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lncRNA: ENSG00000234678

Summary for ELF3-AS1

Gene summary

Gene information	Ensembl ID	ENSG00000234678
	Gene symbol	ELF3-AS1
	Gene name	ELF3 antisense RNA 1
	HGNC	40211
	Entrez ID
	Gene type	antisense
	Synonyms	01q32.1\|ELF3-AS1\|RP11-465N4.4
	UniProtAcc

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Structure and expression level for ELF3-AS1

Differentially expressed gene analysis between cancer and normal samples.

Ensembl ID	Base mean	log2FC(AD/control)	lfcSE	Stat	P-value	Adjc.p-value	DEG direction	Cancer type
ENSG00000234678	8.306178e+01	1.182233e+00	3.166648e-01	3.733389e+00	1.889210e-04	7.771760e-04	UP	CHOL
ENSG00000234678	1.121910e+02	1.440354e+00	2.957106e-01	4.870824e+00	1.110000e-06	9.780000e-06	UP	BLCA
ENSG00000234678	1.343721e+02	2.003566e+00	6.152940e-01	3.256274e+00	1.128846e-03	8.721681e-03	UP	CESC
ENSG00000234678	6.686111e+01	2.404193e+00	1.652432e-01	1.454942e+01	5.890000e-48	5.640000e-46	UP	UCEC
ENSG00000234678	7.705358e+01	1.176680e+00	1.157164e-01	1.016866e+01	2.740000e-24	1.220000e-22	UP	PRAD
ENSG00000234678	1.166858e+02	1.328375e+00	1.344660e-01	9.878893e+00	5.140000e-23	3.910000e-22	UP	LUSC
ENSG00000234678	9.146102e+01	1.352587e+00	8.673933e-02	1.559370e+01	8.030000e-55	1.990000e-53	UP	BRCA
ENSG00000234678	1.139916e+02	1.726562e+00	1.219924e-01	1.415303e+01	1.790000e-45	8.070000e-44	UP	LUAD
ENSG00000234678	1.017599e+02	1.710030e+00	1.895918e-01	9.019533e+00	1.890000e-19	3.430000e-18	UP	LIHC

Correlation between lncRNAs and cancer stages.

LncRNA Ensembl ID	Correlation	P-value	Cancer Type	Adjc.p-value
ENSG00000234678	6.364019e-01	2.616578e-06	CHOL	3.284392e-05
ENSG00000234678	3.736457e-01	1.064327e-14	LIHC	1.135964e-13
ENSG00000234678	3.667558e-01	5.509392e-19	PRAD	1.060828e-17
ENSG00000234678	3.738129e-01	6.619937e-21	UCEC	4.573774e-19

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lncRNA-Protein interaction for ELF3-AS1

lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID

LncRNA ENST ID

LncRNA Name

Protein Ensembl ID

Protein Name

CatRAPID Score

Lncpro Score

UniPortID

Gene Subtype

Public source

lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5).

LncRNA Ensembl ID	LncRNA ENST ID	LncRNA Name	Protein Ensembl ID	Protein Name	CatRAPID Score	Lncpro Score	UniPortID	Gene Subtype	Public source
ENSG00000234678	ENST00000415582	RP11-465N4.4	ENSG00000134815	DHX34	33.5	91.1494	Q14147	RBP	NA

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lncRNA-DNA interaction for ELF3-AS1

lncRNA targets the enhancer region and positively regulates the gene expression.

lncRNA targets the promoter region and positively regulates the gene expression.

lncRNA targets the promoter region and negatively regulates the gene expression.

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lncRNA-RNA interaction for ELF3-AS1

lncRNA targets the 3'UTR region and negatively regulates the mRNA.

Only predicted by lncTar

FRMD6,CELF2,QKI,ABCA8,MAP3K3,IL6ST,TNS1,C1R,MSRB3,FERMT2,ACTN1,KANK2,GAS7,GNAI2,ZCCHC24,KIRREL1,A2M,MPDZ,JAM2,TUBB6,SLC12A4

Exist in public source

lncRNA targets the skipped exon region.

