 lncRNA targets the enhancer region and positively regulates the gene expression. |
| Only predicted by TDF | | MAD2L2,ARL16,UXT,SLIRP,PRPSAP2,MRM2,KRT10,IFT22,C12orf57,MCM7,POLD2,PSMB7,PET100,CMC2,ATP5MG,WDR83OS,SHARPIN,DPM2,SRP19,TMUB1,PPP2R3B,HINT2,CTU1,CACYBP,RPS27A,MDH2,MRPL46,TIMM17B,B3GAT3,MRPS12,NDUFB9,NDUFA11,CDCA5,RCE1,RPL26L1,METTL5,ENY2,SNRPA,SMUG1,WDR54,DTYMK,APTX,CCNQ,FAAP20,COMMD7,COA3,UBE2T,SURF2,EIF3G,EBNA1BP2,NDUFA3,PPIH,INPP5K,RECQL4,COA4,RRP36,KNSTRN,CDK2AP2,SVBP,SPRN,MICOS13,SUGP1,GINS2,FAM104B,NDUFB2,MRPL13,UQCR11,RNF167,PSMD13,GTF2H5,USE1,GLRX5,TIMM23,BNIP1,TMEM208,RAB4B,ERAL1,TARBP2,ILKAP,VKORC1,LYRM4,CISD3,MPLKIP,PRCC,PSENEN,SSU72,CHKB,UROD,WDR83,USF1,ITGB3BP,ANKRD39,MPST,RPAIN,HSPE1,MRPS11,BABAM1,ACYP1,MRPS34,MRPL14,ENO3,TOMM40,TPI1,PIH1D1,CTU2,PSMA5,CDKN2AIPNL,COPS3,GAR1,MIS12,DERL2,TSSC4,B3GALT6,DDX49,C19orf48,PFDN6,MFSD3,RBM42,ATP5MK,CFL1,CSNK2B,FUOM,NOC4L,TMEM101,RUVBL1,ALKBH2,MEA1,RPL35,CENPA,NDUFA2,BORCS6,MIIP,TMEM160,PARL,RPP38,FDX2,C18orf21,LYAR,C12orf73,PSMB3,SRSF2,C1orf52,MTLN,MRPS2,GCAT,TSEN54,FAM229B,ZNF593,UBE2C,ATG4B,CENPM,MRPL57,KIF9,C2orf76,BORCS8,PFDN5,CCS,COX6C,SGTA,CCDC167,HMGN3,SLC25A39,NDUFB1,CENPH,PNKP,CZIB,ACOT8,PDRG1,HDDC2,ELOF1,DCUN1D5,RPA3,HEXD,COA6,SDHAF2,TUFM,PRELID1,RPL23A,IDH3B,PMVK,ANAPC11,MRPS25,GABARAP,RRP7A,CCDC12,EIF3K,PTRHD1,THOC7,MRPL37,CDK5,COX7A2,DDT,MCRIP1,SDF2L1,CYB561D2,CDCA3,POC1A,TRIR,SKA2,JMJD4,MRPL52,SCNM1,PRADC1,MMAB,RTRAF,SLC27A5,NDUFB3,TEDC2,PES1,GLI4,MRPL55,EMG1,CCDC28B,NMRAL1,NDUFB8,SSR4,COX6B1,JMJD6,SNRNP25,NDUFS8,DDX56,PRR3,NFU1,COX5A,PPOX,BOP1,SWI5,NDUFB11,YWHAE,MALSU1,YIF1A,RPL23,ATP6V0B,C19orf53,INO80C,PHF23,TAX1BP3,PSMB2,MRPL20,COX16,CDC20,EIF2B4,MRPL28,HSCB,ADPRM,RPL22L1,MRPS28,ARFGAP1,UCHL3,MIX23,HPF1,PFDN2,RPL13A,ACYP2,FAM136A,RPL37A,LSM3,CCDC59,SURF1,NUBP2,PTGES2,DNAJC8,LCMT1,C6orf52,INTS11,HMGN2,FIS1,CTDNEP1,BRI3,GTPBP6,IMP4,MRPL24,DUS2,MZT1,STYXL1,PUF60,RPA2,SMPD2,UBL7,PSMC3,CHCHD2,NAA38,FEN1,POLR3K,NME4,JTB,TBL3,TBCA,TMEM251,DNAJB11,CWC15,CCDC106,CCDC137,CPSF4,RFC4,NAA10,MED27,NELFE,METTL23,PCED1A,MAF1,STX8,NHP2,TUSC2,C11orf98,ELP5,TBCB,PGP,CHMP2A,BRMS1,MRPS15,MYDGF,PFN1,METTL16,THOC6,DNAJC19,PQBP1,PTTG1,LENG1,COA1,MRPS23,ATF4,PRMT7,UQCRFS1,TOMM22,IFI27L2,REXO4,PTRH2,NXT1,MBD3,POLR2L,SERF2,RPS10,VPS28,COMMD1,TRPT1,EBP,MRPL36,VPS4A,DAD1,MRPS9,NUDT22,MED19,HEMK1,CD2BP2,IFT20,PTOV1,ALKBH4,DMAC1,PYURF,HAUS1,NDUFA12,GSTO1,NDUFAF5,C2orf68,SPC24,AP4M1,HMBS,FRG1,KRTCAP2,KHDC1,TRIM28,TRIAP1,NPM3,TMEM134,POP5,PPM1G,CCT7,SYF2,TMEM91,SPC25,NTHL1,SOD1,CUEDC2,MKKS,METTL26,SCAND1,COX14,PPP1R14B,RBM8A,NDUFA6,UBXN11,HSPBP1,PHF5A,PTCD1,NDUFAF2,B9D1,DTNBP1,PPCDC,ISOC2,FARS2,S100A13,PDCD2L,NCAPH2,ATPAF2,AKR7A2,RP9,COPRS,RALY,RAB5IF,JOSD2,SNRNP40,CCDC51,SPAG7,SRA1,NOSIP,MVD,ENKD1,RFC2,ATP5IF1,BLOC1S1,TAF11,DUT,MORN2,STMN1,NDUFS6,PYM1,NUDT1,ATP5F1E,AP2S1,PSRC1,ZBTB8OS,NUDC,RASSF1,TRMU,CCDC107,MRPL34,TACC3,NFKBIB,PSMA2,SEM1,STMP1,ARF5,CHTF18,JPT1,NDUFV1,CDPF1,MRPL47,UBE2J2,NAT14,DNPH1,C1orf35,LSM10,TIMM13,MTIF3,C7orf26,BUD23,PSMG1,NPRL2,MRPL2,COQ3,CCDC85B,GFER,UQCRB,TIMM9,CHTOP,MIEN1,LSM5,SGSM3,UQCRH,TP53I13,SEC61B,B4GALT7,COQ4,COPS9,ZMAT5,STX10,FIBP,LLPH,C1QBP,ECI1,RPL39L,ARMC5,PMF1-BGLAP,SNU13,TMEM223,SNRPD3,COMTD1,UQCRC1,PDCD2,RPL36AL,SLC25A10,ENDOV,COPE,DPY30,FAM207A,PPIE,MRPL11,FAM50A,MAP2K2,ITPA,BAD,SF3B6,FAM162A,AURKB,ELP6,COX7B,ALKBH7,TMEM258,MRPL22,MYL6,GEMIN7,GEMIN6,TXN,MZT2B,HDAC10,SCRN2,ANKS3,ATRAID,MRPL17,GON7,UCK1,SMDT1,PIGQ,SEC61G,MARCKSL1,RAD51C,LAMTOR1,TAF10,RNF25,DBNL,COX4I1,TMEM60,NUP88,NFKBIL1,ECSIT,YAE1,SAC3D1,DYRK4,CENPS,RPS6,POLR1C,NR2C2AP,MZT2A,PSMG4,EIF2B3,SAAL1,ARFRP1,CIAO2B,MCRIP2,IFI27L1,BRAT1,AAMDC,GPAA1,PSMG3,TRAPPC3,MRPL27,MYL6B,NOL7,UQCR10,WDR46,C19orf25,FAM234A,IPO4,ARPC4,MYG1,CSKMT,ZMYND19,ERCC1,PSMB1,THOP1,CKS1B,NAT9,NDUFA1,ABHD14A,ATP5MC3,LSM2,PCNA,TRMT61A,COA5,DYNLL1,MICOS10,DPH7,SSBP1,TEX30,NSMCE4A,CKLF,ATP5F1D,ATP5PF,RPS13,UBE2M,MRPL43,CEP131,TOMM7,XPA,ECHS1,RUVBL2,C8orf76,WDR74,B9D2,EIF3I,NOP53,SMIM19,FKBP2,IMMP1L,HSD17B10,SRRT,SSR2,NDUFB10,RPS17,TPRA1,PRDX5,BOLA3,UBA52,NUDT16L1,C15orf61,RPS29,TXN2,MRPS26,HDDC3,TMEM161A,GPANK1,IMP3,NDUFA13,CHCHD5,C7orf50,C1orf122,DCTN3,C16orf86,RCC1L,NDUFAB1,GADD45GIP1,SNRPD2,ZSWIM7,SNF8,EIF6,SLC25A11,HRAS,MPDU1,ERH,RPS26,DDX39A,HSD17B8,NDUFAF6,ATAD3B,TTC1,NDUFA4,MUTYH,BANF1,BCL7C,SEC13,SLC25A1,TMEM9,SRM,RPL27,COMMD5,CINP,GSTZ1,HAX1,NDUFAF4,ZNHIT1,BIRC5,PHKG2,NARF,PMF1,SARS2,RTN4IP1,ZC3HC1,TIMM10,BUD31,POLR2J,PPP1R16A,SS18L2,SENP3,RFXANK,FAM89B,ARL3,ERCC2,NT5C3B,CLN3,POLR2I,MED31,UROS,PPP1CA,MRTO4,MPC1,NUDT2,LSM4,C1orf50,SNRPB,APOM,PSMA7,UFD1,STOML2,C20orf27,C12orf43,COX17,ATP5MJ,SAMD1