111789e+02	-2.287353e+00	2.984285e-01	-7.664660e+00	1.790000e-14	1.690000e-13	DOWN	KICH

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000237943	-6.085446e-01	2.513150e-10	KICH	2.813332e-09
ENSG00000237943	-3.668546e-01	1.796720e-19	THCA	1.893253e-17

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lncRNA-Protein interaction for PRKCQ-AS1

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000237943	ENST00000623160	PRKCQ-AS1	ENSG00000197857	ZNF44	11.33	92.2948	P15621	TF	NA
ENSG00000237943	ENST00000623160	PRKCQ-AS1	ENSG00000198429	ZNF69	3.69	91.0996	Q9UC07	TF	NA
ENSG00000237943	ENST00000613985	PRKCQ-AS1	ENSG00000197857	ZNF44	14.56	91.9612	P15621	TF	NA
ENSG00000237943	ENST00000613985	PRKCQ-AS1	ENSG00000198429	ZNF69	1.8	93.9245	Q9UC07	TF	NA
ENSG00000237943	ENST00000624974	PRKCQ-AS1	ENSG00000198429	ZNF69	3.79	90.5016	Q9UC07	TF	NA

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

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lncRNA-DNA interaction for PRKCQ-AS1

lncRNA targets the enhancer region and positively regulates the gene expression.

Only predicted by TDF

SKA2,C11orf1,MTMR10,OXNAD1,C21orf91,TATDN3,FHIT,CCNC,IFTAP,RPS27A,LRRC28,BCCIP,COX11,WDCP,EIPR1,FRA10AC1,METTL5,CAAP1,GLMN,GATA3,RTN4IP1,ASF1A,HHLA3,C6orf136,SPNS2,SWSAP1,C2orf42,ARL3,UROS,SPACA9,PTCD3,EEF1B2,ZNF44,ANAPC7,DNASE1L3,PRKCQ,SEMA4D,PDCD2,UQCC2,CD7,BIN1,POLG2,LYPLAL1,SSU72,ATP5F1C,CBY1,METTL23,MAL,TRAM1L1,GABPB1,SKAP1,DCAF17,SLC48A1,GEMIN6,MTRF1,ZNF22,AGPAT4,THYN1,QRSL1,CAMKMT,SLC25A17,ANKRD49,GTF2A2,C10orf88,FAM216A,ALKBH2,AIF1L,RPP38,PPM1K,TIGD1,EPM2A,MADD,C22orf39,C12orf73,ANKRD16,TSEN54,HDAC1,MRPS9,SERP2,LINS1,NSUN6,NMT2,ABCD4,LRTOMT,SAYSD1,MFF,TPRKB,FECH,BOLA1,RNF115,ACP1,CWF19L1,COA5,DNASE1,MICOS10,ECI2,PTP4A2,NSMCE4A,SEPHS1,FAM204A,TFB1M,ZNF69,ABHD17B,TMEM125,NAE1,B9D2,LDHB

Exist in public source

lncRNA targets the promoter region and positively regulates the gene expression.

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for PRKCQ-AS1

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

LMNA,SLC35C1,MVP,TPP1,NIBAN2,SEC24D,MAP3K6,MYOF

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

ORF mutation

-lncRNA and exonskipping events are negatively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

LOF

lncRNA targets by miRNA.