-lncRNA and exonskipping events are positively correlated.

lncRNA and exonskipping events positive correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	ORF mutation
ENSG00000234678	ENST00000415582	exon_skip_44853	chr10:104010815-104010908	-9.45	-0.1500	SLK	ENST00000369755	In-frame
ENSG00000234678	ENST00000415582	exon_skip_44998	chr10:110132304-110132400	-8.62	-0.1002	ADD3	ENST00000356080	In-frame
ENSG00000234678	ENST00000415582	exon_skip_48713	chr10:34336198-34336243	-8.67	-0.2709	PARD3	ENST00000374789	In-frame
ENSG00000234678	ENST00000415582	exon_skip_64939	chr11:112230207-112230230	-5.20	-0.3714	PTS	ENST00000280362	Frame-shift
ENSG00000234678	ENST00000415582	exon_skip_98384	chr12:124327408-124327633	-22.66	-0.1074	NCOR2	ENST00000405201	In-frame
ENSG00000234678	ENST00000415582	exon_skip_114200	chr14:73279280-73279424	-13.97	-0.1027	NUMB	ENST00000355058,ENST00000555238	In-frame
ENSG00000234678	ENST00000415582	exon_skip_378912	chr3:152446703-152446757	-6.54	-0.1924	MBNL1	ENST00000282486,ENST00000463374	In-frame
ENSG00000234678	ENST00000415582	exon_skip_386291	chr3:108050577-108050602	-7.67	-0.6973	CD47	ENST00000361309	Frame-shift
ENSG00000234678	ENST00000415582	exon_skip_423795	chr4:55888887-55888932	-7.01	-0.2261	EXOC1	ENST00000346134,ENST00000381295	In-frame
ENSG00000234678	ENST00000419190	exon_skip_435063	chr5:66075023-66075230	-19.01	-0.1284	ERBIN	ENST00000284037	In-frame
ENSG00000234678	ENST00000415582	exon_skip_456460	chr6:17771113-17771218	-11.99	-0.1164	KIF13A	ENST00000259711	In-frame
ENSG00000234678	ENST00000415582	exon_skip_461111	chr6:90544551-90544632	-13.60	-0.1789	MAP3K7	ENST00000369329	In-frame
ENSG00000234678	ENST00000415582	exon_skip_499771	chr9:128592982-128593042	-9.25	-0.1927	SPTAN1	ENST00000372731	In-frame
ENSG00000234678	ENST00000415582	exon_skip_150188	chr17:27643524-27643620	-11.77	-0.1706	LGALS9	ENST00000395473	In-frame

-lncRNA and exonskipping events are negatively correlated.

lncRNA and exonskipping events negative correlated

LncRNA Ensembl ID	LncRNA ENST ID	Exon ID	Skipped Exon	dG	ndG	Gene name with skipped exon	TransID with skipped exon	LOF
ENSG00000234678	ENST00000415582	exon_skip_21610	chr1:9737497-9737554	-7.47	-0.2075	CLSTN1	ENST00000377298	In-frame
ENSG00000234678	ENST00000415582	exon_skip_33516	chr1:156938417-156938513	-12.71	-0.1412	ARHGEF11	ENST00000361409	In-frame
ENSG00000234678	ENST00000415582	exon_skip_43507	chr10:84499874-84499959	-10.76	-0.2196	CCSER2	ENST00000224756	Frame-shift
ENSG00000234678	ENST00000415582	exon_skip_52231	chr10:93392916-93392955	-6.00	-0.2069	MYOF	ENST00000359263	In-frame
ENSG00000234678	ENST00000415582	exon_skip_287874	chr17:29085603-29085648	-4.32	-0.1271	MYO18A	ENST00000527372	In-frame
ENSG00000234678	ENST00000415582	exon_skip_326917	chr2:74532618-74532714	-10.63	-0.1155	HTRA2	ENST00000258080	In-frame
ENSG00000234678	ENST00000415582	exon_skip_361434	chr21:25997359-25997416	-12.79	-0.2907	APP	ENST00000346798	In-frame
ENSG00000234678	ENST00000415582	exon_skip_376144	chr3:100311832-100311877	-5.23	-0.1162	TBC1D23	ENST00000394144	In-frame
ENSG00000234678	ENST00000415582	exon_skip_382356	chr3:37091466-37091538	-7.13	-1.0186	LRRFIP2	ENST00000336686	In-frame
ENSG00000234678	ENST00000415582	exon_skip_436488	chr5:96726793-96726859	-9.47	-0.1435	CAST	ENST00000341926,ENST00000395813	In-frame
ENSG00000234678	ENST00000415582	exon_skip_451515	chr6:41080810-41080897	-12.63	-0.2070	NFYA	ENST00000341376	In-frame
ENSG00000234678	ENST00000415582	exon_skip_337919	chr2:27445744-27445843	-9.87	-0.1352	IFT172	ENST00000260570	In-frame

