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lncRNA: ENSG00000235298

Summary for RP11-575L7.8

Gene summary

Gene information	Ensembl ID	ENSG00000235298
	Gene symbol	RP11-575L7.8
	Gene name
	HGNC
	Entrez ID
	Gene type	antisense
	Synonyms
	UniProtAcc

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Structure and expression level for RP11-575L7.8

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000235298	3.024997e+01	1.304443e+00	1.405049e-01	9.283969e+00	1.630000e-20	1.010000e-19	UP	KIRC

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID

Correlation

P-value

Cancer Type

Adjc.p-value

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lncRNA-Protein interaction for RP11-575L7.8

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000235298	ENST00000448389	RP11-575L7.8	ENSG00000024048	UBR2	81.77	90.5947	Q8IWV8	Epi	NA
ENSG00000235298	ENST00000448389	RP11-575L7.8	ENSG00000171316	CHD7	74.69	92.4257	Q9P2D1	Epi	NA
ENSG00000235298	ENST00000448389	RP11-575L7.8	ENSG00000147130	ZMYM3	64.16	90.7829	Q14202	Epi	NA
ENSG00000235298	ENST00000448389	RP11-575L7.8	ENSG00000167548	KMT2D	53.55	95.1982	O14686	Epi	NA
ENSG00000235298	ENST00000448389	RP11-575L7.8	ENSG00000120616	EPC1	46.63	91.6838	Q9H2F5	Epi	NA
ENSG00000235298	ENST00000448389	RP11-575L7.8	ENSG00000177200	CHD9	68.6	93.2418	Q3L8U1	Epi	NA
ENSG00000235298	ENST00000448389	RP11-575L7.8	ENSG00000120733	KDM3B	56.73	92.1476	Q7LBC6	Epi	NA
ENSG00000235298	ENST00000448389	RP11-575L7.8	ENSG00000115524	SF3B1	53.73	94.0803	O75533	Epi	NA

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000235298	ENST00000448389	RP11-575L7.8	ENSG00000122965	RBM19	71.93	91.918	Q9Y4C8	RBP	NA
ENSG00000235298	ENST00000448389	RP11-575L7.8	ENSG00000139746	RBM26	60.7	90.4669	Q5T8P6	RBP	NA
ENSG00000235298	ENST00000448389	RP11-575L7.8	ENSG00000167978	SRRM2	20.89	96.0162	Q9UQ35	RBP	NA

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lncRNA-DNA interaction for RP11-575L7.8

lncRNA targets the enhancer region and positively regulates the gene expression.