LncRNA Ensembl ID	miRNA ID	LncRNA ENST ID	Binding site in lncRNA	Score	Energy	Align Len	Public source
ENSG00000237943	hsa-mir-582	ENST00000445427	chr10:6580833-6580930	195.00	-73.71	92	NA
ENSG00000237943	hsa-mir-582	ENST00000445427	chr10:6581428-6581521	175.00	-76.44	92	NA
ENSG00000237943	hsa-mir-582	ENST00000445427	chr10:6581252-6581358	169.00	-73.48	101	NA
ENSG00000237943	hsa-mir-582	ENST00000445427	chr10:6580469-6580560	158.00	-98.20	83	NA
ENSG00000237943	hsa-mir-582	ENST00000445427	chr10:6580696-6580800	155.00	-81.99	97	NA
ENSG00000237943	hsa-mir-582	ENST00000445427	chr10:6581136-6581241	155.00	-79.71	102	NA
ENSG00000237943	hsa-mir-582	ENST00000445427	chr10:6580948-6581057	141.00	-83.45	103	NA
ENSG00000237943	hsa-mir-582	ENST00000455810	chr10:6580833-6580930	191.00	-72.81	91	NA
ENSG00000237943	hsa-mir-582	ENST00000455810	chr10:6580469-6580560	158.00	-98.20	83	NA
ENSG00000237943	hsa-mir-582	ENST00000455810	chr10:6580696-6580800	155.00	-81.99	97	NA
ENSG00000237943	hsa-mir-582	ENST00000455810	chr10:6581200-6581305	155.00	-79.71	102	NA
ENSG00000237943	hsa-mir-582	ENST00000455810	chr10:6581012-6581121	141.00	-83.45	103	NA
ENSG00000237943	hsa-mir-582	ENST00000613651	chr10:6580833-6580930	191.00	-72.81	91	NA
ENSG00000237943	hsa-mir-582	ENST00000613651	chr10:6581316-6581422	169.00	-73.48	101	NA
ENSG00000237943	hsa-mir-582	ENST00000613651	chr10:6580696-6580800	155.00	-81.99	97	NA
ENSG00000237943	hsa-mir-582	ENST00000613651	chr10:6581200-6581305	155.00	-79.71	102	NA
ENSG00000237943	hsa-mir-582	ENST00000613651	chr10:6581012-6581121	141.00	-83.45	103	NA
ENSG00000237943	hsa-mir-582	ENST00000414894	chr10:6583884-6583983	198.00	-80.92	97	NA
ENSG00000237943	hsa-mir-582	ENST00000414894	chr10:6583696-6583805	141.00	-83.45	103	NA
ENSG00000237943	hsa-mir-582	ENST00000449648	chr10:6583895-6584010	188.00	-81.83	114	NA
ENSG00000237943	hsa-mir-582	ENST00000449648	chr10:6583998-6584095	143.00	-73.04	87	NA
ENSG00000237943	hsa-mir-582	ENST00000449648	chr10:6583696-6583805	141.00	-83.45	103	NA
ENSG00000237943	hsa-mir-582	ENST00000607982	chr10:6584273-6584382	184.00	-81.44	107	NA
ENSG00000237943	hsa-mir-582	ENST00000607982	chr10:6584000-6584106	169.00	-73.48	101	NA
ENSG00000237943	hsa-mir-582	ENST00000607982	chr10:6584100-6584198	162.00	-73.51	97	NA
ENSG00000237943	hsa-mir-582	ENST00000607982	chr10:6583884-6583989	155.00	-79.71	102	NA
ENSG00000237943	hsa-mir-582	ENST00000607982	chr10:6584371-6584464	154.00	-75.85	67	NA
ENSG00000237943	hsa-mir-582	ENST00000608526	chr10:6583884-6583983	198.00	-80.92	97	NA
ENSG00000237943	hsa-mir-582	ENST00000608526	chr10:6584130-6584223	173.00	-68.00	91	NA
ENSG00000237943	hsa-mir-582	ENST00000608526	chr10:6583989-6584087	162.00	-75.87	68	NA
ENSG00000237943	hsa-mir-582	ENST00000608526	chr10:6584212-6584305	154.00	-75.85	67	NA
ENSG00000237943	hsa-mir-582	ENST00000608526	chr10:6584332-6584425	147.00	-76.35	96	NA