lncRNA targets by miRNA.

LncRNA Ensembl ID

miRNA ID

LncRNA ENST ID

Binding site in lncRNA

Score

Energy

Align Len

Public source

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Variants for ELF3-AS1

RNA A-to-I editing events in lncRNA.

LncRNAediting ID

LncRNA Ensembl ID

Chromosome

Editing Position

Strand

Gene Type

Gene Name

Transcript ID

Transcript Type

Transcript Name

Edited-associated DElncRNAs in cancer.

LncRNA Ensembl ID

LncRNA Index

Cancer Type

Chr_Postion_Strand

AVE1

AVE2

log2FC

W-value

P-value

Adjc.p-value

Change

Correlation between RNA A-to-I editing events's frequecy and lncRNA expression.

LncRNA Ensembl ID

LncRNA Index

Correlation

P-value

Adjc.p-value

Cis-expression quantitative trait loci(cis-eQTL) of lncRNA.

LncRNA Ensembl ID

LncRNA Name

SNP info

Number of Positive corelated Cancer

Positive corelated Cancer

Number of Negative corelated Cancer

Negative corelated Cancer

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lncRNAs regulate the target genes through functioning as enhancers

lncRNA regulates differentially expressed genes by function as enhancer.

LncRNA Ensembl ID

PC Gene ID

PC Gene Name

Positive correlated cancers

Cancer with PC gene up-regulation

Cancer with PC gene down-regulation

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lncRNAs regulate the target genes through recruiting transcript factors

LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5).

lncRNA ID

TF ID

TF Name

PCgene ID

PCgene Name

Number of Cancer

Canaer Types

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lncRNAs regulate the alternative splicing event through interacting with splicing factor

LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region.

LncRNA Ensembl ID

RBP ID

RBP Gene Name

Exon Skipping ID

Skipped Exon

EX Gene Name

EX Affected TransID

ORF_anno

Cancer Type

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lncRNAs regulate mRNA through targeting the 3'-UTR region

lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region.