Only predicted by TDF

RPAP2,VAMP1,PUM1,CPLANE1,ERI2,MFSD8,DNAJC27,NBPF9,SPATA13,BRD1,MZF1,TTC31,DHX38,MAPK8IP3,DCP1A,SUGP2,VAMP4,N4BP2L2,MKNK1,SLF2,L3HYPDH,ANKRD44,DMTF1,FAM193A,NSD3,UNKL,PHF10,PIGG,LMBR1L,GPCPD1,UBE4A,MUS81,ULK3,KMT2B,IRAK4,STAT2,ZFP14,CENATAC,WDR5B,SAFB2,KLHL28,MSANTD2,TUBGCP6,CCDC14,RSF1,SMARCC2,NUP58,AFF4,MYO9A,RNF38,PIAS3,CLK4,ZUP1,FAM133B,ZBED5,INPP5B,SETD2,TTC14,KNTC1,RANBP6,CREB1,SLC2A11,SPG7,EXOC8,PPIP5K2,SRSF4,SCYL3,CLCN6,ECHDC2,OGT,SCML1,C20orf194,PDE7A,CLK2,NCBP1,MYEF2,FAM219B,RNF19A,ARID4B,ASH1L,POLG2,DHX34,PTAR1,TUT4,RBM15,CHKB,METTL17,FAN1,CPSF7,BBIP1,OSGEP,THOC2,CTC1,CLK1,ZBTB6,ATXN7,MRRF,RABL2A,RPAIN,OFD1,PEAK1,FBXO38,RFX7,SLC25A29,FCHSD1,IFT172,HCFC2,FOXJ3,PURA,KDM7A,MBD5,MIER1,HGS,ANO8,RSRC2,TTC21B,NPAT,INO80E,NAPB,ANKRD11,NAA25,NEMP1,SETD5,MIS18BP1,ZFP62,GON4L,SOCS4,MDN1,C9orf72,ZBED8,ORMDL1,CHD9,BRAF,YTHDC1,TOPBP1,FKBP15,AGER,AGO3,ORC2,NFKBIZ,SRSF2,PHC3,CUL9,CDK11A,PASK,LRRC37B,ZZEF1,ABHD16A,INTS2,SUPT20H,CCDC191,NXF1,DCUN1D2,RNF111,ANKRD28,NR2C2,PAN2,FAM229A,SLC25A16,SMARCAD1,GIGYF1,KHNYN,RMI1,FAM193B,PKN2,BRD2,SEC31B,CCDC186,CDK17,NRDE2,ATG2B,ZFC3H1,ARHGAP33,MBTD1,ATXN2L,SP3,SEPSECS,ARHGEF7,DDX42,CCNT1,VCPKMT,CEP192,EIF4A1,VPS13A,POLM,GOLGA2,DNAJC24,PGGT1B,ATF7IP,ZFP3,MARCHF6,SWT1,BRD3,LTN1,HERC4,RNF214,AMMECR1L,ATM,FANCL,ILF3,TTC17,CDK13,LENG8,PER2,SH2B1,KLF7,SMURF2,PHKA2,C1orf159,TRAF6,CEP57,UBE2G2,HOOK3,IP6K2,ARIH2,SPICE1,PPWD1,RC3H2,RELCH,ARMCX4,MLLT6,ATG12,PIBF1,AHI1,ZNF70,CLASP1,INO80D,NHLRC3,ICE2,RORA,CRLF3,PHF7,DDX55,CASP2,KRIT1,AP1G2,FAM111A,THOC1,PROSER1,ANKMY1,WDR59,ZNF25,TRNT1,NUMA1,PHF12,TNK2,TNKS2,ZZZ3,DENND6A,UGGT2,ZMYM5,C2CD3,UBR4,NBEAL2,SNRNP48,RC3H1,CBLB,XPO4,SETX,ZNF44,CDK20,SLC12A6,TRIM13,SMG1,UFL1,DENND11,FGFR1OP2,PKD1,RIMKLB,LTO1,TRAF1,PHC1,RAI1,METAP1D,BCLAF3,SEMA4D,DNAJB14,PUS7L,MCM9,ALS2CL,IFT