 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | RPAP2,ARHGEF1,MGAT4A,SAMHD1,VAMP1,HELQ,ISG20,MYCBP2,POP1,OXNAD1,BICD2,DUSP2,MFSD8,CCR5,WDFY1,SPATA13,RNF166,CMC2,KLF2,SRP19,KLF4,TAP2,VAMP4,RPS6KA3,N4BP2L2,TANK,MKNK1,SLF2,L3HYPDH,ANKRD44,DMTF1,TTC39B,GNAQ,NSD3,CD69,CALHM6,GPATCH11,CLEC10A,ZNF24,GPCPD1,ZFAND5,NUP50,UBE4A,IRAK4,RFTN1,NBN,COTL1,VMP1,ZFP14,CENATAC,PUM3,TP53INP1,ST7L,TMC8,APTX,MSANTD2,CCDC14,MYO9A,SPI1,ARAP2,STRBP,CHMP5,CLK4,GIMAP7,LBR,DENND1C,ZUP1,UBE2N,ZBED5,HUS1,PRKD2,INPP5B,CD37,TBK1,TTC14,KNTC1,RANBP6,HCK,SUDS3,EXOC8,PPIP5K2,CD74,GIT2,TMEM106A,SIAH1,MLKL,TAF9,CCR7,OGT,ARIH1,PDE7A,KLRB1,CARNMT1,GZF1,NCBP1,PPTC7,RNF19A,ARID4B,CLIC2,CLOCK,FEM1C,PTAR1,DNAJC16,RBM15,CHKB,PSIP1,RIC8B,JAK3,MBD2,BBIP1,FLI1,MAP4K1,SEPTIN6,THOC2,CLK1,ZBTB6,EDEM1,ATXN7,OTULIN,MRRF,GABPB1,OFD1,FAM214B,INTS6,FCHSD1,HELLS,CD84,VTI1A,GZMM,KDM7A,XPNPEP3,GMIP,MIER1,LMO2,HSH2D,NPAT,NAPB,NAA25,ERMP1,MAP3K14,EML4,MIS18BP1,ZFP62,PRKX,GON4L,MDN1,CDC27,SAMSN1,GTDC1,DOCK10,C9orf72,BIN2,CHIC1,ORMDL1,CHD9,NRN1,BAZ1A,FKBP15,MBD4,AGO3,HPS5,SECISBP2L,OSBPL3,EIF4G3,PPP6C,PHC3,POGLUT1,DOK3,PASK,AIDA,SKIL,SUPT20H,USP33,ANKRD28,FIGNL1,NR2C2,C6orf62,R3HDM1,PPP4R2,KCTD12,TLR1,TENT5C,CD72,TMEM273,LAMP3,CCDC69,FAM114A2,STAG2,CYRIA,AOAH,SLC25A28,CXCR3,CDK17,STYX,EGR2,METTL4,GLS,ATG2B,ZFC3H1,GRK3,MIOS,TAGAP,XPO6,N4BP2L1,SEPSECS,ARHGEF7,AP4E1,CHSY1,VCPKMT,ITPRIP,EIF4A1,PIK3C2A,FAM204A,VPS13A,EIF2AK2,PRXL2C,ABCE1,ATF7IP,ECPAS,FMNL3,SHOC2,ERCC5,ZFP3,IKZF3,SELENOI,RFFL,LONRF1,DEF6,MOSPD2,LTN1,HERC4,TMEM168,CCR1,ATM,THADA,TRMO,NCF4,STK17B,SP140,TTC17,CDK13,KLF7,CDC42SE1,ATP2A3,DGKA,HOOK3,FGD4,PPWD1,RC3H2,RELCH,RSBN1,MLLT6,SLC30A7,RBM27,ATG12,C16orf54,UCP2,AHI1,FASTKD1,INO80D,SAMD8,GPSM3,ICE2,C9orf78,RORA,CRLF3,CNOT6L,ATP8B2,RASAL3,KRIT1,FAM111A,TNFAIP3,GCFC2,THOC1,UBA6,TRNT1,ACAP2,LPXN,SWAP70,AKNA,ASF1A,LRRC25,C1QC,ODR4,ZMYM5,PRF1,CD8A,PPP3CB,FOXP3,IFT74,AP5M1,CD48,RASGRP2,RC3H1,NUDT3,ERP44,CBLB,UBE2J1,XPO4,NAMPT,SETX,ZNF44,SLC12A6,TRIM13,NCKAP1L,UFL1,FGFR1OP2,LCP2,DNASE1L3,TRAF1,FGR,LRRFIP2,XIAP,PLA2G7,SACS,ATP7A,CD247,BCLAF3,SEMA4D,FNBP1,DNAJB14,PPM1B,PUS7L,CD47,CEP83,GGNBP2,ELMO1,UACA,LIN54,UBN2,ANKDD1A,BMP2K,DDX6,NFKBID,LRIG2,ABHD18,SESTD1,ATP11C,ZBTB2,NEMF,RTTN,SMCHD1,CREBRF,FOXN3,PDCD1,MECP2,CIITA,TYROBP,AGTPBP1,ZC3H8,MS4A1,DGKE,TRAPPC6B,ENOSF1,CD3G,ANKRD49,PAXBP1,SLC38A9,HBEGF,EPS15,GANC,LY75,FNBP4,PLEKHA8,ARHGDIB,PHF11,CYB5R4,RSRP1,PPM1K,TMF1,SSH2,ERO1B,MYO5A,CHD2,LAG3,PTPN6,CLEC2D,PWWP2A,PTPN22,ODF3B,ZNF720,CLEC2B,LINS1,HERC1,SYTL3,GIMAP8,TRIM22,APOL2,ANKRD26,GSAP,GGA2,DOCK8,PLGRKT,PUS10,BCL2L11,NDUFAF5,MRE11,GK5,RBM6,IL4I1,TOR1AIP2,PARVG,TRMT13,GDAP2,ARHGAP12,ARID4A,ATP6V0A2,SEC24A,RASSF5,RAC2,HLA-DPA1,CD3D,VCPIP1,SYNE2,DOK2,CETP,TNFRSF14,GBP1,XAF1,CHD1,CASP1,MTRF1L,LAIR1,HAVCR2,PIGB,RIPK2,MCPH1,PNISR,MS4A6A,GEN1,CDC37L1,SFPQ,LCP1,PTPN7,CEPT1,USP45,CARD8,ELL,DMXL2,SIGLEC10,PLA2G2D,ATAD2B,ZNF10,SRSF7,FAM126B,NCOA2,OSGIN2,RNF149,BCL2,RALGAPA1,MTMR10,CEP120,MYO1F,RNF122,TMX3,KLF12,NAGK,ITGB2,GZMH,ANGEL2,PARP15,WASHC2C,POC5,IL4R,ADPGK,FAM214A,MYSM1,AKAP8,ARID2,PLEK,UIMC1,UVRAG,MALT1,OSTM1,ITGB7,SIGLEC1,KATNBL1,FMNL1,PICALM,ACAP1,TBRG1,CD4,SLX4IP,NR4A2,SUGT1,AFTPH,TET3,NUAK2,PCED1B,EGR3,PRR14L,RNPC3,IRF1,ANKRD10,BARD1,TNFRSF1B,LRCH3,CNOT4,SH3BGRL,DOP1A,KIAA2026,MSL3,KMT2C,CCSAP,DENND4A,DDX60,KLF6,MPHOSPH9,TDP1,CCNT2,STAT4,SMU1,SP100,EEA1,PHTF2,CHD6,SLC45A4,AGO2,BRWD1,DERL1,NIN,DDI2,RBM26,MARCHF1,CCNH,RBM25,ENTR1,VAV1,FBXW7,RO60,CD7,P2RY8,SYNE1,SP4,IRF7,LNPEP,PRPF39,RESF1,ITSN2,SIRPG,FAM117A,FAM53B,OSBPL11,WDFY3,ENTPD4,SMC5,EPC1,PIK3IP1,LCOR,DDHD1,MAP4K5,CMTR2,GORAB,UBR3,CEP44,GMFG,SERPINB9,NOL9,ARGLU1,LIG4,CCNL1,RUBCN,TLK1,OSTF1,IRF2,KPNA3,SLC9A9,PNRC1,ASB7,POLK,PLEKHA3,TCL1A,CELF1,TMEM161B,PSPC1,PRKAA1,BTK,GNB4,AMPD3,PRDM2,WRN,MFNG,PMS1,RPS6,NFIB,DENND1B,PSMG4,PBX4,AAK1,TIA1,ZNF83,PPP4R3A,MOSMO,CLEC7A,MCUB,ATF3,PLCG2,SP110,NSUN6,RFX3,TMEM245,HAUS6,SYNJ1,PTPN2,CERKL,PIM2,VOPP1,KDM2B,WASHC2A,C3orf38,SZT2,C12orf4,DDX5,USP48,STX17,CYLD,PPP2R5E,PARP8,LRRK1,STK4,CXCR6