LncRNA Ensembl ID	LncRNA ENST ID	PC Gene Name	PC Gene ID	PC ENST ID	dG	nDG	Cancer with PC gene up-regulation	Cancer with PC gene Down-regulation
ENSG00000234678	ENST00000419190	ACTN1	ENSG00000072110	ENST00000438964	-0.2744	1	-	BLCA,UCEC
ENSG00000234678	ENST00000419190	ACTN1	ENSG00000072110	ENST00000376839	-0.2783	9	-	BLCA,UCEC
ENSG00000234678	ENST00000419190	ACTN1	ENSG00000072110	ENST00000555075	-0.2353	12	-	BLCA,UCEC
ENSG00000234678	ENST00000419190	FRMD6	ENSG00000139926	ENST00000555197	-0.1766	134	-	UCEC,PRAD,LIHC
ENSG00000234678	ENST00000419190	TUBB6	ENSG00000176014	ENST00000590388	-0.1562	1	-	BLCA,UCEC,BRCA,LUAD
ENSG00000234678	ENST00000419190	TUBB6	ENSG00000176014	ENST00000592683	-0.1684	429	-	BLCA,UCEC,BRCA,LUAD
ENSG00000234678	ENST00000419190	TUBB6	ENSG00000176014	ENST00000590967	-0.2637	6	-	BLCA,UCEC,BRCA,LUAD
ENSG00000234678	ENST00000419190	TUBB6	ENSG00000176014	ENST00000586691	-0.1025	256	-	BLCA,UCEC,BRCA,LUAD
ENSG00000234678	ENST00000419190	ZCCHC24	ENSG00000165424	ENST00000372333	-0.1614	1	-	CHOL,BLCA,CESC,UCEC,LUSC,BRCA,LUAD,LIHC
ENSG00000234678	ENST00000419190	MSRB3	ENSG00000174099	ENST00000541897	-0.1204	68	-	BLCA,CESC,UCEC,PRAD,LUSC,BRCA,LUAD
ENSG00000234678	ENST00000419190	MSRB3	ENSG00000174099	ENST00000535664	-0.1098	200	-	BLCA,CESC,UCEC,PRAD,LUSC,BRCA,LUAD
ENSG00000234678	ENST00000419190	MSRB3	ENSG00000174099	ENST00000446731	-0.1456	520	-	BLCA,CESC,UCEC,PRAD,LUSC,BRCA,LUAD
ENSG00000234678	ENST00000419190	KANK2	ENSG00000197256	ENST00000589894	-0.1238	18	-	BLCA,CESC,UCEC,PRAD,LUSC,BRCA,LUAD
ENSG00000234678	ENST00000419190	C1R	ENSG00000159403	ENST00000536053	-0.1348	117	-	CHOL,BLCA,UCEC,LIHC
ENSG00000234678	ENST00000419190	C1R	ENSG00000159403	ENST00000535233	-0.1348	117	-	CHOL,BLCA,UCEC,LIHC
ENSG00000234678	ENST00000419190	FERMT2	ENSG00000073712	ENST00000399304	-0.1551	453	-	CHOL,BLCA,CESC,UCEC,PRAD,LUSC,BRCA,LUAD,LIHC
ENSG00000234678	ENST00000419190	FERMT2	ENSG00000073712	ENST00000557562	-0.1633	1	-	CHOL,BLCA,CESC,UCEC,PRAD,LUSC,BRCA,LUAD,LIHC
ENSG00000234678	ENST00000419190	MPDZ	ENSG00000107186	ENST00000536827	-0.1410	55	-	CHOL,BLCA,UCEC,LUSC,BRCA,LIHC
ENSG00000234678	ENST00000419190	MPDZ	ENSG00000107186	ENST00000447879	-0.1476	473	-	CHOL,BLCA,UCEC,LUSC,BRCA,LIHC
ENSG00000234678	ENST00000419190	MPDZ	ENSG00000107186	ENST00000546205	-0.4336	672	-	CHOL,BLCA,UCEC,LUSC,BRCA,LIHC
ENSG00000234678	ENST00000419190	ABCA8	ENSG00000141338	ENST00000586539	-0.3815	65	-	CHOL,BRCA,LUAD,LIHC
ENSG00000234678	ENST00000419190	A2M	ENSG00000175899	ENST00000318602	-0.1584	358	-	CHOL,BLCA,CESC,UCEC,LUSC,BRCA,LUAD,LIHC
ENSG00000234678	ENST00000419190	GNAI2	ENSG00000114353	ENST00000422163	-0.1070	1	-	CESC,LUSC