80,ZCCHC14,CEP83,NEK9,GGNBP2,EP400,UBN2,EXD3,ERCC6L2,KIAA0586,LRIG2,PARP2,ABHD18,NEMF,REV3L,NRBP2,SMCHD1,SLX4,CREBRF,MECP2,AFDN,SMYD4,IKBKB,NBPF11,AGTPBP1,AASS,ACIN1,ZNF41,ZC3H8,LATS1,SART3,ENOSF1,MAU2,RAB2B,TAOK2,ANKRD49,PAXBP1,GANC,FNBP4,KIAA1958,INPP5E,KMT2D,BOD1L1,PHF11,RSRP1,TMF1,EYA3,MLLT10,CHD2,TSTD2,RNF31,FLCN,MED23,ATG14,CLEC2D,GOLGB1,PWWP2A,NBPF15,LTB4R,METTL14,OTUD4,TUBGCP3,ZNF720,HEMK1,MIER3,LINS1,HERC1,BTBD7,ANKRD26,SCAF11,GSAP,GPBP1,C2orf68,MRE11,ZSWIM8,GK5,RBM6,EHMT1,TRMT13,ZNF862,TTBK2,TP53BP1,IDUA,CCDC82,ARID4A,NT5C2,CCDC142,ELP1,PAXIP1,SYNE2,NOM1,KIF3A,EPM2AIP1,NAA35,SYNGAP1,CHD1,MAML1,WDR27,HECTD4,EME2,KHDC4,PLXNB1,TPR,EP400P1,MIDEAS,PPP1R26,HPS4,PNISR,SFPQ,CEPT1,USP45,CARD8,DMXL2,LMLN,ATAD2B,ZNF10,GOPC,NISCH,FBXO9,FAM126B,INVS,BCL6,HECTD2,ESCO1,RALGAPA1,PBX2,TMX3,KLF12,ANGEL2,BICRA,WDR11,ATXN7L2,POC5,KDM3B,ADPGK,MYSM1,FAM214A,N4BP2,MED13L,AKAP8,ARID2,NUP214,VPS13B,UIMC1,DPY19L2,TJAP1,RNF44,MALT1,TAF1D,KATNBL1,TAF4,PLEKHH1,CEP95,SPIN3,TBRG1,TBP,GABPA,SLX4IP,PPP1R12A,KLHDC1,GATAD1,PBRM1,CCNL2,TET3,EFCAB7,PRR14L,CLK3,RNPC3,ANKRD10,RPS6KB1,TENT4A,INCA1,UBXN7,LRCH3,MNT,GABBR1,CNOT4,SON,CHTOP,DOP1A,KIAA2026,MSL3,KANSL3,KMT2C,SCAF4,PHF8,DENND4A,MC1R,TYK2,MPHOSPH9,CCNT2,OSBPL7,PTCD3,EDC4,KAT2A,NFRKB,ZNF91,CHD6,AGO2,BRWD1,RBM26,PLA2G6,PCSK7,PURB,TUBGCP5,RBM25,KIF27,FBXW7,TBCK,BBS10,KLHL9,ZFP30,MLH3,SP4,SETD6,KANSL1L,POLI,UBR5,PRPF39,ITSN2,ERMARD,KIAA0753,WDFY3,TRIM45,ENTPD4,NDOR1,SMC5,SRRM2,DCAF17,HEATR5B,BTN2A1,MIB2,WHRN,EPC1,LCOR,ZC3H13,DDHD1,PABIR2,ZNF717,MAP4K5,CMTR2,GORAB,MAP3K7,CEP44,CENPC,HSF4,RBM41,PROSER3,HERC2,ARGLU1,TDG,YJEFN3,NEPRO,LIG4,TUBGCP4,CCNL1,RGL3,USP28,PTPN23,ANKRA2,SGSM2,C2orf49,POLK,VMAC,CELF1,TMEM161B,EPG5,KRR1,RBM45,HSPBAP1,NFXL1,PRDM2,WRN,R3HDM2,PMS1,QRICH1,FAM160A2,ZGPAT,DDX31,ADCY6,WDR36,TIA1,HOOK2,RANBP10,PPP4R3A,ZNF83