,AAAS,ATP6V1F,RABAC1,RNASEH2B,UBL5,TXNDC17,RPS11,GAMT,PLEKHJ1,LIPT2,C8orf82,PSMA4,TXNL4A,PARD6A,STX5,GPATCH3,NDUFB7,ING4,NSUN5,ELOC,UBXN1,MRPS33,CLN6,TBC1D7,DNAJC7,THYN1,MRPS18C,MANF,PGLS,PRAF2,GLRX3,TSFM,PEX16,ETFB,GTF2A2,TEDC1,TRAIP,AUP1,WASHC1,PDAP1,RBM10,PEMT,NDUFC1,RPL36A,COA8,THAP3,NOL12,VEGFB,ARMC7,OAZ1,PYCR3,ATOX1,MOB2,NDUFA8,PRPF19,COMMD6,COASY,RPS24,NDUFB6,TIMM29,TMA7,LMAN2,ITGAE,EMC9,PAM16,YBEY,SOX12,TPRKB,SPATA24,POLR2E,KLHDC3,PSMC5,NEDD8,DUSP28,NACA,BOLA1,PXMP2,ENO1,ANP32A,TSR3,RPS19BP1,SMIM4,SAP30BP,THAP8,RNASEH2C,VPS16,TOMM5,TMEM11,TYMS,NSMCE1,PIN1,GALK1,RHBDD3,TMEM238,RNF5,DGCR6L,PIGU,PMPCA,SPSB2,REX1BD,TFPT,FASTK,CYHR1,SIRT6,ZNRD2,ECH1,HSPB11,EMC8,MRPL54,FAM174C,SNRPB2,HINT1 | | Exist in public source | | NA |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| Only predicted by TDF | | ANKRD39,SGSM3,DPH7,YDJC,MRPL14,TBL3,LAMTOR2,MRPL43,VPS4A,ZNHIT3,PDCD2L,THOP1,ATP6V1F,NUDC,METTL12,HAUS1,DDX49,LIPT2,CCDC167,C11orf98,PGLS,C19orf73,GTF2A2,OXLD1,TOMM5,RPS26,NFKBIB,UBXN1,BAX,PARK7,PQBP1,SPATA24,CUEDC2,HEMK1,GPATCH3,ELOF1,EIF3G,TMEM9,ATP5G2,URM1,DYRK4,NDUFAF4,FKBPL,TRAPPC3,C7orf50,RBM10,PIH1D1,ITPA,TAX1BP3,COX6A1,ALKBH4,GPAA1,NDUFB1,SHFM1,TMEM160,TIMM17B,VPS28,TUSC2,PSMD4,MIIP,EMC8,PRDX5,ENO3,CDC34,COQ3,TRIAP1,HINT2,LSM2,BANF1,QTRT1,RPSA,TIMM22,C14orf2,PSMA5,HSCB,NTMT1,PRR13,NDUFB11,RBM42,PPCDC,NT5M,H2AFX,CCDC137,C2orf68,C8orf82,NT5C,ELAC1,UBE2T,NDUFS5,FAM234A,C14orf142,IFI27L1,THOC6,SCNM1,EBNA1BP2,S100A13,RPL35,SPAG7,PFN1,PTCD1,WDR13,HCFC1R1,TFPT,MAP2K2,NIT2,ARIH2OS,C20orf24,COPE,NDUFA8,UFSP1,TRMT112,USMG5,C16orf91,SLC25A10,RPP25L,GATC,NMRAL1,UBA52 | | Exist in public source | | NA |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | RBMS2,CNOT1,CMIP,NF1,FAM168B,GSK3B,SLC35E1,DENND4C,MYH9,KDM3B,NAF1,RALGAPB,USF3,TCF20,SIPA1L1,KHNYN,SMARCC2,TACC1,LRBA,UBXN7,RAB3GAP1,LARP1,DDR1,KIAA1109,PTPN11,RNF213,KIAA0100,PLEKHB2,AP1G1,KANK2,HECTD1,CREBBP,HTT,FOXK1,ARIH1,VPS13B,TK2,BTBD9,ZFYVE26,ANKRD11,ITPRIPL2,SEC24B,CLTC,MAN1A2,CTNND1,CREBRF,ATF7,CIC,SH3GLB1,NBR1,ATP11B,PRRC2C,RIC1,ZC3H13,NUMB,GBP3,PHF3,SNX29,PLEKHM1,GBF1,BBX,LONP2,TMEM127,ARID1B,FOXJ2,RNF111,TP53BP1,PCNX1,JADE2,USP32,LRP10,KIDINS220,DYNC1I2,GIGYF2,MVP,STAT3,BTBD10,PIAS1,FBXO11,SEC23A,RAI1,STK24,NCOA2,ARHGAP5,NFIC,BCL2L2,SFXN3,ASXL2,CRIM1,ROCK1,MAPK1,RNF169,FTO,CHMP3,ABHD2,TBC1D2B,UTRN,MYCBP2,BAZ2A,PIKFYVE,IL13RA1,ARPIN,MYOF,ARSB,ARHGAP1,TNKS1BP1,ARID4A,SCARB2,ZCCHC2,HSPG2,MED12,ASH1L,NDST1,DYNC1LI2,MAP3K3,KBTBD4,MTMR1,C2CD3,RASA1,TNS1,APP,RBM43,TGFBRAP1,CERT1,PTPRF,STAT6,SSH1,TMEM131,NCOA4,SMG6,MED13L,PHC3,KIAA1217,BCL9L,NUP98,IGF2R,ZCCHC14,GOLGA2,KLHL20,DOCK9,PLBD2,TRIP12,ATP9B,RARG,TBC1D9,NFAT5,MYO18A,GTF2I,SOS1,RAB3D,TGOLN2,HBP1,SOS2,SPTLC1,CSNK1A1,H6PD,DYNC1H1,CAPN1,PLEKHG3,HEATR5B,HUWE1,ACTN4,ELK3,LEPROT,TEP1,TMBIM1,C1RL,TBC1D9B,IL6ST,SUFU,KMT2E,WDR44,GCC2,CAST,TRIO,EVC,SH3PXD2B,SIK2,ARFGEF1,NOTCH2,FNDC3B,MPRIP,AHNAK,GLYR1,ZNFX1,FYCO1,HERC1,SPOPL | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000234327 | ENST00000623522 | exon_skip_140339 | chr16:635611-635774 | -20.66 | -0.1465 | METTL26 | ENST00000301686 | Frame-shift | | ENSG00000234327 | ENST00000570712 | exon_skip_303345 | chr19:17227839-17228005 | -15.08 | -0.1077 | OCEL1 | ENST00000215061 | Frame-shift | | ENSG00000234327 | ENST00000570712 | exon_skip_478176 | chr7:100435630-100435767 | -17.37 | -0.1623 | PPP1R35 | ENST00000292330 | Frame-shift |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation | | ENSG00000234327 | ENSG00000035141 | FAM136A | BLCA,CESC,LGG,LIHC,OV,SARC,TGCT,THCA,THYM,UCEC | UCEC | | | ENSG00000234327 | ENSG00000049541 | RFC2 | BLCA,CESC,GBM,LGG,LIHC,SKCM,TGCT,THYM,UCEC,UCS | UCEC | | | ENSG00000234327 | ENSG00000077152 | UBE2T | BLCA,GBM,LIHC,OV,TGCT,THYM,UCEC,UCS | LIHC,UCEC | | | ENSG00000234327 | ENSG00000089685 | BIRC5 | BLCA,CESC,DLBC,GBM,LIHC,OV,SARC,TGCT,THYM,UCEC,UCS | LIHC,UCEC | | | ENSG00000234327 | ENSG00000106268 | NUDT1 | BLCA,CESC,DLBC,GBM,LGG,LIHC,OV,SARC,TGCT,THYM,UCEC,UCS | LIHC,UCEC | | | ENSG00000234327 | ENSG00000108641 | B9D1 | BLCA,CESC,DLBC,GBM,LIHC,OV,PCPG,SKCM,TGCT,THCA | LIHC | | | ENSG00000234327 | ENSG00000111665 | CDCA3 | BLCA,LIHC,OV,TGCT,THYM,UCEC,UCS | LIHC,UCEC | | | ENSG00000234327 | ENSG00000117632 | STMN1 | BLCA,OV,TGCT,THYM,UCEC,UCS,UVM | UCEC | | | ENSG00000234327 | ENSG00000123136 | DDX39A | BLCA,DLBC,LGG,LIHC,TGCT,THCA,THYM | LIHC | | | ENSG00000234327 | ENSG00000131153 | GINS2 | BLCA,DLBC,GBM,PCPG,THYM,UCEC,UCS | UCEC | | | ENSG00000234327 | ENSG00000131495 | NDUFA2 | BLCA,CESC,DLBC,GBM,LGG,LIHC,OV,TGCT,THCA,THYM,UCEC | UCEC | | | ENSG00000234327 | ENSG00000132646 | PCNA | BLCA,GBM,TGCT,THYM,UCEC,UCS | UCEC | | | ENSG00000234327 | ENSG00000134222 | PSRC1 | BLCA,DLBC,TGCT,THYM,UCEC,UCS | UCEC | | | ENSG00000234327 | ENSG00000135617 | PRADC1 | BLCA,CESC,DLBC,GBM,LGG,LIHC,OV,PCPG,THCA,THYM,UCEC | UCEC | | | ENSG00000234327 | ENSG00000161888 | SPC24 | BLCA,CESC,DLBC,LIHC,THYM,UCEC | LIHC,UCEC | | | ENSG00000234327 | ENSG00000162062 | TEDC2 | BLCA,CESC,DLBC,LGG,LIHC,SARC,THYM,UCEC,UCS | LIHC,UCEC | | | ENSG00000234327 | ENSG00000163156 | SCNM1 | BLCA,DLBC,GBM,LGG,LIHC,OV,SARC,TGCT,THCA,THYM,UCS | LIHC | | | ENSG00000234327 | ENSG00000163479 | SSR2 | BLCA,CESC,DLBC,GBM,LGG,LIHC,OV,THCA,THYM | LIHC | | | ENSG00000234327 | ENSG00000163918 | RFC4 | BLCA,GBM,LGG,LIHC,OV,THYM,UCEC | LIHC,UCEC | | | ENSG00000234327 | ENSG00000164087 | POC1A | BLCA,CESC,LIHC,SARC,THYM,UCEC | LIHC,UCEC | | | ENSG00000234327 | ENSG00000164611 | PTTG1 | BLCA,DLBC,LIHC,OV,TGCT,THCA,THYM,UCEC | LIHC,UCEC | | | ENSG00000234327 | ENSG00000164885 | CDK5 | BLCA,CESC,OV,SARC,TGCT,THCA,THYM,UCEC | UCEC | | | ENSG00000234327 | ENSG00000166508 | MCM7 | BLCA,DLBC,LGG,LIHC,THYM | LIHC | | | ENSG00000234327 | ENSG00000167272 | POP5 | BLCA,CESC,DLBC,GBM,LGG,LIHC,OV,SARC,SKCM,TGCT,THCA,THYM,UCEC,UCS,UVM | UCEC | | | ENSG00000234327 | ENSG00000167747 | C19orf48 | BLCA,CESC,DLBC,LGG,LIHC,TGCT,THCA,THYM | LIHC | | | ENSG00000234327 | ENSG00000168061 | SAC3D1 | BLCA,CESC,DLBC,LGG,LIHC,OV,SARC,THCA,THYM,UCEC | LIHC,UCEC | | | ENSG00000234327 | ENSG00000168393 | DTYMK | BLCA,CESC,DLBC,GBM,LGG,LIHC,OV,TGCT,THCA,THYM,UCEC | LIHC,UCEC | | | ENSG00000234327 | ENSG00000168496 | FEN1 | BLCA,LIHC,TGCT,THYM,UCEC | LIHC,UCEC | | | ENSG00000234327 | ENSG00000178999 | AURKB | BLCA,LIHC,OV,SARC,TGCT,THYM,UCEC,UCS | LIHC,UCEC | | | ENSG00000234327 | ENSG00000182173 | TSEN54 | BLCA,CESC,DLBC,LGG,LIHC,PCPG,TGCT,THYM,UCEC | LIHC | | | ENSG00000234327 | ENSG00000183011 | NAA38 | BLCA,CESC,DLBC,GBM,LGG,LIHC,OV,PCPG,SARC,THCA,THYM,UCEC,UCS | UCEC | | | ENSG00000234327 | ENSG00000197858 | GPAA1 | BLCA,CESC,DLBC,LGG,LIHC,THCA,THYM | LIHC | | | ENSG00000234327 | ENSG00000198937 | CCDC167 | BLCA,CESC,DLBC,GBM,LGG,LIHC,OV,TGCT,THCA,THYM,UCEC,UVM | UCEC | | | ENSG00000234327 | ENSG00000008324 | SS18L2 | CESC,DLBC,GBM,LGG,LIHC,OV,SARC,TGCT,THCA,THYM,UCEC,UVM | UCEC | | | ENSG00000234327 | ENSG00000064490 | RFXANK | CESC,DLBC,LGG,LIHC,THCA,THYM | LIHC | | | ENSG00000234327 | ENSG00000100116 | GCAT | CESC,DLBC,LGG,THCA,THYM,UCEC | UCEC | | | ENSG00000234327 | ENSG00000100416 | TRMU | CESC,DLBC,LGG,LIHC,SARC,TGCT,THCA,THYM,UCEC,UCS | UCEC | | | ENSG00000234327 | ENSG00000100908 | EMC9 | CESC,DLBC,LGG,LIHC,OV,THCA,THYM,UCEC | UCEC | | | ENSG00000234327 | ENSG00000101464 | PIGU | CESC,LGG,LIHC,THCA,THYM | LIHC | | | ENSG00000234327 | ENSG00000104524 | PYCR3 | CESC,DLBC,GBM,LGG,LIHC,THCA | LIHC | | | ENSG00000234327 | ENSG00000105619 | TFPT | CESC,DLBC,LGG,LIHC,PCPG,SARC,THCA,THYM,UCEC | UCEC | | | ENSG00000234327 | ENSG00000111671 | SPSB2 | CESC,DLBC,LIHC,PCPG,TGCT,THCA,THYM | LIHC | | | ENSG00000234327 | ENSG00000116898 | MRPS15 | CESC,DLBC,GBM,LGG,LIHC,SARC,TGCT,THCA,THYM,UCEC | UCEC | | | ENSG00000234327 | ENSG00000124172 | ATP5F1E | CESC,DLBC,GBM,LGG,LIHC,OV,SARC,THCA,THYM,UCEC,UCS | UCEC | | | ENSG00000234327 | ENSG00000125835 | SNRPB | CESC,DLBC,GBM,LGG,LIHC,OV,TGCT,THYM,UCEC,UCS | LIHC,UCEC | | | ENSG00000234327 | ENSG00000127922 | SEM1 | CESC,DLBC,GBM,LGG,LIHC,OV,SARC,TGCT,THCA,THYM,UCEC | UCEC | | | ENSG00000234327 | ENSG00000130770 | ATP5IF1 | CESC,DLBC,GBM,LGG,OV,SARC,TGCT,THCA,THYM,UCEC | UCEC | | | ENSG00000234327 | ENSG00000142252 | GEMIN7 | CESC,DLBC,GBM,LGG,LIHC,SARC,TGCT,THCA,THYM,UCEC | UCEC | | | ENSG00000234327 | ENSG00000142684 | ZNF593 | CESC,DLBC,GBM,LGG,LIHC,OV,SARC,TGCT,THCA,THYM,UCEC | UCEC | | | ENSG00000234327 | ENSG00000148291 | SURF2 | CESC,DLBC,GBM,LGG,LIHC,OV,SARC,TGCT,THCA,THYM,UCEC,UCS | UCEC | | | ENSG00000234327 | ENSG00000160972 | PPP1R16A | CESC,DLBC,LGG,LIHC,THCA | LIHC | | | ENSG00000234327 | ENSG00000163463 | KRTCAP2 | CESC,DLBC,LGG,LIHC,OV,THYM,UCEC | LIHC | | | ENSG00000234327 | ENSG00000168096 | ANKS3 | CESC,DLBC,LGG,LIHC,PCPG,THCA | LIHC | | | ENSG00000234327 | ENSG00000173915 | ATP5MK | CESC,DLBC,GBM,LGG,LIHC,OV,SARC,TGCT,THCA,THYM,UCEC,UCS | UCEC | | | ENSG00000234327 | ENSG00000174744 | BRMS1 | CESC,DLBC,LGG,LIHC,SARC,TGCT,THCA,THYM,UCEC,UCS | UCEC | | | ENSG00000234327 | ENSG00000179271 | GADD45GIP1 | CESC,DLBC,GBM,LGG,LIHC,PCPG,SARC,TGCT,THCA,THYM,UCEC | UCEC | | | ENSG00000234327 | ENSG00000184207 | PGP | CESC,DLBC,LIHC,OV,SARC,TGCT,THCA,THYM,UCEC | LIHC,UCEC | | | ENSG00000234327 | ENSG00000185347 | TEDC1 | CESC,DLBC,LGG,PCPG,SARC,TGCT,THCA,THYM,UCEC | UCEC | | | ENSG00000234327 | ENSG00000186010 | NDUFA13 | CESC,DLBC,GBM,LGG,LIHC,OV,PCPG,TGCT,THCA,THYM,UCEC | UCEC | | | ENSG00000234327 | ENSG00000188603 | CLN3 | CESC,LGG,LIHC,THCA,THYM | LIHC | | | ENSG00000234327 | ENSG00000217555 | CKLF | CESC,GBM,LGG,LIHC,THYM,UCEC | LIHC | | | ENSG00000234327 | ENSG00000256269 | HMBS | CESC,DLBC,GBM,LGG,LIHC,OV,SARC,THCA,THYM,UCEC | UCEC | | | ENSG00000234327 | ENSG00000267673 | FDX2 | CESC,DLBC,GBM,LGG,LIHC,OV,PCPG,THCA,THYM,UCEC | UCEC | | | ENSG00000234327 | ENSG00000109065 | NAT9 | DLBC,LGG,LIHC,THCA,UVM | LIHC | | | ENSG00000234327 | ENSG00000117399 | CDC20 | DLBC,LIHC,OV,SARC,TGCT,THYM,UCEC | LIHC,UCEC | | | ENSG00000234327 | ENSG00000118939 | UCHL3 | DLBC,GBM,LGG,LIHC,OV,SARC,TGCT,THCA,THYM,UCEC | UCEC | | | ENSG00000234327 | ENSG00000129235 | TXNDC17 | DLBC,GBM,LGG,LIHC,OV,PCPG,SARC,SKCM,TGCT,THYM,UCEC,UCS | UCEC | | | ENSG00000234327 | ENSG00000141858 | SAMD1 | DLBC,LGG,LIHC,TGCT,THYM,UCEC,UCS | UCEC | | | ENSG00000234327 | ENSG00000143793 | C1orf35 | DLBC,LGG,LIHC,PCPG,TGCT,THCA,THYM,UCEC,UCS | LIHC | | | ENSG00000234327 | ENSG00000163584 | RPL22L1 | DLBC,GBM,LIHC,PCPG,UCEC | LIHC,UCEC | | | ENSG00000234327 | ENSG00000171960 | PPIH | DLBC,GBM,LGG,LIHC,OV,SARC,TGCT,THCA,THYM,UCEC,UCS | UCEC | | | ENSG00000234327 | ENSG00000173207 | CKS1B | DLBC,GBM,LIHC,OV,TGCT,THYM,UCEC,UCS | LIHC,UCEC | | | ENSG00000234327 | ENSG00000184162 | NR2C2AP | DLBC,GBM,LGG,LIHC,THYM,UCEC | LIHC | | | ENSG00000234327 | ENSG00000241343 | RPL36A | DLBC,GBM,LGG,LIHC,OV,TGCT,THCA,THYM,UCEC | LIHC | | | ENSG00000234327 | ENSG00000261236 | BOP1 | DLBC,LIHC,TGCT,THCA,THYM,UCS | LIHC | | | ENSG00000234327 | ENSG00000273899 | NOL12 | DLBC,LIHC,SARC,THCA,THYM,UCEC | LIHC | | | ENSG00000234327 | ENSG00000115541 | HSPE1 | GBM,LGG,LIHC,OV,TGCT,UCEC | UCEC | | | ENSG00000234327 | ENSG00000116161 | CACYBP | GBM,LIHC,OV,TGCT,UCEC,UCS | LIHC | | | ENSG00000234327 | ENSG00000152253 | SPC25 | GBM,LIHC,TGCT,THYM,UCEC,UCS | LIHC,UCEC | | | ENSG00000234327 | ENSG00000163170 | BOLA3 | GBM,LGG,LIHC,OV,SARC,TGCT,THCA,THYM,UCEC | UCEC | | | ENSG00000234327 | ENSG00000168275 | COA6 | GBM,LGG,LIHC,OV,TGCT,THCA,THYM,UCEC,UCS | LIHC,UCEC | | | ENSG00000234327 | ENSG00000189376 | C8orf76 | GBM,LGG,LIHC,THCA,THYM,UCEC,UCS | LIHC | | | ENSG00000234327 | ENSG00000071859 | FAM50A | LGG,LIHC,PCPG,SARC,TGCT,THCA | LIHC | | | ENSG00000234327 | ENSG00000153044 | CENPH | LGG,LIHC,THYM,UCEC,UCS,UVM | LIHC,UCEC | | | ENSG00000234327 | ENSG00000175063 | UBE2C | LIHC,SARC,TGCT,THYM,UCEC | LIHC,UCEC | | | ENSG00000234327 | ENSG00000189159 | JPT1 | LIHC,PCPG,SARC,TGCT,THYM,UCS | LIHC | |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation | | ENSG00000234327 | ENST00000571138 | IL6ST | ENSG00000134352 | ENST00000502326 | -0.1028 | 125 | - | UCEC,LIHC | | ENSG00000234327 | ENST00000571138 | C1RL | ENSG00000139178 | ENST00000545280 | -0.2094 | 1 | - | LIHC | | ENSG00000234327 | ENST00000413077 | IL6ST | ENSG00000134352 | ENST00000502326 | -0.1711 | 92 | - | UCEC,LIHC | | ENSG00000234327 | ENST00000413077 | C1RL | ENSG00000139178 | ENST00000545280 | -0.1969 | 1 | - | LIHC | | ENSG00000234327 | ENST00000413077 | C1RL | ENSG00000139178 | ENST00000537833 | -0.1728 | 1 | - | LIHC | | ENSG00000234327 | ENST00000623522 | IL6ST | ENSG00000134352 | ENST00000502326 | -0.1538 | 1570 | - | UCEC,LIHC | | ENSG00000234327 | ENST00000623522 | C1RL | ENSG00000139178 | ENST00000545280 | -0.1842 | 1191 | - | LIHC | | ENSG00000234327 | ENST00000571138 | C1RL | ENSG00000139178 | ENST00000545337 | -0.2502 | 1 | - | LIHC | | ENSG00000234327 | ENST00000413077 | C1RL | ENSG00000139178 | ENST00000534969 | -0.1728 | 1 | - | LIHC | | ENSG00000234327 | ENST00000413077 | C1RL | ENSG00000139178 | ENST00000545337 | -0.1641 | 1 | - | LIHC | | ENSG00000234327 | ENST00000623522 | C1RL | ENSG00000139178 | ENST00000534969 | -0.1070 | 1250 | - | LIHC | | ENSG00000234327 | ENST00000623522 | C1RL | ENSG00000139178 | ENST00000545337 | -0.1273 | 1138 | - | LIHC |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000234327.6 | ENST00000571138.4 | 144 | 16 | 450 | | ENSG00000234327.6 | ENST00000413077.1 | 80 | 52 | 294 | | ENSG00000234327.6 | ENST00000623522.1 | 67 | 105 | 308 | | ENSG00000234327.6 | ENST00000570712.1 | 256 | 1571 | 801 |
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