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lncRNA: ENSG00000237523 |
Summary for LINC00857 |
Gene summary |
Gene information | Ensembl ID | ENSG00000237523 | Gene symbol | LINC00857 |
Gene name | long intergenic non-protein coding RNA 857 | |
HGNC | 45114 | |
Entrez ID | 439990 | |
Gene type | lincRNA | |
Synonyms | LINC00857|10q22.3 | |
UniProtAcc |
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Structure and expression level for LINC00857 |
AS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure. |
Differentially expressed gene analysis between cancer and normal samples. |
Ensembl ID | Base mean | log2FC(AD/control) | lfcSE | Stat | P-value | Adjc.p-value | DEG direction | Cancer type |
ENSG00000237523 | 3.294888e+02 | 1.782001e+00 | 3.661353e-01 | 4.867057e+00 | 1.130000e-06 | 7.360000e-06 | UP | CHOL |
ENSG00000237523 | 2.723090e+02 | 2.052773e+00 | 2.285176e-01 | 8.982998e+00 | 2.630000e-19 | 5.870000e-18 | UP | KIRP |
ENSG00000237523 | 1.861392e+02 | 2.266422e+00 | 1.363082e-01 | 1.662719e+01 | 4.430000e-62 | 4.250000e-60 | UP | LUAD |
Correlation between lncRNAs and cancer stages. |
LncRNA Ensembl ID | Correlation | P-value | Cancer Type | Adjc.p-value |
ENSG00000237523 | 5.023353e-01 | 4.377598e-04 | CHOL | 8.935825e-04 |
ENSG00000237523 | 4.144811e-01 | 9.859438e-26 | LUAD | 7.039638e-23 |
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lncRNA-Protein interaction for LINC00857 |
lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5). |
LncRNA Ensembl ID | LncRNA ENST ID | LncRNA Name | Protein Ensembl ID | Protein Name | CatRAPID Score | Lncpro Score | UniPortID | Gene Subtype | Public source |
lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5). |
LncRNA Ensembl ID | LncRNA ENST ID | LncRNA Name | Protein Ensembl ID | Protein Name | CatRAPID Score | Lncpro Score | UniPortID | Gene Subtype | Public source |
ENSG00000237523 | ENST00000422847 | LINC00857 | ENSG00000124920 | MYRF | 64.94 | 90.2968 | Q9Y2G1 | TF | NA |
lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5). |
LncRNA Ensembl ID | LncRNA ENST ID | LncRNA Name | Protein Ensembl ID | Protein Name | CatRAPID Score | Lncpro Score | UniPortID | Gene Subtype | Public source |
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