ENSG00000237943	hsa-mir-582	ENST00000623015	chr10:6583874-6583966	162.00	-69.86	85	NA
ENSG00000237943	hsa-mir-582	ENST00000623015	chr10:6583939-6584032	154.00	-75.85	67	NA
ENSG00000237943	hsa-mir-582	ENST00000623015	chr10:6584059-6584152	147.00	-76.35	96	NA
ENSG00000237943	hsa-mir-582	ENST00000615210	chr10:6584353-6584451	191.00	-82.00	100	NA
ENSG00000237943	hsa-mir-582	ENST00000615210	chr10:6583895-6583999	188.00	-75.32	103	NA
ENSG00000237943	hsa-mir-582	ENST00000615210	chr10:6584074-6584183	184.00	-81.44	107	NA
ENSG00000237943	hsa-mir-582	ENST00000615210	chr10:6584172-6584265	154.00	-75.85	67	NA
ENSG00000237943	hsa-mir-582	ENST00000613985	chr10:6583884-6583983	198.00	-80.92	97	NA
ENSG00000237943	hsa-mir-582	ENST00000613985	chr10:6584275-6584373	191.00	-82.00	100	NA
ENSG00000237943	hsa-mir-582	ENST00000613985	chr10:6583996-6584105	184.00	-81.44	107	NA
ENSG00000237943	hsa-mir-582	ENST00000613985	chr10:6584497-6584596	182.00	-72.62	97	NA
ENSG00000237943	hsa-mir-582	ENST00000613985	chr10:6584379-6584484	168.00	-67.98	86	NA
ENSG00000237943	hsa-mir-582	ENST00000613985	chr10:6584094-6584187	154.00	-75.85	67	NA
ENSG00000237943	hsa-mir-582	ENST00000625102	chr10:6584601-6584699	191.00	-82.00	100	NA
ENSG00000237943	hsa-mir-582	ENST00000625102	chr10:6584193-6584295	179.00	-81.52	101	NA
ENSG00000237943	hsa-mir-582	ENST00000625102	chr10:6584000-6584106	169.00	-73.48	101	NA
ENSG00000237943	hsa-mir-582	ENST00000625102	chr10:6584100-6584198	162.00	-73.51	97	NA
ENSG00000237943	hsa-mir-582	ENST00000625102	chr10:6584347-6584431	156.00	-67.46	59	NA
ENSG00000237943	hsa-mir-582	ENST00000625102	chr10:6583884-6583989	155.00	-79.71	102	NA
ENSG00000237943	hsa-mir-582	ENST00000625102	chr10:6584420-6584513	154.00	-75.85	67	NA
ENSG00000237943	hsa-mir-582	ENST00000624974	chr10:6583884-6583983	198.00	-80.92	97	NA
ENSG00000237943	hsa-mir-582	ENST00000624974	chr10:6584275-6584373	191.00	-82.00	100	NA
ENSG00000237943	hsa-mir-582	ENST00000624974	chr10:6584829-6584928	186.00	-72.13	101	NA
ENSG00000237943	hsa-mir-582	ENST00000624974	chr10:6583996-6584105	184.00	-81.44	107	NA
ENSG00000237943	hsa-mir-582	ENST00000624974	chr10:6584470-6584562	161.00	-79.18	96	NA
ENSG00000237943	hsa-mir-582	ENST00000624974	chr10:6584094-6584187	154.00	-75.85	67	NA
ENSG00000237943	hsa-mir-582	ENST00000624974	chr10:6584666-6584764	153.00	-72.18	71	NA
ENSG00000237943	hsa-mir-582	ENST00000624974	chr10:6584562-6584663	150.00	-78.55	100	NA
ENSG00000237943	hsa-mir-582	ENST00000623160	chr10:6584120-6584218	191.00	-82.00	100	NA
ENSG00000237943	hsa-mir-582	ENST00000623160	chr10:6584500-6584599	186.00	-72.13	101	NA
ENSG00000237943	hsa-mir-582	ENST00000623160	chr10:6583874-6583966	162.00	-69.86	85	NA
ENSG00000237943	hsa-mir-582	ENST00000623160	chr10:6583939-6584032	154.00	-75.85	67	NA
ENSG00000237943	hsa-mir-582	ENST00000623160	chr10:6584337-6584435	153.00	-72.18	71	NA
ENSG00000237943	hsa-mir-582	ENST00000623160	chr10:6584233-6584334	146.00	-80.99	96	NA
