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lncRNA: ENSG00000233237 |
Summary for LINC00472 |
Gene summary |
Gene information | Ensembl ID | ENSG00000233237 | Gene symbol | LINC00472 |
Gene name | long intergenic non-protein coding RNA 472 | |
HGNC | 21380 | |
Entrez ID | 79940 | |
Gene type | lincRNA | |
Synonyms | 06q13|LINC00472 | |
UniProtAcc | Q9H8W2 |
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Structure and expression level for LINC00472 |
AS events and RNA A-to-I editing events of lncRNA in TCGA based on Genvode V22 structure. |
Differentially expressed gene analysis between cancer and normal samples. |
Ensembl ID | Base mean | log2FC(AD/control) | lfcSE | Stat | P-value | Adjc.p-value | DEG direction | Cancer type |
ENSG00000233237 | 3.360752e+02 | -1.906712e+00 | 1.503761e-01 | -1.267962e+01 | 7.670000e-37 | 1.080000e-35 | DOWN | KIRC |
ENSG00000233237 | 2.736439e+02 | -1.871736e+00 | 2.066120e-01 | -9.059180e+00 | 1.310000e-19 | 3.030000e-18 | DOWN | KIRP |
Correlation between lncRNAs and cancer stages. |
LncRNA Ensembl ID | Correlation | P-value | Cancer Type | Adjc.p-value |
ENSG00000233237 | -5.069320e-01 | 3.993640e-07 | KICH | 1.267273e-06 |
ENSG00000233237 | -4.542850e-01 | 2.716165e-32 | KIRC | 1.746106e-30 |
ENSG00000233237 | -3.496559e-01 | 8.030451e-10 | KIRP | 8.761795e-09 |
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lncRNA-Protein interaction for LINC00472 |
lncRNA-epigenetic factor interaction (#cancer types with positive correlation >= 5). |
LncRNA Ensembl ID | LncRNA ENST ID | LncRNA Name | Protein Ensembl ID | Protein Name | CatRAPID Score | Lncpro Score | UniPortID | Gene Subtype | Public source |
lncRNA-transcript factor interaction (#cancer types with positive correlation >= 5). |
LncRNA Ensembl ID | LncRNA ENST ID | LncRNA Name | Protein Ensembl ID | Protein Name | CatRAPID Score | Lncpro Score | UniPortID | Gene Subtype | Public source |
lncRNA-RNA binding protein interaction (#cancer types with positive correlation >= 5). |
LncRNA Ensembl ID | LncRNA ENST ID | LncRNA Name | Protein Ensembl ID | Protein Name | CatRAPID Score | Lncpro Score | UniPortID | Gene Subtype | Public source |
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