 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | SLIRP,PRDX5,SEM1,NDUFS8,CRB3,TAX1BP3,CENPB,MFSD10,GFER,ADAP1,PPP1R16A,GATD1,NUDT14,FAM83H,FAM71E1,TMEM223,AGPAT2,SLC25A10,DCXR,ITPA,C8orf82,THYN1,REEP4,THOC6,PEX16,FBXL6,SERF2,ARFRP1,S100A11,PHLDA3,TMEM238,ATP5F1D,APRT,BAIAP2,CYHR1,TRIOBP | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| Only predicted by TDF | | THOC6,NT5C,SLC25A10,SHFM1,HCFC1R1,TRIOBP | | Exist in public source | | NA |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | SMAD5,HBP1,PIKFYVE,PHF3,RO60,ZEB1,TMEM263,MDC1,KLHL28,ARID1B,ACADM,FOXJ3,DHX40,FAM114A2,MED23,ARNT,FBXO11,APPBP2,AZI2,MFSD14A,SYNJ1 | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000237512 | ENST00000447119 | exon_skip_90104 | chr12:10709907-10710114 | -33.43 | -0.1932 | YBX3 | ENST00000228251 | In-frame |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation | | ENSG00000237512 | ENSG00000127922 | SEM1 | ESCA,KICH,PAAD,THCA,THYM | KICH | | | ENSG00000237512 | ENSG00000163191 | S100A11 | ESCA,PAAD,TGCT,THCA,THYM | THCA | | | ENSG00000237512 | ENSG00000105963 | ADAP1 | KICH,PAAD,THCA,THYM,UCS | KICH | | | ENSG00000237512 | ENSG00000110717 | NDUFS8 | KICH,PAAD,TGCT,THCA,THYM | KICH | | | ENSG00000237512 | ENSG00000142530 | FAM71E1 | KICH,TGCT,THCA,THYM,UCS | KICH | | | ENSG00000237512 | ENSG00000168569 | TMEM223 | KICH,PAAD,TGCT,THCA,THYM | KICH | | | ENSG00000237512 | ENSG00000177225 | GATD1 | KICH,PAAD,THCA,THYM,UCS | KICH | | | ENSG00000237512 | ENSG00000182325 | FBXL6 | KICH,PAAD,THCA,THYM,UCS | KICH | | | ENSG00000237512 | ENSG00000187954 | CYHR1 | KICH,PAAD,THCA,THYM,UCS | KICH | | | ENSG00000237512 | ENSG00000198931 | APRT | KICH,PAAD,TGCT,THCA,THYM | KICH | | | ENSG00000237512 | ENSG00000174307 | PHLDA3 | OV,PAAD,THCA,THYM,UCS | THCA | | | ENSG00000237512 | ENSG00000213977 | TAX1BP3 | STAD,TGCT,THCA,THYM,UCS | THCA | |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation | | ENSG00000237512 | ENST00000449737 | DHX40 | ENSG00000108406 | ENST00000577596 | -0.1094 | 1 | - | KICH | | ENSG00000237512 | ENST00000449737 | DHX40 | ENSG00000108406 | ENST00000425628 | -0.1863 | 108 | - | KICH | | ENSG00000237512 | ENST00000449737 | ACADM | ENSG00000117054 | ENST00000420607 | -0.2113 | 94 | - | KICH,PCPG | | ENSG00000237512 | ENST00000449737 | ACADM | ENSG00000117054 | ENST00000528016 | -0.1306 | 1 | - | KICH,PCPG | | ENSG00000237512 | ENST00000447119 | DHX40 | ENSG00000108406 | ENST00000425628 | -0.1900 | 71 | - | KICH | | ENSG00000237512 | ENST00000447119 | ACADM | ENSG00000117054 | ENST00000420607 | -0.2113 | 269 | - | KICH,PCPG | | ENSG00000237512 | ENST00000447119 | ACADM | ENSG00000117054 | ENST00000528016 | -0.1192 | 176 | - | KICH,PCPG |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000237512.5 | ENST00000449737.4 | 71 | 350 | 135 | | ENSG00000237512.5 | ENST00000447119.2 | 115 | 125 | 469 |
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