ENSG00000237943	hsa-mir-582	ENST00000624678	chr10:6583884-6583983	198.00	-80.92	97	NA
ENSG00000237943	hsa-mir-582	ENST00000624678	chr10:6584275-6584373	191.00	-82.00	100	NA
ENSG00000237943	hsa-mir-582	ENST00000624678	chr10:6583996-6584105	184.00	-81.44	107	NA
ENSG00000237943	hsa-mir-582	ENST00000624678	chr10:6584448-6584547	182.00	-72.62	97	NA
ENSG00000237943	hsa-mir-582	ENST00000624678	chr10:6584094-6584187	154.00	-75.85	67	NA
ENSG00000237943	hsa-mir-582	ENST00000625147	chr10:6584120-6584218	191.00	-82.00	100	NA
ENSG00000237943	hsa-mir-582	ENST00000625147	chr10:6584224-6584329	168.00	-67.98	86	NA
ENSG00000237943	hsa-mir-582	ENST00000625147	chr10:6583874-6583966	162.00	-69.86	85	NA
ENSG00000237943	hsa-mir-582	ENST00000625147	chr10:6583939-6584032	154.00	-75.85	67	NA
ENSG00000237943	hsa-mir-582	ENST00000625147	chr10:6584431-6584537	149.00	-96.03	101	NA
ENSG00000237943	hsa-mir-582	ENST00000561822	chr10:6586671-6586776	202.00	-80.99	106	NA
ENSG00000237943	hsa-mir-582	ENST00000561822	chr10:6586511-6586604	187.00	-90.19	95	NA
ENSG00000237943	hsa-mir-582	ENST00000561822	chr10:6586401-6586502	173.00	-71.42	100	NA
ENSG00000237943	hsa-mir-582	ENST00000561822	chr10:6586259-6586347	167.00	-72.73	92	NA
ENSG00000237943	hsa-mir-582	ENST00000561822	chr10:6586797-6586904	146.00	-75.10	92	NA
ENSG00000237943	hsa-mir-582	ENST00000609627	chr10:6607474-6607573	182.00	-72.62	97	NA
ENSG00000237943	hsa-mir-582	ENST00000609627	chr10:6607288-6607362	159.00	-75.13	70	NA
ENSG00000237943	hsa-mir-582	ENST00000609627	chr10:6607367-6607461	152.00	-70.88	93	NA
ENSG00000237943	hsa-mir-582	ENST00000607996	chr10:6607652-6607751	186.00	-72.13	101	NA
ENSG00000237943	hsa-mir-582	ENST00000607996	chr10:6607496-6607587	183.00	-79.41	99	NA
ENSG00000237943	hsa-mir-582	ENST00000607996	chr10:6607367-6607461	152.00	-70.88	93	NA
ENSG00000237943	hsa-mir-582	ENST00000607996	chr10:6607322-6607362	143.00	-60.69	21	NA
ENSG00000237943	hsa-mir-582	ENST00000609346	chr10:6608674-6608773	186.00	-72.13	101	NA
ENSG00000237943	hsa-mir-582	ENST00000609346	chr10:6608831-6608933	161.00	-73.11	96	NA
ENSG00000237943	hsa-mir-582	ENST00000609346	chr10:6609053-6609147	161.00	-68.57	86	NA
ENSG00000237943	hsa-mir-582	ENST00000609346	chr10:6608511-6608609	153.00	-72.18	71	NA
ENSG00000237943	hsa-mir-582	ENST00000609346	chr10:6608978-6609072	148.00	-74.99	93	NA
ENSG00000237943	hsa-mir-582	ENST00000609346	chr10:6608407-6608508	146.00	-79.18	96	NA
ENSG00000237943	hsa-mir-582	ENST00000609346	chr10:6609166-6609258	144.00	-65.77	82	NA
ENSG00000237943	hsa-mir-582	ENST00000608453	chr10:6608406-6608505	182.00	-72.62	97	NA
ENSG00000237943	hsa-mir-582	ENST00000608453	chr10:6608563-6608665	161.00	-73.11	96	NA
ENSG00000237943	hsa-mir-582	ENST00000608453	chr10:6608785-6608879	161.00	-68.57	86	NA
ENSG00000237943	hsa-mir-582	ENST00000608453	chr10:6608710-6608804	148.00	-74.99	93	NA

