lncRNA targets the enhancer region and positively regulates the gene expression. |
lncRNA targets the promoter region and positively regulates the gene expression. |
lncRNA targets the promoter region and negatively regulates the gene expression. |
lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
Only predicted by lncTar | PREPL,IDH3A,DIP2B,METTL14,UBR3,HEATR1,AP5M1,ARID1A,KRAS,AIDA,ATM,RDX,KLHL18,PPP1R12A,TRIP11,KIAA1109,CCNT1,EFCAB14,EDEM1,EIF4G1,C11orf58,NEDD1,FCHO2,SMG1,PBRM1,TRAK1,ANKRD28,PSMC1,NCKAP1,ZFYVE26,SACM1L,MAN1A2,GMPS,CSNK1G1,SIN3A,PEAK1,YEATS2,ATP11B,MIER1,CEP120,ARID1B,STRN,KIDINS220,CYLD,CDC27,GTF2H3,TMCO3,AP4E1,FBXO11,APPBP2,SEC23A,GIT2,ITSN2,RNF13,KLF13,SMAD1,AGFG1,FAM102B,MYCBP2,SRFBP1,IPO8,UBE4B,NDST1,YAP1,EIF3A,POC1B,SAMD8,AZI2,DCP1A,KDM2A,ACTR2,FBXW2,GPATCH8,NUP188,TUT7,MED1,GTF2I,TGOLN2,HBP1,EIF4G2,CLASP1,NIN,NAA50,KIF1B,CAB39,HUWE1,PRKAR1A,CALU,BACH1,RB1,GOLM2,NSRP1,DCAF5,LIN52,SPTBN1,TRIO,FAM13B,NOTCH2,DPP8,SMARCAD1,ARCN1,FNDC3B,LATS1,FYCO1,HERC1,SPOPL,CUL3,RAPGEF1,TBC1D14,RIF1,FAM53C,ATG2B,SLC30A6,UHRF1BP1L,SUSD6,NAF1,FRS2,REV1,WDR82,IWS1,FOXJ3,MBNL1,EHBP1,UBXN7,BZW1,HECTD1,SPTY2D1,TUT4,SLAIN2,PKN2,GPATCH2L,TASOR,ARIH1,HELZ,SEC24B,FOXN2,KMT2D,FUBP1,USP33,SRRM1,RNF111,TP53BP1,TUBGCP4,USP32,VCL,G3BP1,TTLL5,GIGYF2,ANKIB1,STAT3,PIAS1,SLC25A24,TRPM7,TMEM43,UBE3C,LUZP1,RCOR1,DDX3X,CRIM1,ASXL2,USP47,POLR2B,KMT2C,PIKFYVE,ZCCHC2,ASH1L,MAP3K3,GNPTAB,DNAJC13,KDSR,XRN1,NFKB1,SMG6,EPG5,ADNP2,LTN1,KIAA0232,NUP98,TRIM23,CDK12,TRIP12,PDCD6IP,CHD2,GTF2A1,CHD9,UBE2G1,PRKAA1,SLC12A6,KPNA1,MORC3,TUBGCP3,SETD7,AKAP13,TTC37,AKIRIN1,TMEM167B,CFLAR,ELF1,CAPZA2,RPE,VRK2,TAF2,CPSF6,PIP5K1A,FEM1B,PAFAH1B1,CELF1,HAUS2,NEMF,CCNK,NCOR1,SDAD1,SCAF11,PGM2,CNOT1,TOPBP1,CAMSAP2,MAML1,CBL,TSTD2,MYH9,ZC3H7A,HERC2,FCF1,NCBP3,EIF4G3,AREL1,ATXN1L,SECISBP2L,UBR1,SEPTIN10,AMMECR1L,CHD8,NOP9,TSR1,MEF2D,HPS3,ADAM10,PRDM2,ARHGAP21,UBE4A,KIRREL1,CDV3,ERBIN,DNAJC14,SGTB,CAP1,ANKRD11,ITPRIPL2,ENTPD4,SMC4,ATF7,MACF1,SH3GLB1,NUMB,RIC1,KTN1,RAPGEF2,C5orf24,FLT1,MEX3C,HEG1,SNRK,OTUD4,DYNC1I2,NEK9,IREB2,SEPTIN11,CLIP1,NSUN3,ARNT,USP48,ATF2,RC3H2,SNAP23,GFM1,BCL2L2,MAPK1,ITPRID2,TBC1D2B,ARHGEF12,GNS,URB1,ROCK2,UEVLD,KPNA4,YWHAG,TNS1,SEC23IP,WNK1,SSH1,CHURC1,PPP4R2,FKBP15,KLHL5,SP1,CCNYL1,EPS15,SMCHD1,LYSMD3,KMT2A,ASAP1,MTF1,ZYG11B,RABGAP1,NFAT5,KIF2A,PPIG,REST,EMSY,G2E3,SOS2,THRAP3,DYNC1H1,TMOD3,PCYT1A,POLK,IDS,ELK3,DCAF17,IL6ST,AFF1,BLOC1S6,ABCE1,OSMR,MRTFB,USP8,PICALM,PTPN1,FYTTD1,SNX18,PHF2,IPO7,SETD2,CPSF2,SPG11,SMC6,HDHD2,GLYR1,DHX36,SLC4A1AP,IBTK,CREB1,NRDC,ATL3,RAB6A,QKI,VPS26C,AEBP2,CEP170,OXSR1,KDM3B,NT5C2,ZMYND11,UBQLN1,HIPK1,KPNA6,LIMS1,QTRT2,SNX6,NRBF2,TRAPPC10,MTR,MYO5A,APC,PTPN11,WDR36,SCYL2,AP1G1,POLR2A,ANKFY1,DDX46,NR2C2,CLTC,CTNND1,ARID4B,PARG,ATP2A2,SON,PIK3C3,ANKRD50,CSDE1,PTPN12,M6PR,APAF1,BBX,BTBD7,PCNX1,FAM98B,DDI2,UBR4,IQGAP1,SLMAP,CCP110,SNTB2,KLF7,FBXW11,PCNP,BPTF,STK24,VPS8,ARHGAP5,BCLAF1,ATXN7,INO80,TJP1,MFSD14A,CFAP97,COPB2,SETD5,NIPA2,ARSB,SCARB2,ARID4A,DYNC1LI2,VEZT,MIDEAS,ZC3H15,ZNF106,RASA1,CERT1,UBXN4,SENP6,PUM2,MED13L,SEPTIN2,SIK3,PPTC7,SYNJ1,TBC1D23,SBF2,GTF3C4,ECPAS,ERC1,TNPO1,RHOT1,SPAG9,HPS5,SPTLC1,SEC22C,HEATR5B,BIRC6,SEC31A,LSM12,ARL2BP,TMEM184C,PPFIA1,DENND5A,TPP2,AFAP1,MCFD2,NDUFS1 | Exist in public source | NA |
lncRNA targets the skipped exon region. | -lncRNA and exonskipping events are positively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation |
-lncRNA and exonskipping events are negatively correlated. |
LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF |
lncRNA targets by miRNA. |
LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
RNA A-to-I editing events in lncRNA. |
LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
Edited-associated DElncRNAs in cancer. |
LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
lncRNA regulates differentially expressed genes by function as enhancer. |
LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation | ENSG00000233483 | ENST00000420431 | SEC23A | ENSG00000100934 | ENST00000548032 | -0.1119 | 1 | - | BLCA,PRAD | ENSG00000233483 | ENST00000420431 | SEC23A | ENSG00000100934 | ENST00000557280 | -0.5188 | 1 | - | BLCA,PRAD | ENSG00000233483 | ENST00000420431 | SEC23A | ENSG00000100934 | ENST00000553970 | -0.5188 | 1 | - | BLCA,PRAD | ENSG00000233483 | ENST00000420431 | KLHL5 | ENSG00000109790 | ENST00000504108 | -0.1586 | 500 | - | BLCA,PRAD | ENSG00000233483 | ENST00000420431 | KLHL5 | ENSG00000109790 | ENST00000515612 | -0.3626 | 218 | - | BLCA,PRAD | ENSG00000233483 | ENST00000589518 | SEC23A | ENSG00000100934 | ENST00000548032 | -0.1374 | 1 | - | BLCA,PRAD | ENSG00000233483 | ENST00000589518 | SEC23A | ENSG00000100934 | ENST00000557280 | -0.1205 | 135 | - | BLCA,PRAD | ENSG00000233483 | ENST00000589518 | SEC23A | ENSG00000100934 | ENST00000553970 | -0.1205 | 135 | - | BLCA,PRAD | ENSG00000233483 | ENST00000589518 | KLHL5 | ENSG00000109790 | ENST00000504108 | -0.1123 | 21 | - | BLCA,PRAD | ENSG00000233483 | ENST00000589518 | KLHL5 | ENSG00000109790 | ENST00000515612 | -0.3193 | 58 | - | BLCA,PRAD | ENSG00000233483 | ENST00000591361 | SEC23A | ENSG00000100934 | ENST00000548032 | -0.1009 | 62 | - | BLCA,PRAD | ENSG00000233483 | ENST00000591361 | SEC23A | ENSG00000100934 | ENST00000557280 | -0.1586 | 379 | - | BLCA,PRAD | ENSG00000233483 | ENST00000591361 | SEC23A | ENSG00000100934 | ENST00000553970 | -0.1586 | 379 | - | BLCA,PRAD | ENSG00000233483 | ENST00000591361 | KLHL5 | ENSG00000109790 | ENST00000504108 | -0.1477 | 210 | - | BLCA,PRAD | ENSG00000233483 | ENST00000591361 | KLHL5 | ENSG00000109790 | ENST00000515612 | -0.3193 | 315 | - | BLCA,PRAD | ENSG00000233483 | ENST00000420431 | SLMAP | ENSG00000163681 | ENST00000495364 | -0.2232 | 415 | - | BLCA,PRAD | ENSG00000233483 | ENST00000420431 | SLMAP | ENSG00000163681 | ENST00000494088 | -0.1184 | 36 | - | BLCA,PRAD | ENSG00000233483 | ENST00000589518 | SLMAP | ENSG00000163681 | ENST00000495364 | -0.2104 | 62 | - | BLCA,PRAD | ENSG00000233483 | ENST00000589518 | SLMAP | ENSG00000163681 | ENST00000494088 | -0.1857 | 1 | - | BLCA,PRAD | ENSG00000233483 | ENST00000591361 | SLMAP | ENSG00000163681 | ENST00000416658 | -0.1756 | 324 | - | BLCA,PRAD | ENSG00000233483 | ENST00000591361 | SLMAP | ENSG00000163681 | ENST00000417128 | -0.1756 | 324 | - | BLCA,PRAD | ENSG00000233483 | ENST00000591361 | SLMAP | ENSG00000163681 | ENST00000495364 | -0.2221 | 475 | - | BLCA,PRAD | ENSG00000233483 | ENST00000591361 | SLMAP | ENSG00000163681 | ENST00000494088 | -0.1845 | 324 | - | BLCA,PRAD | ENSG00000233483 | ENST00000591361 | SLMAP | ENSG00000163681 | ENST00000460223 | -0.1756 | 324 | - | BLCA,PRAD | ENSG00000233483 | ENST00000589518 | PEAK1 | ENSG00000173517 | ENST00000312493 | -0.1061 | 1 | - | BLCA,PRAD | ENSG00000233483 | ENST00000420431 | CLIP1 | ENSG00000130779 | ENST00000540338 | -0.2659 | 27 | - | BLCA | ENSG00000233483 | ENST00000589518 | CLIP1 | ENSG00000130779 | ENST00000540338 | -0.3572 | 280 | - | BLCA | ENSG00000233483 | ENST00000589518 | SETD7 | ENSG00000145391 | ENST00000274031 | -0.1036 | 1 | - | BLCA | ENSG00000233483 | ENST00000589518 | SETD7 | ENSG00000145391 | ENST00000608958 | -0.1073 | 1 | - | BLCA | ENSG00000233483 | ENST00000589518 | DENND5A | ENSG00000184014 | ENST00000528725 | -0.1338 | 4 | - | BLCA | ENSG00000233483 | ENST00000589518 | DENND5A | ENSG00000184014 | ENST00000533737 | -0.1338 | 4 | - | BLCA | ENSG00000233483 | ENST00000589518 | DENND5A | ENSG00000184014 | ENST00000531747 | -0.1318 | 1 | - | BLCA | ENSG00000233483 | ENST00000591361 | CLIP1 | ENSG00000130779 | ENST00000540539 | -0.1025 | 242 | - | BLCA | ENSG00000233483 | ENST00000591361 | CLIP1 | ENSG00000130779 | ENST00000540338 | -0.2975 | 403 | - | BLCA | ENSG00000233483 | ENST00000591361 | CLIP1 | ENSG00000130779 | ENST00000541108 | -0.1020 | 1 | - | BLCA | ENSG00000233483 | ENST00000591361 | SETD7 | ENSG00000145391 | ENST00000608958 | -0.1018 | 1 | - | BLCA | ENSG00000233483 | ENST00000591361 | DENND5A | ENSG00000184014 | ENST00000528725 | -0.1992 | 261 | - | BLCA | ENSG00000233483 | ENST00000591361 | DENND5A | ENSG00000184014 | ENST00000533737 | -0.1992 | 261 | - | BLCA | ENSG00000233483 | ENST00000591361 | DENND5A | ENSG00000184014 | ENST00000526707 | -0.1240 | 243 | - | BLCA | ENSG00000233483 | ENST00000591361 | DENND5A | ENSG00000184014 | ENST00000527896 | -0.1022 | 262 | - | BLCA | ENSG00000233483 | ENST00000591361 | DENND5A | ENSG00000184014 | ENST00000530780 | -0.1285 | 296 | - | BLCA | ENSG00000233483 | ENST00000420431 | TNS1 | ENSG00000079308 | ENST00000453356 | -0.1851 | 43 | - | BLCA,PRAD | ENSG00000233483 | ENST00000589518 | TNS1 | ENSG00000079308 | ENST00000171887 | -0.1164 | 1 | - | BLCA,PRAD | ENSG00000233483 | ENST00000589518 | TNS1 | ENSG00000079308 | ENST00000446688 | -0.1066 | 1 | - | BLCA,PRAD | ENSG00000233483 | ENST00000589518 | TNS1 | ENSG00000079308 | ENST00000453356 | -0.1730 | 164 | - | BLCA,PRAD | ENSG00000233483 | ENST00000591361 | TNS1 | ENSG00000079308 | ENST00000171887 | -0.1033 | 1 | - | BLCA,PRAD | ENSG00000233483 | ENST00000591361 | TNS1 | ENSG00000079308 | ENST00000446688 | -0.1033 | 1 | - | BLCA,PRAD | ENSG00000233483 | ENST00000591361 | TNS1 | ENSG00000079308 | ENST00000310858 | -0.1027 | 25 | - | BLCA,PRAD | ENSG00000233483 | ENST00000591361 | TNS1 | ENSG00000079308 | ENST00000453356 | -0.1877 | 308 | - | BLCA,PRAD |
lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | ENSG00000233483.2 | ENST00000420431.2 | 98 | 25 | 321 | ENSG00000233483.2 | ENST00000589518.1 | 134 | 506 | 102 | ENSG00000233483.2 | ENST00000591361.1 | 122 | 367 | 2 |
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