,MOSMO,HCN3,KANSL1,NSUN6,RFX3,ZNF8,ZMYM3,ABCD4,SYNJ1,DPH1,ERCC3,NEIL1,SZT2,POLE,FAM13B,DDX5,USP48,STX17,HELZ,ELF2,LYST,CRAMP1,LUC7L,ZNF43,WDR6,PNN,MICAL3,LUC7L2,BRD8,CCAR1,GAPVD1,UBE2V1,DGKD,CENPJ,DPH7,SNX13,POU6F1,TMEM131,TRA2A,MAPKAPK5,KMT2A,TPP2,REV1,NEURL4,PCBD2,NR2C1,AMY2B,APBB3,DYNC1LI2,SOS1,RUFY2,WBP1,JMY,TEPSIN,RBM33,ZDHHC21,NADSYN1,NOL8,WDR37,LRCH4,SRRT,AGAP6,RBM19,GGA3,HACE1,GABPB2,ATXN7L1,CPEB2,MAPKBP1,TRIM66,RBM39,ODF2L,SLC26A6,GPATCH8,SLC25A27,PGS1,MSL2,MDC1,ZCCHC8,NRF1,FAM120B,WASHC4,ZXDC,INTS3,NSRP1,PIGL,RIC3,NEK3,ZC3H7A,GBA2,CSAD,KIAA0895L,LRRC37A3,BAZ2A,ATAD3B,MAP3K2,GPATCH2,RBM28,DCAF8,IKZF5,LAMA5,ABCA5,PHYKPL,SF3B1,POFUT2,NHLRC2,ZBTB5,RUFY3,BCLAF1,ZFYVE26,OGA,PAN3,CEP350,MED28,NIPSNAP3B,KMT2E,DCAF16,GOLGA1,ZC3H4,NUMB,ACVR2B,SUPT7L,MORC3,QSOX2,RICTOR,CENPT,OSGEPL1,CYTH1,PEX1,CHORDC1,S100PBP,RBM4,RAB11FIP2,CALCOCO1,DPP8,MTG1,USP24,APAF1,SOS2,TOGARAM1,FAM76B,POGZ,BRWD3,AKAP10,RBMX,RBM4B,TSC2,EXOG,PCNT,ANAPC2,YEATS2,TAF1C,RBM14,ADNP,MAP3K12,SCAI,MBD1,IKZF4,LCAT,MYO19,JARID2,ARID1B,FUBP1,AAAS,DCAF5,PRIMPOL,UBQLN1,TRIM33,WDR20,EZH1,MRNIP,THAP6,SS18L1,ELMOD3,DHX15,DDX17,FBXW2,SENP7,CHFR,MTRF1,RSBN1L,FMR1,RAD52,HDAC7,DYRK1A,CTDSPL2,MARF1,INO80,CEP290,SDR39U1,TRPM7,SMC6,CDAN1,WSB1,GPALPP1,MKLN1,PHIP,VPS52,USP21,ALS2,ABCC5,ELK4,KLC1,TIGD1,GPS2,TRIM52,NCBP3,DEPDC5,USF3,SLC22A5,CLASRP,FBXO11,ZC3HAV1L,CCDC93,DFFB,TTC13,MBD6,CWC25,STK36,TTC32,MTX3,ZMAT1,GOLGA8B,UBAP2,MCM3AP,HP1BP3,ALPK1,TUT7,STRADA,VPS13C,ZFX,DIDO1,GOLGA8A,TEX10,CYP2R1,RABGAP1,PPHLN1,FKTN,SETD4,CREBBP,RBM48,PIKFYVE,AARSD1,DUSP28,PUM2,TYW5,RBM5,USP3,NKTR,CEP162,ZFP28,C19orf71,ZNF17,SRCAP,DOT1L,TTLL3,TUBE1,RNF169,ZNF84,BAZ2B,RXRB,CCP110,PARP6,BICRAL,WDR33,WDR26,TRA2B,PRPF40B,FRYL,PCMTD1,LRP5L,JMJD1C,KATNIP,ASXL1,TSC1,DENND4B,NSUN3,SPG11,TEP1,MAN2C1,USPL1,WHAMM,PRPF4B,CCDC57,TET2,PIP5K1A

Exist in public source

lncRNA targets the promoter region and positively regulates the gene expression.

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for RP11-575L7.8

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

CLPP,MICOS13,PARK7,TSR3,AP2S1,CFL1,MRPL37,SMIM12,UQCRC1,PSMB6,NDUFB11,NDUFB2,RHOC,PSMA7,UBA52,GSTO1,HSD17B10,RNF181

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

LncRNA Ensembl ID

LncRNA ENST ID

Exon ID

Skipped Exon

ndG

Gene name with skipped exon

TransID with skipped exon

ORF mutation

-lncRNA and exonskipping events are negatively correlated.

lncRNA and exonskipping events negative correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	LOF
ENSG00000235298	ENST00000448389	exon_skip_382458	chr3:38131595-38131638	-8.90	-0.2697	ACAA1	ENST00000333167	Frame-shift

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

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Variants for RP11-575L7.8

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID	PC Gene ID	PC Gene Name	Positive correlated cancers	Cancer with PC gene up-regulation	Cancer with PC gene down-regulation
ENSG00000235298	ENSG00000004777	ARHGAP33	ACC,GBM,KIRC,KIRP,OV,PAAD,THCA	KIRC
ENSG00000235298	ENSG00000013441	CLK1	ACC,BRCA,CESC,ESCA,GBM,KIRC,KIRP,LAML,LGG,OV,PAAD,STAD,THCA	KIRC
ENSG00000235298	ENSG00000104859	CLASRP	ACC,GBM,KIRC,KIRP,OV,PAAD,THCA	KIRC
ENSG00000235298	ENSG00000109046	WSB1	ACC,BRCA,CESC,GBM,KIRC,KIRP,LGG,OV,PAAD,THCA	KIRC
ENSG00000235298	ENSG00000113108	APBB3	ACC,BRCA,CESC,ESCA,GBM,KIRC,KIRP,LGG,OV,PAAD,STAD,THCA	KIRC
ENSG00000235298	ENSG00000113240	CLK4	ACC,BRCA,CESC,ESCA,GBM,KIRC,KIRP,LGG,OV,PAAD,STAD,THCA	KIRC
ENSG00000235298	ENSG00000117616	RSRP1	ACC,BRCA,CESC,ESCA,GBM,KIRC,KIRP,OV,PAAD,STAD,THCA	KIRC
ENSG00000235298	ENSG00000127415	IDUA	ACC,GBM,KIRC,KIRP,LGG	KIRC
ENSG00000235298	ENSG00000132522	GPS2	ACC,CESC,GBM,KIRC,KIRP,LGG,PAAD,THCA	KIRC
ENSG00000235298	ENSG00000138834	MAPK8IP3	ACC,CESC,ESCA,KIRC,KIRP,OV,PAAD,STAD,THCA	KIRC
ENSG00000235298	ENSG00000139631	CSAD	ACC,BRCA,CESC,GBM,KIRC,KIRP,LGG,OV,PAAD,STAD,THCA	KIRC
ENSG00000235298	ENSG00000161010	MRNIP	ACC,BRCA,CESC,ESCA,GBM,KIRC,KIRP,LGG,OV,PAAD,STAD,THCA	KIRC
ENSG00000235298	ENSG00000167615	LENG8	ACC,BRCA,CESC,ESCA,GBM,KIRC,KIRP,LGG,OV,PAAD,STAD,THCA	KIRC
ENSG00000235298	ENSG00000169592	INO80E	ACC,KIRC,KIRP,PAAD,THCA	KIRC
ENSG00000235298	ENSG00000172890	NADSYN1	ACC,GBM,KIRC,LGG,OV,PAAD	KIRC
ENSG00000235298	ENSG00000175309	PHYKPL	ACC,BRCA,CESC,ESCA,KIRC,KIRP,LGG,OV,PAAD,STAD,THCA	KIRC
ENSG00000235298	ENSG00000175455	CCDC14	ACC,BRCA,CESC,ESCA,GBM,KIRC,KIRP,LGG,OV,PAAD,STAD,THCA	KIRC
ENSG00000235298	ENSG00000185158	LRRC37B	ACC,ESCA,GBM,KIRC,KIRP,LGG,STAD,THCA	KIRC
ENSG00000235298	ENSG00000185189	NRBP2	ACC,GBM,KIRC,KIRP,LGG,OV,PAAD,THCA	KIRC
ENSG00000235298	ENSG00000197774	EME2	ACC,CESC,GBM,KIRC,KIRP,LGG,OV,PAAD,STAD,THCA	KIRC
ENSG00000235298	ENSG00000204149	AGAP6	ACC,BRCA,CESC,ESCA,GBM,KIRC,KIRP,LGG,OV,PAAD,STAD,THCA	KIRC