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Variants for PRKCQ-AS1

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID	PC Gene ID	PC Gene Name	Positive correlated cancers	Cancer with PC gene up-regulation	Cancer with PC gene down-regulation
ENSG00000237943	ENSG00000065675	PRKCQ	CESC,COAD,DLBC,GBM,HNSC,KICH,KIRC,KIRP,LAML,LGG,OV,READ,TGCT,THCA,THYM,UCEC,UCS		GBM,KICH,KIRC
ENSG00000237943	ENSG00000119965	C10orf88	COAD,GBM,KICH,LAML,THYM		GBM
ENSG00000237943	ENSG00000143919	CAMKMT	COAD,KICH,KIRC,THCA,THYM		KICH
ENSG00000237943	ENSG00000154642	C21orf91	COAD,GBM,KICH,LAML,LGG		GBM
ENSG00000237943	ENSG00000151778	SERP2	DLBC,GBM,KICH,KIRC,KIRP,THYM		GBM,KICH
ENSG00000237943	ENSG00000154814	OXNAD1	DLBC,KIRC,LAML,THCA,THYM		KIRC
ENSG00000237943	ENSG00000163687	DNASE1L3	DLBC,KICH,KIRC,TGCT,THCA		KICH,KIRC
ENSG00000237943	ENSG00000166912	MTMR10	DLBC,GBM,KICH,KIRC,LGG,THCA		GBM,KIRC
ENSG00000237943	ENSG00000183018	SPNS2	DLBC,GBM,KICH,LAML,LGG		GBM,KICH
ENSG00000237943	ENSG00000187764	SEMA4D	DLBC,GBM,KICH,LGG,THYM,UCS		GBM
ENSG00000237943	ENSG00000026652	AGPAT4	GBM,KIRC,KIRP,LAML,LGG		GBM
ENSG00000237943	ENSG00000107362	ABHD17B	GBM,LAML,LGG,THCA,THYM		GBM
ENSG00000237943	ENSG00000134461	ANKRD16	GBM,KICH,LAML,OV,THCA,UCS		GBM
ENSG00000237943	ENSG00000136717	BIN1	GBM,HNSC,LAML,LGG,THCA		GBM
ENSG00000237943	ENSG00000138175	ARL3	GBM,KICH,KIRC,KIRP,THCA		KICH
ENSG00000237943	ENSG00000148690	FRA10AC1	GBM,KICH,KIRP,LAML,TGCT		GBM
ENSG00000237943	ENSG00000163644	PPM1K	GBM,KICH,KIRC,LAML,THYM		GBM,KIRC
ENSG00000237943	ENSG00000172005	MAL	GBM,KICH,KIRC,LGG,THYM,UCS		GBM,KIRC
ENSG00000237943	ENSG00000174599	TRAM1L1	GBM,KICH,KIRC,KIRP,THCA		GBM,KICH,KIRC
ENSG00000237943	ENSG00000179178	TMEM125	GBM,KICH,KIRC,LGG,THCA		GBM,KICH
ENSG00000237943	ENSG00000188690	UROS	GBM,HNSC,KICH,THCA,THYM		GBM
ENSG00000237943	ENSG00000204564	C6orf136	GBM,KIRC,TGCT,THCA,THYM		GBM
ENSG00000237943	ENSG00000211584	SLC48A1	GBM,KICH,KIRC,LAML,LGG		GBM,KIRC
ENSG00000237943	ENSG00000066926	FECH	KICH,KIRC,LAML,THCA,THYM		KIRC
ENSG00000237943	ENSG00000111716	LDHB	KICH,KIRC,LAML,THCA,THYM,UCS		KIRC
ENSG00000237943	ENSG00000112425	EPM2A	KICH,KIRC,LAML,THCA,THYM		KIRC
ENSG00000237943	ENSG00000165698	SPACA9	KICH,KIRC,KIRP,LAML,THCA,THYM		KICH,KIRC
ENSG00000237943	ENSG00000197568	HHLA3	KICH,KIRC,LAML,TGCT,THCA		KICH
ENSG00000237943	ENSG00000213918	DNASE1	KIRC,KIRP,LAML,THCA,THYM		KIRC

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID	LncRNA ENST ID	PC Gene Name	PC Gene ID	PC ENST ID	dG	nDG	Cancer with PC gene up-regulation	Cancer with PC gene Down-regulation
ENSG00000237943	ENST00000449648	TPP1	ENSG00000166340	ENST00000528657	-0.1853	1	KICH	-

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000237943.5	ENST00000445427.1	182	5	553
ENSG00000237943.5	ENST00000455810.4	112	417	755
ENSG00000237943.5	ENST00000613651.1	94	630	346
ENSG00000237943.5	ENST00000414894.1	94	444	160
ENSG00000237943.5	ENST00000449648.1	52	85	243
ENSG00000237943.5	ENST00000607982.4	82	315	67
ENSG00000237943.5	ENST00000608526.4	64	323	517
ENSG00000237943.5	ENST00000623015.2	62	185	0
ENSG00000237943.5	ENST00000615210.3	44	342	208
ENSG00000237943.5	ENST00000613985.3	66	641	441
ENSG00000237943.5	ENST00000625102.2	116	713	363
ENSG00000237943.5	ENST00000624974.2	73	904	683
ENSG00000237943.5	ENST00000623160.2	87	758	495
ENSG00000237943.5	ENST00000624678.2	63	674	483
ENSG00000237943.5	ENST00000625147.2	80	579	337
ENSG00000237943.5	ENST00000561822.1	52	714	556
ENSG00000237943.5	ENST00000609627.4	74	314	538
ENSG00000237943.5	ENST00000607996.4	48	149	3
ENSG00000237943.5	ENST00000609346.4	46	489	349
ENSG00000237943.5	ENST00000608453.1	76	574	344

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential