lncRNA targets the enhancer region and positively regulates the gene expression. |
lncRNA targets the promoter region and positively regulates the gene expression. |
lncRNA targets the promoter region and negatively regulates the gene expression. |
lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
Only predicted by lncTar | GINM1,SMIM14,ANTXR2,QKI,FAM107B,ADD1,ARSB,ZEB1,ZEB2,CPEB4,FOXJ2,SEC31A,HIPK1,RCAN1,SEC24D,C1S,CYLD,SMAD4,ITGB1,SLC17A5,GIT2,RAB5B,SLC35D1,SYNJ1,SNX9,USP47 | Exist in public source | NA |
lncRNA targets the skipped exon region. | -lncRNA and exonskipping events are positively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
-lncRNA and exonskipping events are negatively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | ENSG00000236305 | ENST00000412754 | exon_skip_33516 | chr1:156938417-156938513 | -15.66 | -0.1800 | ARHGEF11 | ENST00000361409 | In-frame | ENSG00000236305 | ENST00000412754 | exon_skip_445390 | chr5:150403120-150403312 | -22.52 | -0.1425 | CD74 | ENST00000009530 | In-frame |
lncRNA targets by miRNA. |
LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
RNA A-to-I editing events in lncRNA. |
LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
Edited-associated DElncRNAs in cancer. |
LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
lncRNA regulates differentially expressed genes by function as enhancer. |
LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation | ENSG00000236305 | ENST00000412754 | SNX9 | ENSG00000130340 | ENST00000392185 | -0.1420 | 1 | - | CHOL,BLCA | ENSG00000236305 | ENST00000412754 | SNX9 | ENSG00000130340 | ENST00000611124 | -0.1420 | 1 | - | CHOL,BLCA | ENSG00000236305 | ENST00000412754 | SLC35D1 | ENSG00000116704 | ENST00000235345 | -0.1039 | 1 | - | CHOL,COAD,READ | ENSG00000236305 | ENST00000412754 | RCAN1 | ENSG00000159200 | ENST00000492600 | -0.1178 | 6 | - | CHOL,BLCA,LUSC,LUAD,COAD,READ | ENSG00000236305 | ENST00000412754 | SMIM14 | ENSG00000163683 | ENST00000295958 | -0.1046 | 1 | - | CHOL,ESCA,LUSC,COAD,READ | ENSG00000236305 | ENST00000412754 | C1S | ENSG00000182326 | ENST00000360817 | -0.1002 | 74 | - | CHOL,BLCA | ENSG00000236305 | ENST00000412754 | C1S | ENSG00000182326 | ENST00000402681 | -0.1002 | 57 | - | CHOL,BLCA | ENSG00000236305 | ENST00000412754 | FAM107B | ENSG00000065809 | ENST00000378462 | -0.1414 | 61 | - | ESCA,PRAD,LUSC,COAD,READ | ENSG00000236305 | ENST00000412754 | FAM107B | ENSG00000065809 | ENST00000496330 | -0.2942 | 114 | - | ESCA,PRAD,LUSC,COAD,READ | ENSG00000236305 | ENST00000412754 | FAM107B | ENSG00000065809 | ENST00000479731 | -0.5067 | 17 | - | ESCA,PRAD,LUSC,COAD,READ | ENSG00000236305 | ENST00000412754 | SLC17A5 | ENSG00000119899 | ENST00000355773 | -0.1012 | 1 | - | READ | ENSG00000236305 | ENST00000412754 | ANTXR2 | ENSG00000163297 | ENST00000404191 | -0.1744 | 131 | - | CHOL,BLCA,LUSC,COAD,STAD,READ | ENSG00000236305 | ENST00000412754 | ANTXR2 | ENSG00000163297 | ENST00000346652 | -0.3478 | 21 | - | CHOL,BLCA,LUSC,COAD,STAD,READ |
lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | ENSG00000236305.1 | ENST00000412754.1 | 134 | 40 | 444 |
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