ENSG00000234678	ENST00000419190	GNAI2	ENSG00000114353	ENST00000266027	-0.1070	1	-	CESC,LUSC
ENSG00000234678	ENST00000419190	GNAI2	ENSG00000114353	ENST00000313601	-0.1070	1	-	CESC,LUSC
ENSG00000234678	ENST00000419190	SLC12A4	ENSG00000124067	ENST00000572037	-0.1475	1	-	UCEC,LUSC,LUAD
ENSG00000234678	ENST00000419190	SLC12A4	ENSG00000124067	ENST00000541864	-0.1475	1	-	UCEC,LUSC,LUAD
ENSG00000234678	ENST00000419190	SLC12A4	ENSG00000124067	ENST00000576616	-0.1022	1	-	UCEC,LUSC,LUAD
ENSG00000234678	ENST00000419190	SLC12A4	ENSG00000124067	ENST00000537830	-0.1387	67	-	UCEC,LUSC,LUAD
ENSG00000234678	ENST00000419190	SLC12A4	ENSG00000124067	ENST00000570616	-0.1168	11	-	UCEC,LUSC,LUAD
ENSG00000234678	ENST00000419190	GAS7	ENSG00000007237	ENST00000583882	-0.1606	44	-	BLCA,CESC,UCEC,LUSC,BRCA,LUAD
ENSG00000234678	ENST00000419190	GAS7	ENSG00000007237	ENST00000542249	-0.1197	1	-	BLCA,CESC,UCEC,LUSC,BRCA,LUAD
ENSG00000234678	ENST00000419190	GAS7	ENSG00000007237	ENST00000396115	-0.2442	1	-	BLCA,CESC,UCEC,LUSC,BRCA,LUAD
ENSG00000234678	ENST00000419190	GAS7	ENSG00000007237	ENST00000579158	-0.2442	1	-	BLCA,CESC,UCEC,LUSC,BRCA,LUAD
ENSG00000234678	ENST00000419190	TNS1	ENSG00000079308	ENST00000453356	-0.1334	381	-	BLCA,CESC,UCEC,PRAD,LUSC,BRCA,LUAD
ENSG00000234678	ENST00000419190	MAP3K3	ENSG00000198909	ENST00000584573	-0.1869	57	-	CESC,UCEC,LUSC,LUAD
ENSG00000234678	ENST00000415582	ACTN1	ENSG00000072110	ENST00000193403	-0.1060	316	-	BLCA,UCEC
ENSG00000234678	ENST00000415582	ACTN1	ENSG00000072110	ENST00000394419	-0.1060	316	-	BLCA,UCEC
ENSG00000234678	ENST00000415582	ACTN1	ENSG00000072110	ENST00000438964	-0.1060	316	-	BLCA,UCEC
ENSG00000234678	ENST00000415582	ACTN1	ENSG00000072110	ENST00000376839	-0.1793	1	-	BLCA,UCEC
ENSG00000234678	ENST00000415582	ACTN1	ENSG00000072110	ENST00000555075	-0.1793	1	-	BLCA,UCEC
ENSG00000234678	ENST00000415582	FRMD6	ENSG00000139926	ENST00000557405	-0.3059	1	-	UCEC,PRAD,LIHC
ENSG00000234678	ENST00000415582	FRMD6	ENSG00000139926	ENST00000555197	-0.1588	203	-	UCEC,PRAD,LIHC
ENSG00000234678	ENST00000415582	TUBB6	ENSG00000176014	ENST00000590388	-0.1399	275	-	BLCA,UCEC,BRCA,LUAD
ENSG00000234678	ENST00000415582	TUBB6	ENSG00000176014	ENST00000586653	-0.1048	204	-	BLCA,UCEC,BRCA,LUAD
ENSG00000234678	ENST00000415582	TUBB6	ENSG00000176014	ENST00000592683	-0.1405	347	-	BLCA,UCEC,BRCA,LUAD
ENSG00000234678	ENST00000415582	TUBB6	ENSG00000176014	ENST00000590967	-0.1591	286	-	BLCA,UCEC,BRCA,LUAD
ENSG00000234678	ENST00000415582	JAM2	ENSG00000154721	ENST00000400532	-0.1232	1	-	BLCA,UCEC,LUSC,BRCA,LUAD
ENSG00000234678	ENST00000415582	ZCCHC24	ENSG00000165424	ENST00000372333	-0.1712	379	-	CHOL,BLCA,CESC,UCEC,LUSC,BRCA,LUAD,LIHC