ENSG00000235298	ENSG00000204681	GABBR1	ACC,BRCA,ESCA,KIRC,KIRP,PAAD,STAD,THCA	KIRC
ENSG00000235298	ENSG00000214021	TTLL3	ACC,BRCA,ESCA,GBM,KIRC,KIRP,LGG,OV,PAAD,STAD,THCA	KIRC
ENSG00000235298	ENSG00000215252	GOLGA8B	ACC,BRCA,ESCA,GBM,KIRC,KIRP,LGG,OV,PAAD,STAD,THCA	KIRC
ENSG00000235298	ENSG00000240038	AMY2B	ACC,GBM,KIRC,KIRP,OV,THCA	KIRC
ENSG00000235298	ENSG00000069493	CLEC2D	BRCA,GBM,KIRC,KIRP,OV,PAAD,STAD	KIRC
ENSG00000235298	ENSG00000077044	DGKD	BRCA,GBM,KIRC,KIRP,LGG,PAAD	KIRC
ENSG00000235298	ENSG00000139625	MAP3K12	BRCA,ESCA,GBM,KIRC,KIRP,LGG,OV,THCA	KIRC
ENSG00000235298	ENSG00000146858	ZC3HAV1L	BRCA,CESC,KIRC,KIRP,OV,PAAD,THCA	KIRC
ENSG00000235298	ENSG00000161960	EIF4A1	BRCA,CESC,ESCA,GBM,KIRC,KIRP,LGG,OV,PAAD,STAD	KIRC
ENSG00000235298	ENSG00000184465	WDR27	BRCA,CESC,ESCA,GBM,KIRC,KIRP,LGG,OV,PAAD,STAD,THCA	KIRC
ENSG00000235298	ENSG00000186088	GSAP	BRCA,KIRC,KIRP,OV,PAAD,STAD,THCA	KIRC
ENSG00000235298	ENSG00000186166	CENATAC	BRCA,GBM,KIRC,KIRP,OV,PAAD,STAD,THCA	KIRC
ENSG00000235298	ENSG00000221978	CCNL2	BRCA,CESC,ESCA,GBM,KIRC,KIRP,OV,PAAD,STAD,THCA	KIRC
ENSG00000235298	ENSG00000250067	YJEFN3	BRCA,CESC,GBM,KIRC,KIRP,OV,PAAD	KIRC
ENSG00000235298	ENSG00000266338	NBPF15	BRCA,CESC,ESCA,GBM,KIRC,KIRP,LGG,PAAD,STAD,THCA	KIRC
ENSG00000235298	ENSG00000135637	CCDC142	CESC,GBM,KIRC,KIRP,LGG,OV,PAAD	KIRC
ENSG00000235298	ENSG00000184445	KNTC1	CESC,GBM,KIRC,KIRP,PAAD,STAD	KIRC
ENSG00000235298	ENSG00000196123	KIAA0895L	CESC,ESCA,GBM,KIRC,KIRP,LGG,OV,PAAD,STAD,THCA	KIRC
ENSG00000235298	ENSG00000256525	POLG2	CESC,GBM,KIRC,KIRP,LGG,OV,PAAD,STAD,THCA	KIRC
ENSG00000235298	ENSG00000061938	TNK2	ESCA,GBM,KIRC,LGG,OV	KIRC
ENSG00000235298	ENSG00000100288	CHKB	ESCA,GBM,KIRC,PAAD,STAD	KIRC
ENSG00000235298	ENSG00000175265	GOLGA8A	ESCA,GBM,KIRC,KIRP,LGG,OV,PAAD,THCA	KIRC
ENSG00000235298	ENSG00000044446	PHKA2	GBM,KIRC,KIRP,PAAD,THCA	KIRC
ENSG00000235298	ENSG00000072609	CHFR	GBM,KIRC,KIRP,PAAD,THCA	KIRC
ENSG00000235298	ENSG00000108773	KAT2A	GBM,KIRC,KIRP,LGG,OV,THCA	KIRC
ENSG00000235298	ENSG00000139636	LMBR1L	GBM,KIRC,KIRP,LGG,OV,PAAD,THCA	KIRC
ENSG00000235298	ENSG00000160072	ATAD3B	GBM,KIRC,KIRP,OV,THCA	KIRC
ENSG00000235298	ENSG00000163872	YEATS2	GBM,KIRC,LGG,OV,PAAD	KIRC
ENSG00000235298	ENSG00000204305	AGER	GBM,KIRC,KIRP,PAAD,STAD	KIRC
ENSG00000235298	ENSG00000213903	LTB4R	GBM,KIRC,KIRP,OV,PAAD,THCA	KIRC
ENSG00000235298	ENSG00000132326	PER2	KIRC,KIRP,LGG,OV,PAAD,THCA	KIRC
ENSG00000235298	ENSG00000166012	TAF1D	KIRC,KIRP,PAAD,STAD,THCA	KIRC
ENSG00000235298	ENSG00000197948	FCHSD1	KIRC,KIRP,PAAD,STAD,THCA	KIRC
ENSG00000235298	ENSG00000205268	PDE7A	KIRC,LGG,PAAD,STAD,THCA	KIRC
ENSG00000235298	ENSG00000213398	LCAT	KIRC,KIRP,OV,PAAD,THCA	KIRC

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID

LncRNA ENST ID

PC Gene Name

PC Gene ID

PC ENST ID

nDG

Cancer with PC gene up-regulation

Cancer with PC gene Down-regulation

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000235298.1	ENST00000448389.1	86	384	124

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential