 lncRNA targets the enhancer region and positively regulates the gene expression. |
| lncRNA targets the promoter region and positively regulates the gene expression. |
| lncRNA targets the promoter region and negatively regulates the gene expression. |
| lncRNA targets the 3'UTR region and negatively regulates the mRNA. |
| Only predicted by lncTar | | RBMS3,FOXN3,AZI2,CTDSP2,PCNX1,PTPN11,SLC12A4,PPP1R12A,ZEB1 | | Exist in public source | | NA |
| lncRNA targets the skipped exon region. | | -lncRNA and exonskipping events are positively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | ORF mutation | | ENSG00000232093 | ENST00000452962 | exon_skip_48713 | chr10:34336198-34336243 | -8.09 | -0.3236 | PARD3 | ENST00000374789 | In-frame | | ENSG00000232093 | ENST00000452962 | exon_skip_499771 | chr9:128592982-128593042 | -10.39 | -0.3463 | SPTAN1 | ENST00000372731 | In-frame | | ENSG00000232093 | ENST00000452962 | exon_skip_11286 | chr1:155061903-155061975 | -14.09 | -0.2237 | ADAM15 | ENST00000356955 | In-frame | | ENSG00000232093 | ENST00000452962 | exon_skip_461111 | chr6:90544551-90544632 | -10.88 | -0.1432 | MAP3K7 | ENST00000369329 | In-frame |
| -lncRNA and exonskipping events are negatively correlated. |
| LncRNA Ensembl ID | LncRNA ENST ID | Exon ID | Skipped Exon | dG | ndG | Gene name with skipped exon | TransID with skipped exon | LOF | | ENSG00000232093 | ENST00000452962 | exon_skip_33516 | chr1:156938417-156938513 | -18.37 | -0.2187 | ARHGEF11 | ENST00000361409 | In-frame | | ENSG00000232093 | ENST00000452962 | exon_skip_90104 | chr12:10709907-10710114 | -24.40 | -0.1452 | YBX3 | ENST00000228251 | In-frame | | ENSG00000232093 | ENST00000452962 | exon_skip_368285 | chr22:29329711-29329720 | -3.16 | -1.5800 | AP1B1 | ENST00000357586,ENST00000405198 | In-frame | | ENSG00000232093 | ENST00000452962 | exon_skip_514511 | chrX:41555599-41555635 | -10.59 | -0.3416 | CASK | ENST00000378163 | In-frame |
| lncRNA targets by miRNA. |
| LncRNA Ensembl ID | miRNA ID | LncRNA ENST ID | Binding site in lncRNA | Score | Energy | Align Len | Public source |
| RNA A-to-I editing events in lncRNA. |
| LncRNAediting ID | LncRNA Ensembl ID | Chromosome | Editing Position | Strand | Gene Type | Gene Name | Transcript ID | Transcript Type | Transcript Name |
| Edited-associated DElncRNAs in cancer. |
| LncRNA Ensembl ID | LncRNA Index | Cancer Type | Chr_Postion_Strand | AVE1 | AVE2 | log2FC | W-value | P-value | Adjc.p-value | Change |
| Correlation between RNA A-to-I editing events's frequecy and lncRNA expression. |
| LncRNA Ensembl ID | LncRNA Index | Correlation | P-value | Adjc.p-value |
| Cis-expression quantitative trait loci(cis-eQTL) of lncRNA. |
| LncRNA Ensembl ID | LncRNA Name | SNP info | Number of Positive corelated Cancer | Positive corelated Cancer | Number of Negative corelated Cancer | Negative corelated Cancer |
| lncRNA regulates differentially expressed genes by function as enhancer. |
| LncRNA Ensembl ID | PC Gene ID | PC Gene Name | Positive correlated cancers | Cancer with PC gene up-regulation | Cancer with PC gene down-regulation |
| LncRNA-TF complex positively regulates the gene expression by target promoter region (#cancer types with positive correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-TF complex negatively regulates the gene expression by target promoter region (#cancer types with negative correlation >= 5). |
| lncRNA ID | TF ID | TF Name | PCgene ID | PCgene Name | Number of Cancer | Canaer Types |
| LncRNA-RBP complex positively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| LncRNA-RBP complex negatively regulates the exon skippping events by target skipped eoxon region. |
| LncRNA Ensembl ID | RBP ID | RBP Gene Name | Exon Skipping ID | Skipped Exon | EX Gene Name | EX Affected TransID | ORF_anno | Cancer Type |
| lncRNA regulates differential expressed mRNA by directly targeting 3' UTR region. |
| LncRNA Ensembl ID | LncRNA ENST ID | PC Gene Name | PC Gene ID | PC ENST ID | dG | nDG | Cancer with PC gene up-regulation | Cancer with PC gene Down-regulation | | ENSG00000232093 | ENST00000452962 | PCNX1 | ENSG00000100731 | ENST00000555780 | -0.1238 | 394 | - | BRCA | | ENSG00000232093 | ENST00000452962 | SLC12A4 | ENSG00000124067 | ENST00000537830 | -0.1255 | 213 | - | UCEC,LUSC,LUAD |
| lncRNA regulates mRNA by competing the miRNA binding site with mRNA. |
| LncRNA Ensembl ID | lncRNA-miRNA-mRNA | Cancer Types |
| ORFfinder result for the gencode.v22.lncRNA.transcript.fa. |
| lncRNA Ensembl ID | lncRNA ENST ID | length(AA) | start at transcript | end at transcript | | ENSG00000232093.1 | ENST00000452962.1 | 138 | 28 | 444 |
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