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lncRNA: ENSG00000235529 |
Summary for AGAP1-IT1 |
 Gene summary |
| Gene information | Ensembl ID | ENSG00000235529 | Gene symbol | AGAP1-IT1 |
| Gene name | AGAP1 intronic transcript 1 | |
| HGNC | 41427 | |
| Entrez ID | 100506749 | |
| Gene type | sense_intronic | |
| Synonyms | AGAP1-IT1|02q37.2 | |
| UniProtAcc |
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Structure and expression level for AGAP1-IT1 |
| AS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure. |
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| Differentially expressed gene analysis between cancer and normal samples. |
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| Ensembl ID | Base mean | log2FC(AD/control) | lfcSE | Stat | P-value | Adjc.p-value | DEG direction | Cancer type |
| ENSG00000235529 | 3.835105e+01 | 2.742408e+00 | 1.572206e-01 | 1.744306e+01 | 3.890000e-68 | 1.410000e-66 | UP | BRCA |
| ENSG00000235529 | 4.192157e+01 | -1.158980e+00 | 2.776724e-01 | -4.173911e+00 | 2.990000e-05 | 9.110000e-05 | DOWN | LIHC |
| Correlation between lncRNAs and cancer stages. |
| LncRNA Ensembl ID | Correlation | P-value | Cancer Type | Adjc.p-value |
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lncRNA-Protein interaction for AGAP1-IT1 |
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| lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5). |
| LncRNA Ensembl ID | LncRNA ENST ID | LncRNA Name | Protein Ensembl ID | Protein Name | CatRAPID Score | Lncpro Score | UniPortID | Gene Subtype | Public source |
| lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5). |
| LncRNA Ensembl ID | LncRNA ENST ID | LncRNA Name | Protein Ensembl ID | Protein Name | CatRAPID Score | Lncpro Score | UniPortID | Gene Subtype | Public source |
| lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5). |
| LncRNA Ensembl ID | LncRNA ENST ID | LncRNA Name | Protein Ensembl ID | Protein Name | CatRAPID Score | Lncpro Score | UniPortID | Gene Subtype | Public source |
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