 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | RPAP2,VAMP1,ARL16,HELQ,CPLANE1,TCEA2,TOMM20,ERI2,ARFIP2,OXNAD1,THAP4,PRPSAP2,BOD1,MFSD8,NUP43,DNAJC27,TMEM234,GTPBP4,NBPF9,TXNL4B,BRD1,CIRBP,CENPX,LIG3,DYNC2LI1,MZF1,CMC2,UNK,C1orf56,TWNK,SIRT3,CNOT9,MAPK8IP3,LYSMD4,SUGP2,VAMP4,PPP2R3B,N4BP2L2,BCS1L,DMTF1,SLF2,L3HYPDH,TRUB2,CACYBP,ACD,UNKL,RPS27A,POLR3D,UTP18,XAB2,MRPL46,LMBR1L,TIMM17B,APH1A,TRAPPC12,BCCIP,HSDL1,PIGW,SLC25A12,ULK3,RCE1,BCL7A,DAP3,METTL5,VMP1,STK16,CENATAC,CUTA,NPEPL1,WDR5B,SNRPA,ST7L,WDR54,SAFB2,KCTD13,APTX,MSANTD2,CCDC14,ACAD8,C6orf136,COA3,ZUP1,UBE2T,SURF2,TERF2IP,ZBED5,EIF2B5,GNPAT,ATXN7L3,ACTR6,TTC14,SLC2A11,ADSS2,FAM218A,SUGP1,SPG7,TAZ,NAA80,SDHC,C19orf44,CAPN7,DAXX,SNUPN,EOLA2,USE1,TRIP4,ECHDC2,OGT,RCCD1,CCNB1IP1,TMEM198,SDF2,ERAL1,CLK2,NCBP1,UQCC2,RNF187,FAM219B,TARBP2,ILKAP,ARID4B,LYRM4,MPLKIP,CNST,POLG2,DHX34,LYPLAL1,GPATCH4,PRCC,RING1,TUT4,RBM15,ENSA,CHKB,METTL17,CEP89,C1orf43,MOCS3,GTF2F1,BBIP1,TRIM37,SNHG32,TRIM11,WDR83,OSGEP,USF1,CTC1,AGBL5,MRRF,ITGB3BP,GABPB1,RABL2A,TMEM79,ANKRD39,GTF3C2,DHPS,RPAIN,MOV10,OFD1,BTF3,ACYP1,MTFMT,SLC25A29,IQGAP3,IFT172,VTI1A,ELMO3,SLC4A1AP,XPNPEP3,HGS,ANO8,RSRC2,TTC21B,TTF1,CAMKMT,TOR3A,INO80E,NAPB,HDAC3,RAB3GAP2,C3orf62,ILF2,ZADH2,APBA3,C19orf54,ZFP62,GON4L,RUVBL1,ALKBH2,ANAPC5,ZBED8,ORMDL1,CHD9,YTHDC1,PLEKHA6,COQ7,C22orf39,FGFBP3,C12orf73,DDX51,DONSON,ORC2,PIGZ,SPOUT1,GUF1,SRSF2,C1orf52,CUL9,MRPS2,PASK,TSEN54,MLH1,LRRC37B,DHX35,ABHD16A,ATG4B,IDI1,UBE2O,SUPT20H,MRPL57,LMNTD2,CCDC191,NXF1,DCUN1D2,TAF5L,TSSK6,UQCC1,PAN2,BUB3,RABIF,FBXW9,HROB,SLC25A16,TAF1A,MOAP1,DUS3L,GIGYF1,HMGN3,STX6,ZNF14,FAM193B,RBFA,THEM4,PNKP,SLC25A28,TMCO6,STK25,ARFGAP2,XPO1,COG7,SEC31B,GLS,IPO9,ZFC3H1,KLHL17,ARHGAP33,MBTD1,DMAC2L,SP3,DNASE1,HEXD,COA6,IFT122,SDHAF2,SDE2,TUFM,HDAC8,DVL2,GAS8,RPL23A,DDX42,VCPKMT,TMEM50B,TTC3,PMVK,ARHGEF11,EIF4A1,CCDC24,DHX16,LYSMD1,KRTCAP3,POLM,PALB2,TDRP,TRIM27,BUD13,PGGT1B,GLMP,IGSF8,ERCC5,ZFP3,DNAJA3,METTL18,MCRIP1,SWT1,RABEPK,HSD17B7,PEX11B,RNF214,IQCC,JMJD4,SCNM1,UBE2Z,GTPBP1,IST1,NOB1,RAB28,ATM,THADA,ARHGEF2,SLC26A11,FLVCR1,NDUFB3,FANCL,ILF3,MRPL55,DPY19L3,SMG7,LENG8,MED7,NOA1,JMJD6,SMYD5,RANBP3,C1orf159,PRR3,FAM98C,NFU1,NICN1,CEP57,UBE2G2,TMEM14B,H3-3B,RTKN,PPOX,IP6K2,SPICE1,PIF1,POLR2C,PPWD1,DARS2,MLLT6,TRMT6,SLC30A7,PIBF1,AHI1,PHB2,NCSTN,FASTKD1,INO80D,SH3YL1,TRIM65,EIF2B4,BIVM,C20orf96,DDX55,PHF7,ADPRM,COG8,SMG5,MIX23,CAPN10,SRP68,BICDL2,GID8,AP1G2,PFDN2,GLMN,FAM111A,BANP,ACYP2,METTL21A,TMX2,FAM136A,GCFC2,THOC1,ANKMY1,WDR59,TRNT1,NUBP2,AIMP1,LCMT1,FANCA,MRPL10,ACBD6,INTS11,ODR4,UGGT2,ZMYM5,IFT140,TAMM41,RNF25,HDGF,CSNK1D,IMP4,MRPL24,RC3H1,MRM1,PCID2,ZNF44,CDK20,MAN1B1,TRAPPC4,TMEM116,TRIM13,SMG1,TAF7,LTO1,TMCO1,PIDD1,METAP1D,FAM189B,JTB,BCLAF3,NLE1,TMEM251,ANAPC2,PPM1B,IFT80,RFWD3,CEP83,GGNBP2,RFC4,NELFE,ISG20L2,METTL23,EXD3,NFKBID,C17orf75,LRIG2,PARP2,P4HTM,ABHD18,PCED1A,IWS1,MVB12A,C11orf98,ELP5,EHMT2,MTA3,PEX26,NBPF11,UBAP2L,DYNLT2,MPC2,CEP70,ACIN1,ZC3H8,METTL16,GRIPAP1,DGKE,RAB17,ENOSF1,ANKRD49,PAXBP1,DNAJC19,LEMD2,SCAMP3,PQBP1,TMEM186,H2BC21,ZNF48,COA1,GALT,MRPS23,TADA2A,FNBP4,MMS19,CCHCR1,PRMT7,KATNB1,RSRP1,COP1,REXO4,PTRH2,IL11RA,SGF29,NEK8,TBCD,DNPEP,MLLT10,CHD2,NVL,UNC50,ZSWIM1,NBPF15,TRPT1,UCHL5,SUMO2,LTB4R,VPS4A,RPE,NIT1,MRPS9,ZNF720,MED19,HEMK1,TMEM218,IFT20,TMEM199,FRS3,C2orf68,FBXL8,NDUFAF7,MFF,RBM6,TOR1AIP2,TRMT13,PDS5B,NPM3,TP53BP1,CCDC82,MCCC1,CCT7,RNF115,CRMP1,ACP1,NTHL1,MYL5,CENPL,UBAC1,ANP32E,GGT7,EPM2AIP1,UCKL1,TTC12,FKBP3,CIAPIN1,TOMM40L,SYNGAP1,LSS,PSME3IP1,TCF25,WDR27,RBM8A,SMYD3,MPPE1,UBXN11,HECTD4,EME2,NAIF1,YY1AP1,FARS2,KHDC4,CROCC,PLXNB1,CERS5,TPR,RSAD1,DHRS11,MPP3,PNISR,SFPQ,PLPP5,TMEM63A,AMT,CCDC51,GLOD4,AMZ2,NUCKS1,ENKD1,ATAD2B,ZNF10,SRSF7,VPS72,LRRC14,FBXO9,FAM126B,ABCB10,ATAT1,C11orf1,DUT,EPRS1,ESCO1,PBX2,TRMU,ANGEL2,B3GALNT2,BICRA,POMT1,NIPSNAP1,B4GALT3,STARD3,CHTF18,RIT1,MYSM1,HES1,RAB4A,YTHDF1,AKAP8,CDPF1,ASPM,MSTO1,UIMC1,TJAP1,NAT14,TAF1D,KATNBL1,MKS1,C1orf35,CEP95,NME2,PIP4P1,CDK5RAP1,SPIN3,FOXRED1,DDX52,BUD23,IFT88,TASP1,MTX1,PIGC,COX11,TBP,NPRL2,MRPL2,SUV39H2,EIPR1,CCNL2,RUNDC1,TTC30B,DCAKD,ZC4H2,EFCAB7,FBXO46,EXOC3,CLK3,AFMID,ANKRD10,BARD1,INCA1,GABBR1,CHTOP,TFAP4,LSM5,RFNG,TCEAL1,CCSAP,DDTL,MRPS30,SGSM3,UQCRH,FBXO22,MC1R,COQ4,KYAT1,CCNT2,OSBPL7,PTCD3,INTS7,STX10,PI4KB,KAT2A,CHD6,UBALD1,FTSJ3,BRWD1,TMEM223,ANKS6,CSTF3,RBM26,PLA2G6,RNPS1,PURB,TUBGCP5,TERF2,ENTR1,RBM25,C1orf131,CEBPZOS,RO60,TBCK,RHPN1,ENDOV,FLAD1,DPY30,MLH3,SP4,SLC25A44,SPRTN,SETD6,KANSL1L,SF3B6,POLI,TTC30A,ELP6,PRIM1,LIN9,PGAP2,PRPF39,TRAM1L1,ERMARD,KIAA0753,DTL,MAD2L1BP,TRIM45,SRRM2,DCAF17,GEMIN6,E2F6,MIB2,WHRN,RNF114,LCOR,PHF1,ZNF717,GORAB,HDAC10,DEAF1,HEXIM2,TGIF2,CEP44,CENPC,KLC4,HSF4,RBM41,PROSER3,ARGLU1,ANKS3,NOXA1,YJEFN3,NDUFA10,CIAO1,POLR2D,CCNL1,ANKRD54,USP19,ANKRA2,C2orf49,RAD51C,PLEKHA3,LAMTOR1,VMAC,KRI1,CELF1,PSPC1,TMEM161B,SDCCAG8,MADD,RBM45,NFKBIL1,MICALL2,HLCS,YAE1,ACTR1B,LBHD1,PMS1,FAM160A2,POLR1C,NUDT5,DENND1B,UCK2,GEMIN2,PSMG4,ZGPAT,DDX31,METTL6,HDHD5,TIA1,PRUNE1,HOOK2,ZNF83,MAIP1,HCN3,TMUB2,RPS6KC1,KANSL1,ZMYM3,DNMT3A,ABCD4,SYNJ1,BRAT1,ERCC3,PSMG3,PARP1,DGKQ,WDR46,RUSF1,RBBP5,VPS33B,DDX5,DTX3,CSKMT,KPTN,E2F1,RNF215,FASTKD2,AAMP,CKS1B,NAT9,LIPT1,CPNE1,NTAQ1,LUC7L,NUDCD2,PCNA,LSM2,F11R,PNN,CWF19L1,TMEM25,COA5,DSN1,BRD8,IRF2BP2,LUC7L2,NIF3L1,ERCC8,UBE2V1,PPAN,CENPJ,C14orf93,BBS4,LRSAM1,DPH7,CBX8,NSMCE4A,RETREG2,MAPKAPK5,MRPL43,POLR3F,CEP131,KMT2A,REV1,FARSA,NEURL4,BROX,HINFP,XPA,PCBD2,NR2C1,CRTC2,APBB3,GPS1,ADAT1,CNTROB,CYTH2,THTPA,WDR74,MED24,ETV3,RUFY2,TLCD1,TDRKH,RWDD2A,ADAL,TRIT1,TONSL,ZDHHC21,NOL8,IMMP1L,NUP133,SRRT,SSR2,CEBPZ,AGAP6,WRAP73,TMEM97,GABPB2,DNAAF2,EEF2KMT,NPLOC4,TAF6L,CFDP1,TICAM1,SLC29A2,RBM39,EDC3,ODF2L,TATDN3,SLC25A27,MRPS26,HDDC3,PGS1,MDC1,CCT3,TMEM267,IMP3,NME7,PYGO2,CHCHD5,NRF1,DCTN3,COQ8B,RRNAD1,KAT7,ZXDC,GBA,IQCB1,KAT8,INTS3,TRIM39,PIGL,ZC3H7A,COQ8A,AASDH,RP11-523H20.5,RABGAP1L,KIAA0895L,USP39,PAAF1,ARV1,DDX39A,HSD17B8,NDUFAF6,ZNF77,ATAD3B,SAMD10,GPATCH2,NOL10,MUTYH,DCAF8,OBSL1,PHYKPL,SF3B1,CSE1L,POFUT2,TMEM9,ZBTB5,HAX1,PYCR2,NUP42,IFT27,RECQL5,PAN3,CEP350,PHKG2,NARF,PMF1,MED28,SARS2,LARP7,PIGM,ASB6,AKT2,DDX59,SENP3,SUPT7L,NT5C3B,CENPT,OSGEPL1,S100PBP,RBM4,VAMP2,MTG1,USP24,FAM76B,POGZ,ANAPC7,GTPBP3,TFB2M,UBE2Q1,C2CD2L,PSMD3,RBMX,RBM4B,TSC2,EXOG,TMEM99,PCNT,C21orf58,POLR3C,TAF1C,RBM14,ADAT2,WDSUB1,TMEM143,ORC4,MBD1,GPKOW,TEFM,SURF6,SAMD1,FUBP1,AAAS,RHBDF1,GEMIN4,THAP9,CLNS1A,SPHK2,EZH1,MRNIP,THAP6,SS18L1,SLC35B1,ELMOD3,DHX15,DDX17,PSMA4,GGPS1,ABL2,ING4,NSUN5,HAUS5,KLHL12,SENP7,MTRF1,RAD52,DNAJC7,THYN1,LIAS,DYRK1A,CTDSPL2,CEP290,SDR39U1,TRPM7,MCM8,TELO2,IFT46,CDAN1,COIL,WSB1,GPALPP1,HAUS4,COX15,TRAIP,LRFN4,STK19,HTRA2,AUP1,ATAD5,PHIP,C12orf76,POLL,SF3B4,FAM228B,WDR61,USP21,ALS2,TIGD1,KLC1,CNNM3,RBM10,E2F4,GPS2,TRIM52,NOL12,ARL8A,WDR45B,SPIN2B,CRYZL1,SUPT3H,CLASRP,ZC3HAV1L,DEDD,CWC25,STK36,TRAF4,ANKRD16,TTC32,TM2D1,UMPS,GOLGA8B,YOD1,COASY,UTP6,SPATA33,STRADA,CBR4,CBWD2,TIMM29,EIF2D,DIDO1,BAG6,GOLGA8A,TEX10,CYP2R1,PAM16,C1D,SETD4,SPATA24,CPSF3,KLHDC3,TYSND1,TSNAX,AARSD1,DUSP28,BOLA1,RBM5,DTD1,NKTR,CCT4,SAP30BP,CNP,RAD18,FARP2,ZNF17,TRMT61B,TTLL3,DOT1L,C3orf33,ZNF84,PRPSAP1,RXRB,CCP110,PARP6,TUBD1,GNL1,PDCD6,WDR33,WDR26,RNF5,NDUFV3,PACC1,NUDT17,C17orf80,TRA2B,MDP1,PMPCA,REX1BD,MRPS14,LRP5L,DENND4B,RPRD2,NAE1,MAN2C1,DXO,PDCD7,USPL1,NCAPD3,USP20,MRPL38,ANKRD13D,LIG1,NELFA,PRPF4B,EMC8,INTS4,MED13,CCDC57,RABL2B,TRAPPC2,LRRC45,PIP5K1A,SIRT7,HINT1,MRFAP1L1 | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | ANO6 | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
 |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000235919 | ENST00000452809 | exon_skip_5818 | chr1:45568484-45568684 | -24.02 | -0.1320 | AKR1A1 | ENST00000351829,ENST00000372070 | Frame-shift | | ENSG00000235919 | ENST00000452809 | exon_skip_11029 | chr1:154989559-154989707 | -22.46 | -0.1953 | FLAD1 | ENST00000292180 | Frame-shift | | ENSG00000235919 | ENST00000452809 | exon_skip_374552 | chr3:50104247-50104308 | -8.80 | -0.2200 | RBM5 | ENST00000347869 | Frame-shift | | ENSG00000235919 | ENST00000452809 | exon_skip_382458 | chr3:38131595-38131638 | -9.94 | -0.2367 | ACAA1 | ENST00000333167 | Frame-shift | | ENSG00000235919 | ENST00000452809 | exon_skip_153767 | chr17:48057031-48057121 | -17.49 | -0.2301 | NFE2L1 | ENST00000362042 | In-frame | | ENSG00000235919 | ENST00000452809 | exon_skip_41813 | chr10:68337857-68337996 | -17.18 | -0.1311 | HNRNPH3 | ENST00000265866 | Frame-shift | | ENSG00000235919 | ENST00000452809 | exon_skip_380242 | chr3:186784961-186785101 | -15.14 | -0.1147 | EIF4A2 | ENST00000323963 | Frame-shift | | ENSG00000235919 | ENST00000452809 | exon_skip_74009 | chr11:64773429-64773505 | -11.96 | -0.1929 | SF1 | ENST00000377390 | Frame-shift |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source | | ENSG00000235919 | hsa-mir-22 | ENST00000456633 | chr1:155562251-155562331 | 166.00 | -91.78 | 83 | NA | | ENSG00000235919 | hsa-mir-22 | ENST00000456633 | chr1:155562548-155562637 | 165.00 | -92.11 | 81 | NA | | ENSG00000235919 | hsa-mir-22 | ENST00000456633 | chr1:155562711-155562796 | 165.00 | -90.46 | 87 | NA | | ENSG00000235919 | hsa-mir-22 | ENST00000456633 | chr1:155562043-155562123 | 149.00 | -84.26 | 75 | NA | | ENSG00000235919 | hsa-mir-22 | ENST00000456633 | chr1:155562842-155562919 | 141.00 | -63.44 | 75 | NA | | ENSG00000235919 | hsa-mir-22 | ENST00000452809 | chr1:155562280-155562368 | 173.00 | -89.14 | 87 | NA | | ENSG00000235919 | hsa-mir-22 | ENST00000452809 | chr1:155562442-155562527 | 165.00 | -90.46 | 87 | NA | | ENSG00000235919 | hsa-mir-22 | ENST00000452809 | chr1:155562864-155562949 | 160.00 | -84.10 | 84 | NA | | ENSG00000235919 | hsa-mir-22 | ENST00000452809 | chr1:155562626-155562717 | 158.00 | -77.93 | 87 | NA |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation | | ENSG00000235919 | ENSG00000005448 | WDR54 | ACC,CHOL,GBM,KICH,LAML,LGG,PAAD | CHOL | KICH | | ENSG00000235919 | ENSG00000007384 | RHBDF1 | ACC,CHOL,KIRC,LAML,READ | CHOL | | | ENSG00000235919 | ENSG00000057935 | MTA3 | ACC,CHOL,HNSC,KICH,STAD,THCA | CHOL | | | ENSG00000235919 | ENSG00000092978 | GPATCH2 | ACC,CHOL,COAD,ESCA,HNSC,KICH,KIRC,KIRP,LUAD,LUSC,PCPG,SKCM,STAD,UCEC | CHOL | | | ENSG00000235919 | ENSG00000105486 | LIG1 | ACC,CHOL,PRAD,READ,SARC | CHOL | | | ENSG00000235919 | ENSG00000107833 | NPM3 | ACC,CHOL,LAML,LGG,THYM | CHOL | | | ENSG00000235919 | ENSG00000108423 | TUBD1 | ACC,GBM,KICH,SARC,STAD | | KICH | | ENSG00000235919 | ENSG00000109084 | TMEM97 | ACC,GBM,KICH,LGG,THYM | | KICH | | ENSG00000235919 | ENSG00000110987 | BCL7A | ACC,CHOL,KIRC,LGG,PCPG | CHOL | | | ENSG00000235919 | ENSG00000116521 | SCAMP3 | ACC,BRCA,CHOL,DLBC,ESCA,HNSC,KICH,LGG,LUSC,PAAD,PCPG,READ,STAD,TGCT,THYM,UCEC | CHOL | | | ENSG00000235919 | ENSG00000116580 | GON4L | ACC,BLCA,BRCA,CHOL,COAD,ESCA,HNSC,KICH,KIRC,LUAD,LUSC,PCPG,SARC,SKCM,STAD,UCEC,UCS | CHOL | | | ENSG00000235919 | ENSG00000116584 | ARHGEF2 | ACC,CHOL,DLBC,KICH,LGG,UCEC,UCS | CHOL | | | ENSG00000235919 | ENSG00000119640 | ACYP1 | ACC,CHOL,COAD,DLBC,ESCA,GBM,KICH,KIRC,KIRP,LAML,LUAD,LUSC,PAAD,PRAD,SARC,STAD,THCA | CHOL | | | ENSG00000235919 | ENSG00000119772 | DNMT3A | ACC,CHOL,HNSC,KICH,KIRC,STAD | CHOL | | | ENSG00000235919 | ENSG00000120334 | CENPL | ACC,CHOL,COAD,DLBC,ESCA,GBM,LUSC,READ,SARC,SKCM,STAD,TGCT,UCEC | CHOL | | | ENSG00000235919 | ENSG00000121289 | CEP89 | ACC,CHOL,DLBC,KICH,KIRP,LAML,READ,SKCM,UCEC | CHOL | | | ENSG00000235919 | ENSG00000123136 | DDX39A | ACC,CHOL,GBM,LGG,LUSC,READ | CHOL | | | ENSG00000235919 | ENSG00000124006 | OBSL1 | ACC,KICH,LAML,LGG,PAAD,UCS | | KICH | | ENSG00000235919 | ENSG00000125319 | HROB | ACC,CHOL,GBM,LUSC,READ,STAD | CHOL | | | ENSG00000235919 | ENSG00000125459 | MSTO1 | ACC,BLCA,BRCA,CHOL,DLBC,ESCA,GBM,HNSC,KICH,LAML,LGG,LUSC,OV,PAAD,READ,SARC,SKCM,STAD,TGCT,THYM,UCEC | CHOL | | | ENSG00000235919 | ENSG00000132004 | FBXW9 | ACC,CHOL,KICH,LAML,PRAD,READ,THCA,THYM | CHOL | | | ENSG00000235919 | ENSG00000132475 | H3-3B | ACC,CHOL,KICH,KIRP,PRAD | | KICH | | ENSG00000235919 | ENSG00000132680 | KHDC4 | ACC,BLCA,BRCA,CHOL,COAD,DLBC,ESCA,GBM,HNSC,KICH,KIRC,KIRP,LAML,LGG,LUAD,LUSC,MESO,OV,PAAD,PCPG,PRAD,READ,SARC,SKCM,STAD,TGCT,UCEC,UCS | CHOL | | | ENSG00000235919 | ENSG00000135632 | SMYD5 | ACC,CHOL,HNSC,KICH,LAML,LGG,PAAD | CHOL | | | ENSG00000235919 | ENSG00000135823 | STX6 | ACC,BLCA,CHOL,COAD,LGG,LUAD,MESO,SKCM | CHOL | | | ENSG00000235919 | ENSG00000137343 | ATAT1 | ACC,CHOL,COAD,ESCA,GBM,HNSC,KICH,KIRC,KIRP,LAML,LGG,PAAD,READ,SKCM,STAD | CHOL | KICH | | ENSG00000235919 | ENSG00000139624 | CERS5 | ACC,CHOL,COAD,HNSC,KICH,LAML,LGG,LUAD,STAD | CHOL | | | ENSG00000235919 | ENSG00000141570 | CBX8 | ACC,CHOL,GBM,HNSC,KICH,LGG,LUSC | CHOL | | | ENSG00000235919 | ENSG00000141858 | SAMD1 | ACC,CHOL,GBM,LGG,READ | CHOL | | | ENSG00000235919 | ENSG00000142330 | CAPN10 | ACC,BRCA,CHOL,COAD,KIRC,LAML,LGG,PAAD,PRAD,READ,STAD | CHOL | | | ENSG00000235919 | ENSG00000143156 | NME7 | ACC,CHOL,DLBC,KICH,PCPG,THYM | CHOL | KICH | | ENSG00000235919 | ENSG00000143179 | UCK2 | ACC,CHOL,DLBC,LGG,LUSC,PCPG,READ | CHOL | | | ENSG00000235919 | ENSG00000143321 | HDGF | ACC,CHOL,DLBC,ESCA,HNSC,KICH,LUSC,PCPG,STAD,THYM,UCEC | | KICH | | ENSG00000235919 | ENSG00000143401 | ANP32E | ACC,CHOL,ESCA,HNSC,KICH,PCPG,SARC,SKCM,TGCT | | KICH | | ENSG00000235919 | ENSG00000143476 | DTL | ACC,CHOL,LUSC,READ,SARC,TGCT | CHOL | | | ENSG00000235919 | ENSG00000143748 | NVL | ACC,CHOL,COAD,ESCA,KICH,KIRP,LGG,LUAD,LUSC,PCPG,SKCM,STAD,TGCT | CHOL | | | ENSG00000235919 | ENSG00000149636 | DSN1 | ACC,CHOL,ESCA,GBM,SARC,STAD | CHOL | | | ENSG00000235919 | ENSG00000160051 | IQCC | ACC,CHOL,ESCA,GBM,KICH,KIRC,KIRP,LAML,LUAD,PAAD,PRAD,SARC,STAD,THCA | CHOL | | | ENSG00000235919 | ENSG00000160767 | FAM189B | ACC,BLCA,BRCA,CHOL,ESCA,HNSC,LGG,LUSC,PAAD,PCPG,READ,THCA,THYM,UCEC | CHOL | | | ENSG00000235919 | ENSG00000160818 | GPATCH4 | ACC,CHOL,DLBC,ESCA,HNSC,KICH,LUSC,PCPG,SKCM,STAD,TGCT,THYM,UCEC | CHOL | | | ENSG00000235919 | ENSG00000160949 | TONSL | ACC,CHOL,LGG,READ,THCA | CHOL | | | ENSG00000235919 | ENSG00000162769 | FLVCR1 | ACC,CHOL,COAD,ESCA,HNSC,LGG,LUAD,LUSC,PAAD,READ,SARC,SKCM | CHOL | | | ENSG00000235919 | ENSG00000162885 | B3GALNT2 | ACC,CHOL,COAD,KICH,LUAD,UCS | CHOL | | | ENSG00000235919 | ENSG00000163156 | SCNM1 | ACC,CHOL,DLBC,ESCA,HNSC,KICH,LGG,LUSC,SKCM,STAD,TGCT | CHOL | | | ENSG00000235919 | ENSG00000163159 | VPS72 | ACC,CHOL,DLBC,ESCA,GBM,HNSC,KICH,LAML,LGG,LUSC,PAAD,PCPG,READ,SARC,SKCM,STAD,TGCT,UCEC | CHOL | | | ENSG00000235919 | ENSG00000163348 | PYGO2 | ACC,BLCA,BRCA,CESC,CHOL,DLBC,ESCA,HNSC,KICH,KIRC,LUSC,MESO,PAAD,PCPG,READ,SARC,STAD,TGCT,UCEC,UCS | CHOL | | | ENSG00000235919 | ENSG00000163472 | TMEM79 | ACC,CHOL,DLBC,GBM,KICH,KIRC,LGG,PCPG,SARC | CHOL | | | ENSG00000235919 | ENSG00000163479 | SSR2 | ACC,CHOL,ESCA,HNSC,KICH,LGG,LUSC,SKCM | CHOL | | | ENSG00000235919 | ENSG00000163918 | RFC4 | ACC,CHOL,DLBC,GBM,LUSC | CHOL | | | ENSG00000235919 | ENSG00000165138 | ANKS6 | ACC,CHOL,HNSC,KICH,KIRC,LGG,PAAD | CHOL | | | ENSG00000235919 | ENSG00000165609 | NUDT5 | ACC,CHOL,COAD,HNSC,KICH | | KICH | | ENSG00000235919 | ENSG00000166012 | TAF1D | ACC,CHOL,COAD,HNSC,LAML,LGG,LUAD,PAAD,PCPG,STAD,UCS | CHOL | | | ENSG00000235919 | ENSG00000168411 | RFWD3 | ACC,CHOL,KICH,KIRC,LUSC,PCPG,SARC | CHOL | | | ENSG00000235919 | ENSG00000168495 | POLR3D | ACC,CHOL,LAML,LGG,THYM | CHOL | | | ENSG00000235919 | ENSG00000171806 | METTL18 | ACC,CHOL,DLBC,ESCA,HNSC,KICH,LGG,LUSC,PCPG,SKCM,STAD | CHOL | | | ENSG00000235919 | ENSG00000173207 | CKS1B | ACC,BLCA,CHOL,DLBC,ESCA,HNSC,KICH,LUSC,PAAD,PCPG,READ,SARC,SKCM,STAD,TGCT,THYM | CHOL | | | ENSG00000235919 | ENSG00000173653 | RCE1 | ACC,CHOL,KICH,LGG,PAAD,READ | CHOL | | | ENSG00000235919 | ENSG00000173786 | CNP | ACC,CHOL,KICH,KIRC,PCPG,THYM | | KICH | | ENSG00000235919 | ENSG00000178093 | TSSK6 | ACC,CHOL,KICH,KIRP,LGG,THCA | CHOL | | | ENSG00000235919 | ENSG00000182173 | TSEN54 | ACC,CHOL,GBM,HNSC,KICH,KIRC,KIRP,LGG,LUSC,PAAD,PRAD,READ,UCS | CHOL | | | ENSG00000235919 | ENSG00000183814 | LIN9 | ACC,CHOL,COAD,LUAD,LUSC,SARC,SKCM,STAD,TGCT,UCS | CHOL | | | ENSG00000235919 | ENSG00000184678 | H2BC21 | ACC,CHOL,DLBC,ESCA,HNSC,KICH,KIRC,LAML,LUSC,MESO,OV,PAAD,SARC,SKCM,STAD,UCS | CHOL | | | ENSG00000235919 | ENSG00000197119 | SLC25A29 | ACC,CHOL,ESCA,HNSC,KICH,KIRC,LAML,MESO,PAAD,PRAD | CHOL | | | ENSG00000235919 | ENSG00000204308 | RNF5 | ACC,CHOL,ESCA,GBM,KICH,LGG | | KICH | | ENSG00000235919 | ENSG00000204371 | EHMT2 | ACC,CHOL,KICH,LAML,LGG | CHOL | | | ENSG00000235919 | ENSG00000204387 | SNHG32 | ACC,CHOL,LAML,LGG,PAAD | CHOL | | | ENSG00000235919 | ENSG00000205629 | LCMT1 | ACC,CHOL,GBM,LGG,PAAD | CHOL | | | ENSG00000235919 | ENSG00000214756 | CSKMT | ACC,CHOL,GBM,HNSC,PAAD | CHOL | | | ENSG00000235919 | ENSG00000219626 | FAM228B | ACC,CHOL,KICH,KIRP,LAML,LUAD | | KICH | | ENSG00000235919 | ENSG00000230124 | ACBD6 | ACC,BLCA,BRCA,CHOL,COAD,DLBC,ESCA,HNSC,KICH,KIRP,LAML,LGG,LUAD,LUSC,MESO,PAAD,PCPG,PRAD,READ,SARC,SKCM,STAD,TGCT,THCA,UCEC | CHOL | | | ENSG00000235919 | ENSG00000243678 | NME2 | ACC,CHOL,KICH,PAAD,THYM | CHOL | | | ENSG00000235919 | ENSG00000068885 | IFT80 | BLCA,CHOL,COAD,ESCA,KICH,KIRC,LUAD,LUSC,SARC,STAD | CHOL | | | ENSG00000235919 | ENSG00000143569 | UBAP2L | BLCA,CHOL,DLBC,ESCA,KIRC,LUSC,PCPG,READ,SARC,STAD,TGCT,UCEC | CHOL | | | ENSG00000235919 | ENSG00000167523 | SPATA33 | BLCA,CHOL,COAD,DLBC,ESCA,HNSC,KIRP,LUAD,PAAD,SARC,THCA | CHOL | | | ENSG00000235919 | ENSG00000174943 | KCTD13 | BLCA,BRCA,CHOL,ESCA,HNSC,KIRC,KIRP,LAML,LGG,OV,PAAD,READ | CHOL | | | ENSG00000235919 | ENSG00000062716 | VMP1 | BRCA,CHOL,COAD,HNSC,KICH,KIRC,KIRP,LUAD,LUSC,PRAD,READ,STAD | | KICH | | ENSG00000235919 | ENSG00000095397 | WHRN | BRCA,CHOL,KIRC,KIRP,THCA | CHOL | | | ENSG00000235919 | ENSG00000115687 | PASK | BRCA,CHOL,COAD,LUAD,READ,STAD | CHOL | | | ENSG00000235919 | ENSG00000127586 | CHTF18 | BRCA,CHOL,ESCA,HNSC,KIRC,KIRP,LAML,LGG,PRAD,READ,STAD,UCS | CHOL | | | ENSG00000235919 | ENSG00000138834 | MAPK8IP3 | BRCA,CHOL,ESCA,KIRC,KIRP,LUAD,PAAD,PRAD,READ,SKCM,STAD,UCS | CHOL | | | ENSG00000235919 | ENSG00000143258 | USP21 | BRCA,CHOL,DLBC,ESCA,GBM,HNSC,KICH,KIRC,KIRP,LAML,LGG,LUAD,LUSC,MESO,PAAD,PCPG,READ,SARC,SKCM,STAD,THCA,UCEC | CHOL | | | ENSG00000235919 | ENSG00000160298 | C21orf58 | BRCA,CHOL,COAD,LGG,LUSC,PAAD,PRAD,SKCM,STAD | CHOL | | | ENSG00000235919 | ENSG00000164877 | MICALL2 | BRCA,CHOL,PAAD,READ,STAD | CHOL | | | ENSG00000235919 | ENSG00000168096 | ANKS3 | BRCA,CHOL,ESCA,GBM,HNSC,LAML,LGG,LUAD,PAAD,PRAD,READ,SKCM,STAD | CHOL | | | ENSG00000235919 | ENSG00000197774 | EME2 | BRCA,CHOL,KIRC,KIRP,LGG,LUAD,PAAD,PRAD,READ,SKCM,STAD,TGCT,UCS | CHOL | | | ENSG00000235919 | ENSG00000204681 | GABBR1 | BRCA,CHOL,COAD,HNSC,KICH,KIRC,PAAD,SKCM | CHOL | | | ENSG00000235919 | ENSG00000214021 | TTLL3 | BRCA,CHOL,COAD,KIRC,LUAD,READ,SARC,SKCM | CHOL | | | ENSG00000235919 | ENSG00000273899 | NOL12 | BRCA,CHOL,DLBC,HNSC,KIRC,LAML,LGG,LUSC,PAAD,PRAD,READ | CHOL | | | ENSG00000235919 | ENSG00000004777 | ARHGAP33 | CESC,CHOL,LAML,LGG,PAAD,READ,SARC | CHOL | | | ENSG00000235919 | ENSG00000006025 | OSBPL7 | CHOL,KICH,KIRC,KIRP,LAML,LGG,PAAD,PCPG,READ | CHOL | | | ENSG00000235919 | ENSG00000032742 | IFT88 | CHOL,COAD,KICH,MESO,PAAD,STAD,THCA | | KICH | | ENSG00000235919 | ENSG00000046651 | OFD1 | CHOL,ESCA,LAML,LUAD,PAAD,STAD | CHOL | | | ENSG00000235919 | ENSG00000054282 | SDCCAG8 | CHOL,COAD,HNSC,KICH,KIRC,MESO,OV,PCPG | CHOL | | | ENSG00000235919 | ENSG00000067369 | TP53BP1 | CHOL,KIRC,LAML,LUAD,PCPG | CHOL | | | ENSG00000235919 | ENSG00000072832 | CRMP1 | CHOL,GBM,KICH,KIRC,LGG,PAAD,PCPG | CHOL | | | ENSG00000235919 | ENSG00000073536 | NLE1 | CHOL,GBM,LAML,LGG,THYM | CHOL | | | ENSG00000235919 | ENSG00000095066 | HOOK2 | CHOL,KIRC,LAML,LGG,PAAD,PCPG,PRAD,READ,SARC,STAD,THCA | CHOL | | | ENSG00000235919 | ENSG00000102977 | ACD | CHOL,GBM,HNSC,LAML,LGG,PAAD | CHOL | | | ENSG00000235919 | ENSG00000105443 | CYTH2 | CHOL,KICH,LAML,PAAD,PRAD | CHOL | | | ENSG00000235919 | ENSG00000115419 | GLS | CHOL,COAD,KICH,LUAD,STAD | CHOL | | | ENSG00000235919 | ENSG00000120370 | GORAB | CHOL,COAD,ESCA,KICH,LUAD,SKCM,STAD,UCS | CHOL | | | ENSG00000235919 | ENSG00000122417 | ODF2L | CHOL,COAD,KICH,KIRC,KIRP,LAML,LUAD,STAD | CHOL | KICH | | ENSG00000235919 | ENSG00000125885 | MCM8 | CHOL,COAD,KICH,KIRC,PCPG,STAD | CHOL | | | ENSG00000235919 | ENSG00000130590 | SAMD10 | CHOL,GBM,LAML,LGG,PAAD | CHOL | | | ENSG00000235919 | ENSG00000134253 | TRIM45 | CHOL,KICH,LUAD,SARC,UCEC,UCS | CHOL | | | ENSG00000235919 | ENSG00000135845 | PIGC | CHOL,DLBC,ESCA,HNSC,KICH,LUSC,MESO,PCPG,SKCM,TGCT,UCEC | CHOL | | | ENSG00000235919 | ENSG00000138002 | IFT172 | CHOL,ESCA,KICH,KIRC,LAML,PAAD | CHOL | | | ENSG00000235919 | ENSG00000138036 | DYNC2LI1 | CHOL,ESCA,HNSC,KICH,KIRC,LAML,THCA | CHOL | KICH | | ENSG00000235919 | ENSG00000141013 | GAS8 | CHOL,ESCA,HNSC,LUAD,PAAD,STAD,THCA,UCS | CHOL | | | ENSG00000235919 | ENSG00000141569 | TRIM65 | CHOL,KICH,LAML,PCPG,THYM | CHOL | | | ENSG00000235919 | ENSG00000143322 | ABL2 | CHOL,COAD,LUAD,PCPG,UCEC | CHOL | | | ENSG00000235919 | ENSG00000143498 | TAF1A | CHOL,COAD,HNSC,LUSC,PCPG,SKCM,STAD | CHOL | | | ENSG00000235919 | ENSG00000143919 | CAMKMT | CHOL,COAD,KICH,KIRC,LUAD,STAD | | KICH | | ENSG00000235919 | ENSG00000144134 | RABL2A | CHOL,ESCA,KIRC,KIRP,LAML,PAAD,PRAD,THCA | CHOL | | | ENSG00000235919 | ENSG00000144445 | KANSL1L | CHOL,COAD,KICH,LUAD,PCPG | CHOL | | | ENSG00000235919 | ENSG00000146858 | ZC3HAV1L | CHOL,COAD,KICH,READ,UCS | CHOL | KICH | | ENSG00000235919 | ENSG00000150433 | TMEM218 | CHOL,GBM,KICH,KIRC,KIRP,PRAD,THCA,UCS | | KICH | | ENSG00000235919 | ENSG00000151849 | CENPJ | CHOL,COAD,ESCA,LUAD,STAD | CHOL | | | ENSG00000235919 | ENSG00000151881 | TMEM267 | CHOL,ESCA,KICH,PCPG,THCA | CHOL | | | ENSG00000235919 | ENSG00000157992 | KRTCAP3 | CHOL,HNSC,LAML,LUSC,READ,THYM | CHOL | | | ENSG00000235919 | ENSG00000158062 | UBXN11 | CHOL,DLBC,ESCA,KICH,PRAD,READ,THCA | CHOL | KICH | | ENSG00000235919 | ENSG00000158106 | RHPN1 | CHOL,HNSC,LAML,PAAD,READ,STAD,UCS | CHOL | | | ENSG00000235919 | ENSG00000159239 | RP11-523H20.5 | CHOL,ESCA,KICH,PAAD,STAD | CHOL | KICH | | ENSG00000235919 | ENSG00000161647 | MPP3 | CHOL,HNSC,LGG,LUAD,LUSC,PAAD | CHOL | | | ENSG00000235919 | ENSG00000163482 | STK36 | CHOL,COAD,ESCA,KICH,KIRC,LAML,LUAD,PAAD,PRAD,SKCM,STAD | CHOL | | | ENSG00000235919 | ENSG00000163913 | IFT122 | CHOL,KICH,LAML,PAAD,PRAD | | KICH | | ENSG00000235919 | ENSG00000164050 | PLXNB1 | CHOL,KICH,KIRC,PAAD,PRAD | | KICH | | ENSG00000235919 | ENSG00000167595 | PROSER3 | CHOL,KICH,KIRC,LAML,READ,SARC | CHOL | | | ENSG00000235919 | ENSG00000167615 | LENG8 | CHOL,COAD,KIRC,KIRP,LAML,PAAD,PRAD,READ,SKCM,STAD,UCS | CHOL | | | ENSG00000235919 | ENSG00000173681 | BCLAF3 | CHOL,COAD,KIRC,LGG,LUAD | CHOL | | | ENSG00000235919 | ENSG00000178761 | FAM219B | CHOL,KICH,LAML,PAAD,PCPG | CHOL | | | ENSG00000235919 | ENSG00000185158 | LRRC37B | CHOL,KIRC,LGG,LUAD,PAAD,PCPG,STAD | CHOL | | | ENSG00000235919 | ENSG00000185917 | SETD4 | CHOL,COAD,DLBC,HNSC,KIRC,KIRP,LAML,LGG,PAAD,PRAD,SKCM,STAD,THCA | CHOL | | | ENSG00000235919 | ENSG00000186364 | NUDT17 | CHOL,KICH,LAML,LUSC,PAAD,PCPG,UCEC | CHOL | | | ENSG00000235919 | ENSG00000187535 | IFT140 | CHOL,ESCA,KICH,KIRC,LAML,PAAD,PCPG,THCA | CHOL | KICH | | ENSG00000235919 | ENSG00000196476 | C20orf96 | CHOL,ESCA,KICH,LAML,PCPG,SKCM,THCA | CHOL | | | ENSG00000235919 | ENSG00000196659 | TTC30B | CHOL,COAD,ESCA,KICH,STAD,THCA | CHOL | KICH | | ENSG00000235919 | ENSG00000197283 | SYNGAP1 | CHOL,KICH,KIRC,LAML,SKCM | CHOL | | | ENSG00000235919 | ENSG00000197557 | TTC30A | CHOL,COAD,ESCA,KICH,STAD,THCA | | KICH | | ENSG00000235919 | ENSG00000198707 | CEP290 | CHOL,COAD,LUAD,PCPG,STAD | CHOL | | | ENSG00000235919 | ENSG00000198863 | RUNDC1 | CHOL,KICH,KIRC,PAAD,STAD,THYM | CHOL | | | ENSG00000235919 | ENSG00000198920 | KIAA0753 | CHOL,KICH,KIRC,LAML,LUAD | CHOL | | | ENSG00000235919 | ENSG00000203965 | EFCAB7 | CHOL,ESCA,KIRC,KIRP,LAML,LUAD,SARC | CHOL | | | ENSG00000235919 | ENSG00000204130 | RUFY2 | CHOL,COAD,KICH,KIRC,UCS | CHOL | | | ENSG00000235919 | ENSG00000215440 | NPEPL1 | CHOL,HNSC,LUSC,MESO,PAAD,PRAD,READ | CHOL | | | ENSG00000235919 | ENSG00000221886 | ZBED8 | CHOL,COAD,GBM,KIRP,LAML,LGG,OV,SARC,SKCM,THCA,UCS | CHOL | | | ENSG00000235919 | ENSG00000250067 | YJEFN3 | CHOL,KIRC,LAML,LGG,PAAD,SARC,UCS | CHOL | | | ENSG00000235919 | ENSG00000258839 | MC1R | CHOL,ESCA,LGG,LUAD,LUSC,PAAD | CHOL | | | ENSG00000235919 | ENSG00000275023 | MLLT6 | CHOL,KICH,KIRC,KIRP,LAML,LGG,PAAD,PCPG,PRAD | CHOL | | | ENSG00000235919 | ENSG00000135541 | AHI1 | COAD,KICH,KIRC,KIRP,UCS | | KICH | | ENSG00000235919 | ENSG00000121310 | ECHDC2 | KICH,KIRP,LUAD,PAAD,PRAD,SARC,THCA | | KICH | | ENSG00000235919 | ENSG00000163050 | COQ8A | KICH,LAML,LGG,SKCM,THCA,THYM | | KICH | | ENSG00000235919 | ENSG00000174599 | TRAM1L1 | KICH,KIRC,PCPG,THCA,UCEC | | KICH |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000235919.4 | ENST00000456633.1 | 83 | 15 | 266 | | ENSG00000235919.4 | ENST00000452809.1 | 145 | 143 | 580 |
|
