lncRNA targets the enhancer region and positively regulates the gene expression. |
lncRNA targets the promoter region and positively regulates the gene expression. |
lncRNA targets the promoter region and negatively regulates the gene expression. |
lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
Only predicted by lncTar | RCC2,MMS19,SRRT,EFTUD2,ABCF2,RBM14,PPRC1,CEP131,NPRL3,RPTOR,LIG1,TRIM65,NUP62,ATXN2L,PRRC2A,USP36,GIT1,MTHFD1L,TBC1D16,LIG3,MSH6,DDX42,LARP1,HMGXB3,NONO,NUP93,CAD,EP400,SMPD4,ILF3,SART3,RBM28,DNMT1,FUS,DDX23,DLGAP4,FOXK2,RBM19,FOXK1,UBFD1,KLC2,KIAA0930,NOP2,TCOF1,RHBDF2,CEP250 | Exist in public source | NA |
lncRNA targets the skipped exon region. | -lncRNA and exonskipping events are positively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
-lncRNA and exonskipping events are negatively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF |
lncRNA targets by miRNA. |
LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
RNA A-to-I editing events in lncRNA. |
LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
Edited-associated DElncRNAs in cancer. |
LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
lncRNA regulates differentially expressed genes by function as enhancer. |
LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation | ENSG00000233554 | ENST00000426270 | CEP250 | ENSG00000126001 | ENST00000397524 | -0.1436 | 162 | CHOL,LIHC,READ | - | ENSG00000233554 | ENST00000426270 | CEP250 | ENSG00000126001 | ENST00000422671 | -2.7400 | 310 | CHOL,LIHC,READ | - | ENSG00000233554 | ENST00000426270 | LIG1 | ENSG00000105486 | ENST00000263274 | -0.1488 | 1 | CHOL,BRCA,LIHC,STAD | - | ENSG00000233554 | ENST00000426270 | LIG1 | ENSG00000105486 | ENST00000536218 | -0.1488 | 1 | CHOL,BRCA,LIHC,STAD | - | ENSG00000233554 | ENST00000426270 | LIG1 | ENSG00000105486 | ENST00000427526 | -0.1488 | 1 | CHOL,BRCA,LIHC,STAD | - | ENSG00000233554 | ENST00000426270 | LIG1 | ENSG00000105486 | ENST00000542460 | -0.1795 | 1 | CHOL,BRCA,LIHC,STAD | - | ENSG00000233554 | ENST00000426270 | NUP62 | ENSG00000213024 | ENST00000597029 | -0.1356 | 92 | CHOL | - | ENSG00000233554 | ENST00000426270 | NUP62 | ENSG00000213024 | ENST00000597723 | -0.1356 | 92 | CHOL | - | ENSG00000233554 | ENST00000426270 | NUP62 | ENSG00000213024 | ENST00000596217 | -0.1125 | 1 | CHOL | - | ENSG00000233554 | ENST00000426270 | TCOF1 | ENSG00000070814 | ENST00000439160 | -0.1783 | 1 | CHOL,COAD,LIHC,READ | - | ENSG00000233554 | ENST00000426270 | TCOF1 | ENSG00000070814 | ENST00000513346 | -0.1783 | 1 | CHOL,COAD,LIHC,READ | - | ENSG00000233554 | ENST00000426270 | TCOF1 | ENSG00000070814 | ENST00000515516 | -0.2017 | 30 | CHOL,COAD,LIHC,READ | - | ENSG00000233554 | ENST00000442432 | CEP250 | ENSG00000126001 | ENST00000397524 | -0.1412 | 134 | CHOL,LIHC,READ | - | ENSG00000233554 | ENST00000442432 | CEP250 | ENSG00000126001 | ENST00000422671 | -2.7400 | 372 | CHOL,LIHC,READ | - | ENSG00000233554 | ENST00000442432 | LIG1 | ENSG00000105486 | ENST00000263274 | -0.1215 | 1 | CHOL,BRCA,LIHC,STAD | - | ENSG00000233554 | ENST00000442432 | LIG1 | ENSG00000105486 | ENST00000536218 | -0.1215 | 1 | CHOL,BRCA,LIHC,STAD | - | ENSG00000233554 | ENST00000442432 | LIG1 | ENSG00000105486 | ENST00000427526 | -0.1215 | 1 | CHOL,BRCA,LIHC,STAD | - | ENSG00000233554 | ENST00000442432 | LIG1 | ENSG00000105486 | ENST00000542460 | -0.1795 | 1 | CHOL,BRCA,LIHC,STAD | - | ENSG00000233554 | ENST00000442432 | NUP62 | ENSG00000213024 | ENST00000597029 | -0.2680 | 1 | CHOL | - | ENSG00000233554 | ENST00000442432 | NUP62 | ENSG00000213024 | ENST00000597723 | -0.2680 | 1 | CHOL | - | ENSG00000233554 | ENST00000442432 | NUP62 | ENSG00000213024 | ENST00000596217 | -0.1125 | 1 | CHOL | - | ENSG00000233554 | ENST00000442432 | TCOF1 | ENSG00000070814 | ENST00000439160 | -0.1783 | 1 | CHOL,COAD,LIHC,READ | - | ENSG00000233554 | ENST00000442432 | TCOF1 | ENSG00000070814 | ENST00000513346 | -0.1783 | 1 | CHOL,COAD,LIHC,READ | - | ENSG00000233554 | ENST00000442432 | TCOF1 | ENSG00000070814 | ENST00000515516 | -0.2017 | 30 | CHOL,COAD,LIHC,READ | - | ENSG00000233554 | ENST00000426270 | DLGAP4 | ENSG00000080845 | ENST00000373913 | -0.1257 | 1 | CHOL | - | ENSG00000233554 | ENST00000426270 | DLGAP4 | ENSG00000080845 | ENST00000339266 | -0.1257 | 1 | CHOL | - | ENSG00000233554 | ENST00000426270 | DLGAP4 | ENSG00000080845 | ENST00000401952 | -0.1257 | 1 | CHOL | - | ENSG00000233554 | ENST00000426270 | DLGAP4 | ENSG00000080845 | ENST00000475894 | -0.1257 | 1 | CHOL | - | ENSG00000233554 | ENST00000426270 | CAD | ENSG00000084774 | ENST00000428460 | -0.3005 | 40 | CHOL,COAD,LIHC,STAD,READ | - | ENSG00000233554 | ENST00000426270 | NUP93 | ENSG00000102900 | ENST00000566678 | -0.1467 | 254 | CHOL | - | ENSG00000233554 | ENST00000426270 | NUP93 | ENSG00000102900 | ENST00000564887 | -0.1004 | 256 | CHOL | - | ENSG00000233554 | ENST00000426270 | NUP93 | ENSG00000102900 | ENST00000569322 | -0.1004 | 256 | CHOL | - | ENSG00000233554 | ENST00000426270 | NPRL3 | ENSG00000103148 | ENST00000422814 | -0.1523 | 1 | COAD,READ | - | ENSG00000233554 | ENST00000426270 | GIT1 | ENSG00000108262 | ENST00000225394 | -0.1115 | 1 | CHOL,READ | - | ENSG00000233554 | ENST00000426270 | GIT1 | ENSG00000108262 | ENST00000578266 | -0.8511 | 59 | CHOL,READ | - | ENSG00000233554 | ENST00000426270 | MTHFD1L | ENSG00000120254 | ENST00000367307 | -0.2026 | 1 | CHOL,COAD,LIHC,STAD,READ | - | ENSG00000233554 | ENST00000426270 | RHBDF2 | ENSG00000129667 | ENST00000591860 | -0.1521 | 1 | CHOL,COAD,LIHC,READ | - | ENSG00000233554 | ENST00000426270 | TRIM65 | ENSG00000141569 | ENST00000592642 | -0.1467 | 1 | CHOL,LIHC,READ | - | ENSG00000233554 | ENST00000426270 | TRIM65 | ENSG00000141569 | ENST00000540128 | -0.1269 | 4 | CHOL,LIHC,READ | - | ENSG00000233554 | ENST00000426270 | CEP131 | ENSG00000141577 | ENST00000374782 | -0.1351 | 1 | CHOL,LIHC | - | ENSG00000233554 | ENST00000426270 | CEP131 | ENSG00000141577 | ENST00000269392 | -0.1351 | 1 | CHOL,LIHC | - | ENSG00000233554 | ENST00000426270 | CEP131 | ENSG00000141577 | ENST00000570817 | -0.1097 | 30 | CHOL,LIHC | - | ENSG00000233554 | ENST00000426270 | CEP131 | ENSG00000141577 | ENST00000573053 | -0.1351 | 1 | CHOL,LIHC | - | ENSG00000233554 | ENST00000426270 | CEP131 | ENSG00000141577 | ENST00000450824 | -0.1384 | 1 | CHOL,LIHC | - | ENSG00000233554 | ENST00000426270 | CEP131 | ENSG00000141577 | ENST00000575907 | -0.1384 | 1 | CHOL,LIHC | - | ENSG00000233554 | ENST00000426270 | TBC1D16 | ENSG00000167291 | ENST00000572862 | -0.1329 | 12 | CHOL,COAD,LIHC,READ | - | ENSG00000233554 | ENST00000426270 | TBC1D16 | ENSG00000167291 | ENST00000570373 | -0.4121 | 45 | CHOL,COAD,LIHC,READ | - | ENSG00000233554 | ENST00000442432 | DLGAP4 | ENSG00000080845 | ENST00000373907 | -0.1053 | 1 | CHOL | - | ENSG00000233554 | ENST00000442432 | DLGAP4 | ENSG00000080845 | ENST00000340491 | -0.1053 | 1 | CHOL | - | ENSG00000233554 | ENST00000442432 | DLGAP4 | ENSG00000080845 | ENST00000489701 | -0.1326 | 1 | CHOL | - | ENSG00000233554 | ENST00000442432 | CAD | ENSG00000084774 | ENST00000403525 | -0.1391 | 157 | CHOL,COAD,LIHC,STAD,READ | - | ENSG00000233554 | ENST00000442432 | CAD | ENSG00000084774 | ENST00000428460 | -0.3005 | 40 | CHOL,COAD,LIHC,STAD,READ | - | ENSG00000233554 | ENST00000442432 | NUP93 | ENSG00000102900 | ENST00000569842 | -0.2864 | 111 | CHOL | - | ENSG00000233554 | ENST00000442432 | NUP93 | ENSG00000102900 | ENST00000566678 | -0.1467 | 316 | CHOL | - | ENSG00000233554 | ENST00000442432 | NUP93 | ENSG00000102900 | ENST00000564887 | -0.1004 | 318 | CHOL | - | ENSG00000233554 | ENST00000442432 | NUP93 | ENSG00000102900 | ENST00000563405 | -0.1190 | 119 | CHOL | - | ENSG00000233554 | ENST00000442432 | NUP93 | ENSG00000102900 | ENST00000569322 | -0.1004 | 318 | CHOL | - | ENSG00000233554 | ENST00000442432 | NPRL3 | ENSG00000103148 | ENST00000422814 | -0.1281 | 1 | COAD,READ | - | ENSG00000233554 | ENST00000442432 | GIT1 | ENSG00000108262 | ENST00000578266 | -0.8511 | 59 | CHOL,READ | - | ENSG00000233554 | ENST00000442432 | MTHFD1L | ENSG00000120254 | ENST00000367307 | -0.2026 | 1 | CHOL,COAD,LIHC,STAD,READ | - | ENSG00000233554 | ENST00000442432 | RHBDF2 | ENSG00000129667 | ENST00000591860 | -0.1597 | 1 | CHOL,COAD,LIHC,READ | - | ENSG00000233554 | ENST00000442432 | TRIM65 | ENSG00000141569 | ENST00000592642 | -0.1467 | 1 | CHOL,LIHC,READ | - | ENSG00000233554 | ENST00000442432 | TRIM65 | ENSG00000141569 | ENST00000540128 | -0.1227 | 71 | CHOL,LIHC,READ | - | ENSG00000233554 | ENST00000442432 | CEP131 | ENSG00000141577 | ENST00000374782 | -0.1028 | 12 | CHOL,LIHC | - | ENSG00000233554 | ENST00000442432 | CEP131 | ENSG00000141577 | ENST00000269392 | -0.1028 | 12 | CHOL,LIHC | - | ENSG00000233554 | ENST00000442432 | CEP131 | ENSG00000141577 | ENST00000570817 | -0.1154 | 1 | CHOL,LIHC | - | ENSG00000233554 | ENST00000442432 | CEP131 | ENSG00000141577 | ENST00000573053 | -0.1198 | 1 | CHOL,LIHC | - | ENSG00000233554 | ENST00000442432 | CEP131 | ENSG00000141577 | ENST00000450824 | -0.1798 | 12 | CHOL,LIHC | - | ENSG00000233554 | ENST00000442432 | CEP131 | ENSG00000141577 | ENST00000575907 | -0.1798 | 12 | CHOL,LIHC | - | ENSG00000233554 | ENST00000442432 | TBC1D16 | ENSG00000167291 | ENST00000570373 | -0.4121 | 45 | CHOL,COAD,LIHC,READ | - | ENSG00000233554 | ENST00000442432 | KLC2 | ENSG00000174996 | ENST00000394078 | -0.1193 | 1 | CHOL,BRCA,LIHC | - | ENSG00000233554 | ENST00000442432 | RCC2 | ENSG00000179051 | ENST00000375433 | -0.1306 | 1 | CHOL,BRCA,STAD | - |
lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | ENSG00000233554.4 | ENST00000426270.4 | 67 | 268 | 65 | ENSG00000233554.4 | ENST00000442432.1 | 53 | 296 | 457 |
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