,LYST,IL2RB,MTMR9,CCND2,TMEM65,PTBP3,PNN,CWF19L1,LUC7L2,ADAMDEC1,RUNX3,CCAR1,GAPVD1,SACM1L,C1orf54,SAMD9L,CENPJ,CASP8,DPH7,CCL5,SNX13,POU6F1,TRA2A,KMT2A,SH2D3C,PREX1,XPA,GPR132,CTSS,STX2,JMY,TEPSIN,RBM33,PAG1,AVL9,NOL8,ZDHHC21,AGAP6,MYO1G,GABPB2,KLF9,SH2D2A,PIGA,MPHOSPH10,MOB1A,CPEB2,PPP2R1B,TRIM66,RBM39,ODF2L,TNFAIP2,ACKR1,MSL2,ERICH1,PPP1R15A,EAF2,RHOQ,SLA2,RFX5,IER2,WASHC4,APOBR,NSRP1,PDS5A,PIGL,POLR1F,ARHGAP30,SELPLG,RABGAP1L,DDX39A,MAP3K2,RBM28,IKZF5,C2CD5,PHYKPL,SF3B1,NHLRC2,FRA10AC1,ZBTB5,CAAP1,RUFY3,GCH1,LST1,OGA,ZFP69,DUSP1,RASAL2,PAN3,CEP350,FOXO1,ARHGAP4,SELL,KMT2E,CLASP2,DTX3L,PSME4,ARHGAP9,BCAP29,PLAA,MINDY2,RICTOR,ADA2,CENPT,FAS,CYTH1,CHORDC1,NFKBIA,RAB11FIP2,SCLT1,AIM2,EMB,USP24,FAM76B,LRRFIP1,CXCR4,BRWD3,CYTIP,MRPS31,ADAT2,TRAF3,SIT1,ARHGAP45,SLC38A6,RNASEH2B,HVCN1,TCF20,C2orf69,UBQLN1,THAP9,TRIM33,TENT4B,HMGB2,RAB22A,WDR20,SKAP1,KIF14,THAP6,DDX17,FBXW2,FERMT3,ABL2,SLC7A6,APOL3,SENP7,CHFR,AQR,MTRF1,GBP2,FMR1,SOD2,EPB41,IL2RA,ASXL2,STRN,GNPDA2,TRPM7,GZMK,LAT2,WSB1,TRAK2,IL18BP,MKLN1,TC2N,PHIP,LAPTM5,ITGAL,CBLN3,PSTPIP2,ELK4,TRIM52,ASAP1,DEPDC5,CCDC93,STAC3,TTC32,MICAL1,MTX3,ZMAT1,RNF130,GOLGA8B,YOD1,UBAP2,CSGALNACT2,FAM78A,GIMAP6,TSC22D3,ALPK1,TUT7,VPS13C,TAPT1,NLRC3,C1QA,CREM,GOLGA8A,ITGAE,ABI3,TEX10,CYP2R1,PPHLN1,MPEG1,FKTN,CNOT2,ABCA1,HLA-E,PIKFYVE,RBM5,USP3,NKTR,RBMS1,IKZF2,PLEKHO1,RILPL2,MTF1,ZCCHC7,IL2RG,CRBN,CEP170,SLC25A45,ZNF84,GBP4,ETS1,BAZ2B,RCSD1,STK10,WDR33,SLFN11,SLAMF6,NEDD1,TRA2B,ZDHHC6,C3AR1,STOM,FRYL,PCMTD1,GNGT2,PIAS2,ARHGEF6,JMJD1C,ARHGAP21,USP31,MAP4K2,NSUN3,TSC1,SPG11,TEP1,NGLY1,CLIP1,USPL1,NFIL3,USP20,EBI3,SFMBT2,PRPF4B,LIN7C,TET2,TRAPPC2,KBTBD2,IFIT5,ATF2 | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | AKR7A2,FIBP,LRP5,MAZ,CHMP6,COPG1,STK16,UQCRC1,ALKBH7,STUB1,MIEF2,CUTA,EPN1,TMEM53,DALRD3,KAT5,CCDC71,CRB3,TMED1,ZFPL1,SLC4A2,YIPF2,MGAT4B,NAXE,CANT1,MPST | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | | ENSG00000236199 | ENST00000426860 | exon_skip_75398 | chr11:72692752-72692785 | -5.81 | -0.2905 | ARAP1 | ENST00000393605 | In-frame |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000236199 | ENST00000426860 | exon_skip_41813 | chr10:68337857-68337996 | -13.36 | -0.1036 | HNRNPH3 | ENST00000265866 | Frame-shift | | ENSG00000236199 | ENST00000426860 | exon_skip_370518 | chr22:50247691-50247776 | -9.94 | -0.1578 | HDAC10 | ENST00000216271 | Frame-shift | | ENSG00000236199 | ENST00000426860 | exon_skip_316747 | chr19:19202469-19202575 | -8.90 | -0.1127 | NR2C2AP | ENST00000331552 | Frame-shift | | ENSG00000236199 | ENST00000426860 | exon_skip_482403 | chr8:27445793-27445919 | -18.00 | -0.1978 | PTK2B | ENST00000346049,ENST00000397501 | In-frame | | ENSG00000236199 | ENST00000426860 | exon_skip_499791 | chr9:128627924-128627942 | -4.08 | -0.4080 | SPTAN1 | ENST00000372731 | In-frame |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation | | ENSG00000236199 | ENSG00000131378 | RFTN1 | ACC,CHOL,PAAD,SKCM,UVM | | CHOL | | ENSG00000236199 | ENSG00000134996 | OSTF1 | ACC,CHOL,KICH,LGG,LIHC,OV,PAAD,READ,SKCM,UCS,UVM | | CHOL | | ENSG00000236199 | ENSG00000136819 | C9orf78 | ACC,CHOL,PAAD,READ,SKCM,TGCT,UVM | | CHOL | | ENSG00000236199 | ENSG00000147894 | C9orf72 | ACC,BLCA,BRCA,CHOL,COAD,DLBC,ESCA,HNSC,KICH,KIRC,LGG,PAAD,READ,SKCM,STAD,TGCT,UCEC,UVM | | CHOL | | ENSG00000236199 | ENSG00000113851 | CRBN | BLCA,CHOL,COAD,PAAD,SKCM,UCEC,UVM | | CHOL | | ENSG00000236199 | ENSG00000154814 | OXNAD1 | BLCA,BRCA,CHOL,COAD,DLBC,KIRC,PAAD,TGCT,THCA,UCEC | | CHOL | | ENSG00000236199 | ENSG00000112159 | MDN1 | BRCA,CHOL,COAD,DLBC,KIRC,PAAD,TGCT,UCEC,UVM | | CHOL | | ENSG00000236199 | ENSG00000005844 | ITGAL | CHOL,DLBC,ESCA,HNSC,PAAD,SARC,SKCM,TGCT,THCA,UVM | | CHOL | | ENSG00000236199 | ENSG00000010610 | CD4 | CHOL,ESCA,PAAD,SKCM,TGCT,UVM | | CHOL | | ENSG00000236199 | ENSG00000026103 | FAS | CHOL,DLBC,HNSC,PAAD,SKCM,UVM | | CHOL | | ENSG00000236199 | ENSG00000028137 | TNFRSF1B | CHOL,DLBC,HNSC,LIHC,PAAD,SKCM,TGCT,THYM,UVM | | CHOL | | ENSG00000236199 | ENSG00000087237 | CETP | CHOL,PAAD,SKCM,TGCT,THCA | | CHOL | | ENSG00000236199 | ENSG00000088827 | SIGLEC1 | CHOL,DLBC,PAAD,SKCM,UVM | | CHOL | | ENSG00000236199 | ENSG00000102738 | MRPS31 | CHOL,PAAD,TGCT,THCA,UVM | | CHOL | | ENSG00000236199 | ENSG00000110756 | HPS5 | CHOL,COAD,DLBC,KICH,PAAD,TGCT,UVM | | CHOL | | ENSG00000236199 | ENSG00000121104 | FAM117A | CHOL,ESCA,HNSC,SKCM,TGCT | | CHOL | | ENSG00000236199 | ENSG00000124785 | NRN1 | CHOL,ESCA,KIRP,THCA,UCS | | CHOL | | ENSG00000236199 | ENSG00000134109 | EDEM1 | CHOL,COAD,GBM,UCEC,UVM | | CHOL | | ENSG00000236199 | ENSG00000146278 | PNRC1 | CHOL,COAD,DLBC,PAAD,SKCM,THCA | | CHOL | | ENSG00000236199 | ENSG00000155849 | ELMO1 | CHOL,ESCA,SKCM,TGCT,THCA | | CHOL | | ENSG00000236199 | ENSG00000162241 | SLC25A45 | CHOL,PAAD,SKCM,THCA,UVM | | CHOL | | ENSG00000236199 | ENSG00000163644 | PPM1K | CHOL,KIRP,PAAD,STAD,TGCT,UCS,UVM | | CHOL | | ENSG00000236199 | ENSG00000163687 | DNASE1L3 | CHOL,KIRP,SKCM,TGCT,THCA,THYM,UVM | | CHOL | | ENSG00000236199 | ENSG00000163823 | CCR1 | CHOL,DLBC,PAAD,SKCM,TGCT,UVM | | CHOL | | ENSG00000236199 | ENSG00000170542 | SERPINB9 | CHOL,COAD,DLBC,LGG,PAAD,SKCM,THCA | | CHOL | | ENSG00000236199 | ENSG00000171115 | GIMAP8 | CHOL,DLBC,GBM,KIRP,PAAD,SKCM,TGCT,UVM | | CHOL | | ENSG00000236199 | ENSG00000173372 | C1QA | CHOL,ESCA,PAAD,SKCM,TGCT,UVM | | CHOL | | ENSG00000236199 | ENSG00000175489 | LRRC25 | CHOL,DLBC,PAAD,SKCM,UVM | | CHOL | | ENSG00000236199 | ENSG00000180644 | PRF1 | CHOL,DLBC,PAAD,SKCM,THYM,UVM | | CHOL | | ENSG00000236199 | ENSG00000181804 | SLC9A9 | CHOL,LIHC,PAAD,SKCM,THCA | | CHOL | | ENSG00000236199 | ENSG00000183508 | TENT5C | CHOL,SKCM,TGCT,THCA,UCS | | CHOL | | ENSG00000236199 | ENSG00000198624 | CCDC69 | CHOL,KIRP,PAAD,SKCM,TGCT,THCA | | CHOL |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000236199.1 | ENST00000426860.1 | 178 | 879 | 1415 |
|
