lncRNA targets the enhancer region and positively regulates the gene expression. |
lncRNA targets the promoter region and positively regulates the gene expression. |
lncRNA targets the promoter region and negatively regulates the gene expression. |
lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
Only predicted by lncTar | CNOT1,MRPL44,DIABLO,SLC35E1,VPS26C,PNPO,SLC30A6,GET3,UHRF1BP1L,SNX12,CHP1,TBC1D5,AIDA,RTL6,ACTR3,GNL3L,TPM3,TOX4,RHOA,PLEKHB2,GORASP2,DNAJC14,CAP1,CLTC,ATRN,KCTD10,SDHC,MRPL19,DHX8,HSPA8,PAK2,SEC24D,STRAP,PRMT5,STK24,CCNI,RTCB,ASXL2,PSME3,AP2B1,G3BP2,MAPK1,SUMO3,SMAD1,ACBD3,PRKAR2A,RAB5C,SSR1,NIPA2,ACVR1,KBTBD4,MFSD1,APP,CHTF8,DCTN1,PCMT1,SF3A1,ABHD5,SERINC3,ACTR2,DCAF7,PEX19,PIGS,VAMP7,GGCX,ERC1,FASTKD2,SEC23B,MED1,EIF3L,EIF4G2,ILF2,SMG8,SETD7,CYFIP1,MIEF1,ZNF28,TMED2,ARL2BP,TEX2,VAMP3,ITFG1,SRRD,ARPC2,TMBIM6,CPSF2,HAUS2,ATXN10,PSMD1,TMED10,NDUFS1,WSB2,PGM2 | Exist in public source | NA |
lncRNA targets the skipped exon region. | -lncRNA and exonskipping events are positively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | ENSG00000236017 | ENST00000602357 | exon_skip_1234 | chr1:11658532-11658628 | -15.38 | -0.2078 | FBXO44 | ENST00000251547,ENST00000376770 | In-frame | ENSG00000236017 | ENST00000602357 | exon_skip_470077 | chr7:102397619-102397698 | -14.56 | -0.2051 | PRKRIP1 | ENST00000397912,ENST00000496391 | Frame-shift |
-lncRNA and exonskipping events are negatively correlated. |
 |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | ENSG00000236017 | ENST00000602357 | exon_skip_114365 | chr14:74290026-74290118 | -13.61 | -0.2001 | ABCD4 | ENST00000356924 | Frame-shift | ENSG00000236017 | ENST00000602357 | exon_skip_327433 | chr2:86125794-86125880 | -6.51 | -0.1302 | PTCD3 | ENST00000254630 | Frame-shift | ENSG00000236017 | ENST00000602357 | exon_skip_370518 | chr22:50247691-50247776 | -13.60 | -0.1619 | HDAC10 | ENST00000216271 | Frame-shift | ENSG00000236017 | ENST00000602357 | exon_skip_377198 | chr3:123130479-123130616 | -23.38 | -0.1916 | PDIA5 | ENST00000316218 | Frame-shift | ENSG00000236017 | ENST00000602357 | exon_skip_382458 | chr3:38131595-38131638 | -8.56 | -0.2518 | ACAA1 | ENST00000333167 | Frame-shift | ENSG00000236017 | ENST00000602357 | exon_skip_41813 | chr10:68337857-68337996 | -13.87 | -0.1401 | HNRNPH3 | ENST00000265866 | Frame-shift | ENSG00000236017 | ENST00000602357 | exon_skip_52701 | chr10:97468965-97469104 | -13.81 | -0.1291 | MMS19 | ENST00000370782,ENST00000438925 | Frame-shift | ENSG00000236017 | ENST00000602357 | exon_skip_77641 | chr11:117207066-117207160 | -12.54 | -0.2366 | PCSK7 | ENST00000320934 | Frame-shift | ENSG00000236017 | ENST00000602357 | exon_skip_110959 | chr14:20372732-20372857 | -19.50 | -0.1681 | TEP1 | ENST00000262715 | Frame-shift | ENSG00000236017 | ENST00000602357 | exon_skip_138351 | chr16:70469151-70469323 | -17.87 | -0.1077 | FUK | ENST00000288078 | Frame-shift | ENSG00000236017 | ENST00000602357 | exon_skip_139933 | chr16:90035632-90035687 | -7.60 | -0.2621 | GAS8 | ENST00000268699 | Frame-shift | ENSG00000236017 | ENST00000602357 | exon_skip_153380 | chr17:45137018-45137139 | -17.49 | -0.1666 | ACBD4 | ENST00000376955 | Frame-shift | ENSG00000236017 | ENST00000602357 | exon_skip_309204 | chr19:49181348-49181461 | -21.38 | -0.1926 | TRPM4 | ENST00000252826 | Frame-shift | ENSG00000236017 | ENST00000602357 | exon_skip_340759 | chr2:85552415-85552567 | -16.56 | -0.1335 | GGCX | ENST00000233838 | Frame-shift | ENSG00000236017 | ENST00000602357 | exon_skip_374551 | chr3:50100531-50100605 | -9.41 | -0.1384 | RBM5 | ENST00000347869 | Frame-shift | ENSG00000236017 | ENST00000602357 | exon_skip_380242 | chr3:186784961-186785101 | -11.34 | -0.1400 | EIF4A2 | ENST00000323963 | Frame-shift | ENSG00000236017 | ENST00000602357 | exon_skip_387016 | chr3:121788283-121788432 | -15.80 | -0.1170 | IQCB1 | ENST00000310864 | Frame-shift | ENSG00000236017 | ENST00000602357 | exon_skip_509943 | chrX:47175018-47175092 | -10.59 | -0.1736 | RBM10 | ENST00000377604 | Frame-shift | ENSG00000236017 | ENST00000602357 | exon_skip_4796 | chr1:41007448-41007545 | -11.67 | -0.2202 | CTPS1 | ENST00000372616,ENST00000372621 | Frame-shift | ENSG00000236017 | ENST00000602357 | exon_skip_9446 | chr1:147270931-147271005 | -7.80 | -0.1182 | CHD1L | ENST00000369258 | Frame-shift | ENSG00000236017 | ENST00000602357 | exon_skip_23423 | chr1:26294204-26294331 | -17.91 | -0.3198 | UBXN11 | ENST00000374221,ENST00000374222 | Frame-shift | ENSG00000236017 | ENST00000420411 | exon_skip_38175 | chr1:234398381-234398553 | -16.28 | -0.1030 | TARBP1 | ENST00000040877 | Frame-shift | ENSG00000236017 | ENST00000602357 | exon_skip_53559 | chr10:101793912-101793998 | -11.75 | -0.1433 | OGA | ENST00000361464 | Frame-shift | ENSG00000236017 | ENST00000419737 | exon_skip_59071 | chr11:47234756-47234934 | -19.81 | -0.1834 | DDB2 | ENST00000256996 | Frame-shift | ENSG00000236017 | ENST00000602357 | exon_skip_66482 | chr11:126274926-126275021 | -11.89 | -0.1367 | FOXRED1 | ENST00000263578 | Frame-shift | ENSG00000236017 | ENST00000602357 | exon_skip_87733 | chr12:120571190-120571291 | -14.79 | -0.1804 | RNF10 | ENST00000325954 | Frame-shift | ENSG00000236017 | ENST00000602357 | exon_skip_92074 | chr12:50142052-50142110 | -6.54 | -0.1189 | CERS5 | ENST00000317551 | Frame-shift | ENSG00000236017 | ENST00000602357 | exon_skip_95407 | chr12:95040475-95040597 | -13.09 | -0.1271 | NR2C1 | ENST00000333003 | Frame-shift | ENSG00000236017 | ENST00000602357 | exon_skip_111863 | chr14:23565815-23565892 | -20.04 | -0.2904 | AP1G2 | ENST00000308724,ENST00000397120 | Frame-shift | ENSG00000236017 | ENST00000602357 | exon_skip_111870 | chr14:23566561-23566686 | -14.41 | -0.1501 | AP1G2 | ENST00000397120 | Frame-shift | ENSG00000236017 | ENST00000602357 | exon_skip_127618 | chr15:58890280-58890461 | -19.34 | -0.1209 | SLTM | ENST00000380516 | Frame-shift | ENSG00000236017 | ENST00000602357 | exon_skip_133217 | chr16:8635038-8635079 | -9.13 | -0.3804 | METTL22 | ENST00000381920 | Frame-shift | ENSG00000236017 | ENST00000602357 | exon_skip_290158 | chr17:42953723-42953778 | -10.53 | -0.2065 | AARSD1 | ENST00000427569 | Frame-shift | ENSG00000236017 | ENST00000425740 | exon_skip_296625 | chr18:42057882-42058051 | -17.63 | -0.1168 | PIK3C3 | ENST00000262039 | Frame-shift | ENSG00000236017 | ENST00000602357 | exon_skip_300663 | chr19:1425877-1425960 | -10.66 | -0.1441 | DAZAP1 | ENST00000233078 | Frame-shift | ENSG00000236017 | ENST00000419737 | exon_skip_302168 | chr19:10680345-10680443 | -9.97 | -0.1262 | ILF3 | ENST00000590261 | Frame-shift | ENSG00000236017 | ENST00000602357 | exon_skip_326885 | chr2:74490024-74490127 | -23.37 | -0.2626 | TTC31 | ENST00000233623 | Frame-shift | ENSG00000236017 | ENST00000602357 | exon_skip_335558 | chr2:240596680-240596942 | -30.33 | -0.1223 | CAPN10 | ENST00000391984 | Frame-shift | ENSG00000236017 | ENST00000602357 | exon_skip_353131 | chr20:58669290-58669453 | -23.73 | -0.1474 | STX16 | ENST00000371141 | Frame-shift | ENSG00000236017 | ENST00000602357 | exon_skip_370525 | chr22:50250426-50250523 | -16.11 | -0.1751 | HDAC10 | ENST00000216271 | Frame-shift | ENSG00000236017 | ENST00000602357 | exon_skip_374497 | chr3:49999439-49999513 | -9.56 | -0.1386 | RBM6 | ENST00000266022 | Frame-shift | ENSG00000236017 | ENST00000602357 | exon_skip_384420 | chr3:49812647-49812738 | -16.07 | -0.2034 | UBA7 | ENST00000333486 | Frame-shift | ENSG00000236017 | ENST00000602357 | exon_skip_436035 | chr5:79656957-79657001 | -5.96 | -0.2591 | TENT2 | ENST00000296783,ENST00000428308,ENST00000453514 | Frame-shift | ENSG00000236017 | ENST00000602357 | exon_skip_438188 | chr5:141638954-141639021 | -11.88 | -0.1773 | RELL2 | ENST00000297164,ENST00000444782 | Frame-shift | ENSG00000236017 | ENST00000602357 | exon_skip_442657 | chr5:74730259-74730398 | -10.62 | -0.1221 | GFM2 | ENST00000296805,ENST00000509430 | Frame-shift | ENSG00000236017 | ENST00000602357 | exon_skip_444499 | chr5:138164086-138164133 | -7.04 | -0.2071 | BRD8 | ENST00000254900 | Frame-shift | ENSG00000236017 | ENST00000602357 | exon_skip_445390 | chr5:150403120-150403312 | -23.39 | -0.1462 | CD74 | ENST00000009530 | In-frame | ENSG00000236017 | ENST00000602357 | exon_skip_446758 | chr5:178212972-178213103 | -13.41 | -0.1064 | PHYKPL | ENST00000308158 | Frame-shift | ENSG00000236017 | ENST00000602357 | exon_skip_446770 | chr5:178215275-178215430 | -19.00 | -0.1293 | PHYKPL | ENST00000308158 | Frame-shift | ENSG00000236017 | ENST00000602357 | exon_skip_466137 | chr7:48103296-48103411 | -17.36 | -0.1736 | UPP1 | ENST00000331803,ENST00000395564 | Frame-shift | ENSG00000236017 | ENST00000602357 | exon_skip_470226 | chr7:103307595-103307708 | -11.71 | -0.1464 | PMPCB | ENST00000249269 | Frame-shift | ENSG00000236017 | ENST00000602357 | exon_skip_511212 | chrX:71555189-71555385 | -17.92 | -0.1203 | OGT | ENST00000373719 | Frame-shift | ENSG00000236017 | ENST00000602357 | exon_skip_357254 | chr20:44622587-44622652 | -10.97 | -0.1741 | ADA | ENST00000372874 | Frame-shift | ENSG00000236017 | ENST00000602357 | exon_skip_129597 | chr15:75363998-75364188 | -22.36 | -0.1944 | MAN2C1 | ENST00000267978 | Frame-shift | ENSG00000236017 | ENST00000602357 | exon_skip_5818 | chr1:45568484-45568684 | -23.48 | -0.1256 | AKR1A1 | ENST00000351829,ENST00000372070 | Frame-shift |
lncRNA targets by miRNA. |
LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