ENSG00000234678	ENST00000415582	MSRB3	ENSG00000174099	ENST00000535664	-0.6540	223	-	BLCA,CESC,UCEC,PRAD,LUSC,BRCA,LUAD
ENSG00000234678	ENST00000415582	KANK2	ENSG00000197256	ENST00000589894	-0.1810	381	-	BLCA,CESC,UCEC,PRAD,LUSC,BRCA,LUAD
ENSG00000234678	ENST00000415582	MPDZ	ENSG00000107186	ENST00000536827	-0.1338	15	-	CHOL,BLCA,UCEC,LUSC,BRCA,LIHC
ENSG00000234678	ENST00000415582	MPDZ	ENSG00000107186	ENST00000447879	-0.2000	298	-	CHOL,BLCA,UCEC,LUSC,BRCA,LIHC
ENSG00000234678	ENST00000415582	MPDZ	ENSG00000107186	ENST00000546205	-0.4336	391	-	CHOL,BLCA,UCEC,LUSC,BRCA,LIHC
ENSG00000234678	ENST00000415582	ABCA8	ENSG00000141338	ENST00000586539	-0.2665	432	-	CHOL,BRCA,LUAD,LIHC
ENSG00000234678	ENST00000415582	A2M	ENSG00000175899	ENST00000318602	-0.1038	218	-	CHOL,BLCA,CESC,UCEC,LUSC,BRCA,LUAD,LIHC
ENSG00000234678	ENST00000415582	GAS7	ENSG00000007237	ENST00000542249	-0.1105	1	-	BLCA,CESC,UCEC,LUSC,BRCA,LUAD
ENSG00000234678	ENST00000415582	GAS7	ENSG00000007237	ENST00000579158	-0.1416	329	-	BLCA,CESC,UCEC,LUSC,BRCA,LUAD
ENSG00000234678	ENST00000415582	TNS1	ENSG00000079308	ENST00000453356	-0.1310	305	-	BLCA,CESC,UCEC,PRAD,LUSC,BRCA,LUAD
ENSG00000234678	ENST00000415582	MAP3K3	ENSG00000198909	ENST00000584573	-0.1165	264	-	CESC,UCEC,LUSC,LUAD
ENSG00000234678	ENST00000419190	MAP3K3	ENSG00000198909	ENST00000577395	-0.2123	271	-	CESC,UCEC,LUSC,LUAD
ENSG00000234678	ENST00000419190	IL6ST	ENSG00000134352	ENST00000502326	-0.2983	573	-	CHOL,BLCA,CESC,UCEC,LUSC,LIHC
ENSG00000234678	ENST00000415582	MAP3K3	ENSG00000198909	ENST00000577395	-0.1418	350	-	CESC,UCEC,LUSC,LUAD
ENSG00000234678	ENST00000415582	IL6ST	ENSG00000134352	ENST00000502326	-0.2983	292	-	CHOL,BLCA,CESC,UCEC,LUSC,LIHC

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lncRNAs regulate mRNA by competing with miRNA

lncRNA regulates mRNA by competing the miRNA binding site with mRNA.

LncRNA Ensembl ID

lncRNA-miRNA-mRNA

Cancer Types

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lncRNA coding potential

ORFfinder result for the gencode.v22.lncRNA.transcript.fa.

lncRNA Ensembl ID	lncRNA ENST ID	length(AA)	start at transcript	end at transcript
ENSG00000234678.1	ENST00000419190.1	74	401	177
ENSG00000234678.1	ENST00000415582.1	98	277	573

	lncRNA summary
	lncRNA structure and expression level
	lncRNA-Protein interaction
	lncRNA-DNA interaction
	lncRNA-RNA interaction
	Variants in lncRNA
	lncRNAs regulate the target genes through functioning as enhancers
	lncRNAs regulate the target genes through recruiting transcript factors
	lncRNAs regulate the alternative splicing events through interacting with splicing factor
	lncRNAs regulate mRNA through targeting the 3'-UTR region
	lncRNAs regulate mRNA by competing with miRNA
	lncRNA coding potential