RNA A-to-I editing events in lncRNA. |
LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
Edited-associated DElncRNAs in cancer. |
LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
lncRNA regulates differentially expressed genes by function as enhancer. |
LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
 |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type | ENSG00000236017 | ENSG00000004534 | RBM6 | exon_skip_114365 | ENSG00000119688:chr14:74290026-74290118 | ABCD4 | ENST00000356924 | Frame-shift | UVM,SKCM,READ,OV,PCPG,THCA | ENSG00000236017 | ENSG00000004534 | RBM6 | exon_skip_370518 | ENSG00000100429:chr22:50247691-50247776 | HDAC10 | ENST00000216271 | Frame-shift | SARC,STAD,UVM,SKCM,READ,PRAD,PAAD,THCA | ENSG00000236017 | ENSG00000004534 | RBM6 | exon_skip_377198 | ENSG00000065485:chr3:123130479-123130616 | PDIA5 | ENST00000316218 | Frame-shift | UVM,SKCM,READ,OV,PCPG | ENSG00000236017 | ENSG00000004534 | RBM6 | exon_skip_382458 | ENSG00000060971:chr3:38131595-38131638 | ACAA1 | ENST00000333167 | Frame-shift | SARC,STAD,UVM,SKCM,READ,OV,PRAD,PCPG,PAAD,THCA | ENSG00000236017 | ENSG00000004534 | RBM6 | exon_skip_41813 | ENSG00000096746:chr10:68337857-68337996 | HNRNPH3 | ENST00000265866 | Frame-shift | STAD,UVM,SKCM,PCPG,PAAD,THCA | ENSG00000236017 | ENSG00000004534 | RBM6 | exon_skip_53559 | ENSG00000198408:chr10:101793912-101793998 | OGA | ENST00000361464 | Frame-shift | UVM,READ,PCPG,PAAD,THCA | ENSG00000236017 | ENSG00000004534 | RBM6 | exon_skip_95407 | ENSG00000120798:chr12:95040475-95040597 | NR2C1 | ENST00000333003 | Frame-shift | UVM,SKCM,PCPG,PAAD,THCA | ENSG00000236017 | ENSG00000004534 | RBM6 | exon_skip_127618 | ENSG00000137776:chr15:58890280-58890461 | SLTM | ENST00000380516 | Frame-shift | UVM,SKCM,OV,PAAD,THCA | ENSG00000236017 | ENSG00000004534 | RBM6 | exon_skip_290158 | ENSG00000266967:chr17:42953723-42953778 | AARSD1 | ENST00000427569 | Frame-shift | SKCM,READ,PRAD,PAAD,THCA | ENSG00000236017 | ENSG00000004534 | RBM6 | exon_skip_470226 | ENSG00000105819:chr7:103307595-103307708 | PMPCB | ENST00000249269 | Frame-shift | UVM,SKCM,LIHC,PRAD,PCPG,PAAD,THCA |
lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation | ENSG00000236017 | ENST00000443929 | ABHD5 | ENSG00000011198 | ENST00000413300 | -0.1883 | 427 | - | COAD | ENSG00000236017 | ENST00000425740 | ABHD5 | ENSG00000011198 | ENST00000413300 | -0.2259 | 608 | - | COAD | ENSG00000236017 | ENST00000420411 | ABHD5 | ENSG00000011198 | ENST00000413300 | -0.2259 | 376 | - | COAD | ENSG00000236017 | ENST00000419737 | ABHD5 | ENSG00000011198 | ENST00000413300 | -0.2259 | 195 | - | COAD | ENSG00000236017 | ENST00000602357 | ABHD5 | ENSG00000011198 | ENST00000413300 | -0.2259 | 96 | - | COAD |
lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | ENSG00000236017.6 | ENST00000443929.4 | 116 | 20 | 367 | ENSG00000236017.6 | ENST00000425740.5 | 122 | 365 | 0 | ENSG00000236017.6 | ENST00000420411.5 | 223 | 829 | 158 | ENSG00000236017.6 | ENST00000419737.5 | 175 | 53 | 580 | ENSG00000236017.6 | ENST00000602357.4 | 174 | 31 | 552 |
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